Wall clock time and date at job start Tue Mar 31 2020 23:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.48206 * 2 1 4 4 C 1.53104 * 109.48528 * 240.05087 * 2 1 3 5 5 C 1.53178 * 109.15927 * 182.49785 * 4 2 1 6 6 H 1.09000 * 109.54098 * 296.93915 * 5 4 2 7 7 C 1.50694 * 109.54782 * 176.75833 * 5 4 2 8 8 O 1.21290 * 119.99750 * 0.18129 * 7 5 4 9 9 N 1.34767 * 120.00394 * 180.17678 * 7 5 4 10 10 C 1.46508 * 120.00291 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.47284 * 179.97438 * 10 9 7 12 12 C 1.53509 * 114.17045 * 185.00096 * 11 10 9 13 13 N 1.47486 * 87.93224 * 220.33117 * 12 11 10 14 14 C 1.46899 * 111.00363 * 138.70028 * 13 12 11 15 15 C 1.50698 * 109.46987 * 169.99692 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47459 * 59.99812 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47211 * 300.00250 * 22 20 18 26 26 C 1.47486 * 87.83726 * 27.00669 * 13 12 11 27 27 C 1.53182 * 109.10814 * 56.84760 * 5 4 2 28 28 C 1.53093 * 109.16247 * 303.06316 * 27 5 4 29 29 O 1.42907 * 109.41647 * 57.61204 * 28 27 5 30 30 H 1.08997 * 109.47217 * 299.98228 * 1 2 3 31 31 H 1.09003 * 109.47039 * 59.98296 * 1 2 3 32 32 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.59392 * 62.54947 * 4 2 1 34 34 H 1.08999 * 109.44927 * 302.35698 * 4 2 1 35 35 H 0.97001 * 119.99935 * 359.97438 * 9 7 5 36 36 H 1.09001 * 109.46712 * 59.99640 * 10 9 7 37 37 H 1.08995 * 109.46826 * 299.99817 * 10 9 7 38 38 H 1.09001 * 113.25502 * 317.95596 * 11 10 9 39 39 H 1.08995 * 113.48184 * 105.56484 * 12 11 10 40 40 H 1.09001 * 113.47305 * 335.09223 * 12 11 10 41 41 H 1.09003 * 109.46477 * 50.00182 * 14 13 12 42 42 H 1.08993 * 109.47002 * 290.00508 * 14 13 12 43 43 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 44 44 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 45 45 H 1.08998 * 113.47192 * 87.75755 * 26 13 12 46 46 H 1.08994 * 113.47979 * 218.22257 * 26 13 12 47 47 H 1.08997 * 109.52610 * 62.97007 * 27 5 4 48 48 H 1.08999 * 109.51979 * 183.16156 * 27 5 4 49 49 H 1.09003 * 109.47985 * 177.59314 * 28 27 5 50 50 H 1.09003 * 109.48445 * 297.62958 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7206 -1.2506 5 6 3.5712 -0.7711 -1.2120 6 1 3.9703 0.2428 -1.2415 7 6 4.0802 -1.5480 -2.3987 8 8 3.2974 -2.0133 -3.1998 9 7 5.4051 -1.7257 -2.5699 10 6 5.8999 -2.4805 -3.7240 11 6 7.4284 -2.5332 -3.6816 12 6 8.0686 -3.1972 -4.9087 13 7 9.0251 -3.8455 -3.9922 14 6 9.2590 -5.2435 -4.3780 15 6 10.4124 -5.7980 -3.5821 16 8 10.9830 -5.0976 -2.7728 17 7 10.8090 -7.0724 -3.7690 18 6 11.8619 -7.5752 -3.0490 19 1 12.3705 -6.9513 -2.3289 20 6 12.2746 -8.8874 -3.2457 21 7 11.6560 -9.6463 -4.1223 22 14 13.7086 -9.5726 -2.2642 23 1 13.3915 -9.5097 -0.8149 24 1 13.9486 -10.9841 -2.6582 25 1 14.9263 -8.7684 -2.5397 26 6 7.9949 -3.7526 -2.9409 27 6 4.0177 -1.4601 0.0812 28 6 3.4308 -0.7091 1.2792 29 8 2.0066 -0.6740 1.1666 30 1 -0.3633 0.5135 0.8901 31 1 -0.3633 0.5141 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7164 -0.1819 -2.1409 34 1 1.6432 -1.7353 -1.2726 35 1 6.0311 -1.3531 -1.9295 36 1 5.5789 -1.9905 -4.6432 37 1 5.5001 -3.4940 -3.6937 38 1 7.8840 -1.5842 -3.3989 39 1 8.5350 -2.4880 -5.5924 40 1 7.4082 -3.9006 -5.4158 41 1 9.4944 -5.2924 -5.4412 42 1 8.3631 -5.8307 -4.1769 43 1 10.3524 -7.6327 -4.4159 44 1 11.9438 -10.5624 -4.2594 45 1 7.3149 -4.6043 -2.9229 46 1 8.3988 -3.5141 -1.9570 47 1 3.6614 -2.4902 0.0869 48 1 5.1059 -1.4497 0.1424 49 1 3.7100 -1.2199 2.2008 50 1 3.8192 0.3092 1.2958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692342005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:45 Heat of formation + Delta-G solvation = -93.309605 kcal Electronic energy + Delta-G solvation = -28968.979866 eV Core-core repulsion = 24803.856967 eV Total energy + Delta-G solvation = -4165.122899 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.81912 -40.20232 -38.95269 -37.76575 -35.06996 -34.13767 -33.87612 -33.18255 -31.37567 -30.83149 -28.41944 -27.62237 -25.92228 -25.41291 -24.53192 -23.17281 -22.53674 -21.25042 -20.50590 -19.60150 -19.18565 -17.90406 -17.43199 -16.80425 -16.55484 -16.29260 -16.06243 -15.66936 -15.31295 -15.13604 -15.06513 -14.67936 -14.54524 -14.42398 -13.94286 -13.69480 -13.61368 -13.18668 -13.01923 -12.87818 -12.71193 -12.57576 -12.31912 -12.25784 -11.81034 -11.65692 -11.57950 -11.51695 -11.39628 -11.18992 -11.06058 -10.88411 -10.77691 -10.54900 -10.44015 -10.24454 -10.20214 -9.76649 -9.48625 -9.34167 -8.81931 -8.20930 -7.95507 -6.40885 -3.81793 2.33744 2.82972 3.20207 3.25755 3.30104 3.34968 3.89721 3.95798 4.12658 4.15253 4.23332 4.28022 4.33460 4.45875 4.59540 4.70065 4.72832 4.91563 4.93826 4.99738 5.00600 5.03984 5.17905 5.19787 5.24919 5.29393 5.33313 5.36377 5.44799 5.48543 5.50439 5.54186 5.64468 5.64540 5.68188 5.72365 5.76037 5.87528 5.90827 6.03415 6.21306 6.26796 6.51236 6.81915 7.14149 7.19595 7.55425 7.92770 8.06493 8.62913 9.18996 9.55358 10.07804 10.76901 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.001717 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.686162 B =16304.592010 C =17086.132392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.058 0.942 4 C -0.129 4.129 5 C -0.110 4.110 6 H 0.098 0.902 7 C 0.518 3.482 8 O -0.539 6.539 9 N -0.726 5.726 10 C 0.130 3.870 11 C -0.132 4.132 12 C 0.005 3.995 13 N -0.440 5.440 14 C 0.008 3.992 15 C 0.446 3.554 16 O -0.576 6.576 17 N -0.567 5.567 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.010 3.990 27 C -0.149 4.149 28 C 0.064 3.936 29 O -0.379 6.379 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.402 0.598 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.391 0.609 44 H 0.272 0.728 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.111 19.618 4.467 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.076 0.924 4 C -0.167 4.167 5 C -0.131 4.131 6 H 0.116 0.884 7 C 0.304 3.696 8 O -0.416 6.416 9 N -0.378 5.378 10 C 0.006 3.994 11 C -0.151 4.151 12 C -0.125 4.125 13 N -0.161 5.161 14 C -0.124 4.124 15 C 0.231 3.769 16 O -0.459 6.459 17 N -0.204 5.204 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.119 4.119 27 C -0.187 4.187 28 C -0.013 4.013 29 O -0.299 6.299 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.237 0.763 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.224 0.776 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.098 0.902 48 H 0.100 0.900 49 H 0.117 0.883 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.666 19.686 4.591 28.203 hybrid contribution 0.372 -1.086 -0.156 1.159 sum -19.294 18.600 4.435 27.164 Atomic orbital electron populations 1.21759 0.92788 1.03213 1.02469 1.22138 0.95389 0.94843 0.84828 0.92398 1.22065 0.92869 1.03283 0.98521 1.21396 0.97913 1.00259 0.93541 0.88414 1.20541 0.82181 0.80238 0.86688 1.90715 1.55683 1.49675 1.45498 1.46026 1.07154 1.56379 1.28212 1.21385 0.92664 0.96651 0.88678 1.23019 0.93215 0.99913 0.98917 1.23835 0.94347 0.98549 0.95792 1.68818 1.29340 1.13631 1.04343 1.22511 0.98781 0.90341 1.00745 1.19658 0.87093 0.83053 0.87066 1.90516 1.58274 1.58776 1.38377 1.41871 1.30740 1.10145 1.37627 1.19648 1.08365 0.95887 1.18991 0.88023 1.25254 0.99179 0.96132 0.97394 1.69605 1.41620 1.08777 1.34424 0.85917 0.80996 0.77595 0.79695 1.19946 1.20977 1.19904 1.23956 0.93073 0.96273 0.98621 1.22227 1.01666 1.01178 0.93627 1.22555 0.81068 0.99556 0.98098 1.87963 1.20872 1.78020 1.43002 0.91771 0.90952 0.91621 0.90151 0.90035 0.76345 0.91055 0.91190 0.87352 0.89361 0.91164 0.89348 0.92259 0.77550 0.91851 0.91335 0.89413 0.90187 0.90037 0.88284 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.57 37.16 0.36 -0.51 16 2 C 0.09 0.59 3.26 -26.68 -0.09 0.50 16 3 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 4 C -0.13 -1.01 4.02 -26.59 -0.11 -1.11 16 5 C -0.11 -0.77 2.61 -91.59 -0.24 -1.01 16 6 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 7 C 0.52 5.09 7.16 -10.99 -0.08 5.01 16 8 O -0.54 -7.48 15.97 5.55 0.09 -7.39 16 9 N -0.73 -5.93 5.46 -60.29 -0.33 -6.26 16 10 C 0.13 1.21 5.58 -4.04 -0.02 1.18 16 11 C -0.13 -1.29 4.09 -90.09 -0.37 -1.66 16 12 C 0.00 0.05 7.26 -7.53 -0.05 0.00 16 13 N -0.44 -7.06 5.82 -246.04 -1.43 -8.50 16 14 C 0.01 0.15 5.30 -4.98 -0.03 0.12 16 15 C 0.45 10.70 7.85 -10.99 -0.09 10.62 16 16 O -0.58 -15.96 16.01 5.55 0.09 -15.87 16 17 N -0.57 -14.52 5.29 -10.96 -0.06 -14.58 16 18 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 22 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.01 0.13 7.28 -7.52 -0.05 0.08 16 27 C -0.15 -0.94 5.30 -26.59 -0.14 -1.08 16 28 C 0.06 0.39 6.84 37.21 0.25 0.65 16 29 O -0.38 -3.21 10.41 -35.23 -0.37 -3.58 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.79 8.03 -51.93 -0.42 0.37 16 35 H 0.40 2.37 7.97 -40.82 -0.33 2.05 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.74 7.81 -51.93 -0.41 0.33 16 38 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 41 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 42 H 0.06 0.94 7.30 -51.93 -0.38 0.56 16 43 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.07 0.89 7.15 -51.93 -0.37 0.52 16 46 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 0.38 7.68 -51.93 -0.40 -0.02 16 49 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 405.28 15.07 6.11 6.11 Total: -1.00 -35.06 405.28 -9.55 -44.61 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -8.45 Total: 8.59 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -0.90 Total: 4.69 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -1.10 Total: -53.31 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.19 Total: -26.84 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.06 -9.55 -44.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692342005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.699 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds