Wall clock time and date at job start Tue Mar 31 2020 23:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.48206 * 2 1 4 4 C 1.53104 * 109.48528 * 240.05087 * 2 1 3 5 5 C 1.53178 * 109.15927 * 182.49785 * 4 2 1 6 6 H 1.09000 * 109.54098 * 296.93915 * 5 4 2 7 7 C 1.50694 * 109.54782 * 176.75833 * 5 4 2 8 8 O 1.21290 * 119.99750 * 0.18129 * 7 5 4 9 9 N 1.34767 * 120.00394 * 180.17678 * 7 5 4 10 10 C 1.46508 * 120.00291 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.47284 * 179.97438 * 10 9 7 12 12 C 1.53509 * 114.17045 * 185.00096 * 11 10 9 13 13 N 1.47486 * 87.93224 * 220.33117 * 12 11 10 14 14 C 1.46899 * 111.00363 * 138.70028 * 13 12 11 15 15 C 1.50698 * 109.46987 * 169.99692 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47459 * 59.99812 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47211 * 300.00250 * 22 20 18 26 26 C 1.47486 * 87.83726 * 27.00669 * 13 12 11 27 27 C 1.53182 * 109.10814 * 56.84760 * 5 4 2 28 28 C 1.53093 * 109.16247 * 303.06316 * 27 5 4 29 29 O 1.42907 * 109.41647 * 57.61204 * 28 27 5 30 30 H 1.08997 * 109.47217 * 299.98228 * 1 2 3 31 31 H 1.09003 * 109.47039 * 59.98296 * 1 2 3 32 32 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.59392 * 62.54947 * 4 2 1 34 34 H 1.08999 * 109.44927 * 302.35698 * 4 2 1 35 35 H 0.97001 * 119.99935 * 359.97438 * 9 7 5 36 36 H 1.09001 * 109.46712 * 59.99640 * 10 9 7 37 37 H 1.08995 * 109.46826 * 299.99817 * 10 9 7 38 38 H 1.09001 * 113.25502 * 317.95596 * 11 10 9 39 39 H 1.08995 * 113.48184 * 105.56484 * 12 11 10 40 40 H 1.09001 * 113.47305 * 335.09223 * 12 11 10 41 41 H 1.09003 * 109.46477 * 50.00182 * 14 13 12 42 42 H 1.08993 * 109.47002 * 290.00508 * 14 13 12 43 43 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 44 44 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 45 45 H 1.08998 * 113.47192 * 87.75755 * 26 13 12 46 46 H 1.08994 * 113.47979 * 218.22257 * 26 13 12 47 47 H 1.08997 * 109.52610 * 62.97007 * 27 5 4 48 48 H 1.08999 * 109.51979 * 183.16156 * 27 5 4 49 49 H 1.09003 * 109.47985 * 177.59314 * 28 27 5 50 50 H 1.09003 * 109.48445 * 297.62958 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7206 -1.2506 5 6 3.5712 -0.7711 -1.2120 6 1 3.9703 0.2428 -1.2415 7 6 4.0802 -1.5480 -2.3987 8 8 3.2974 -2.0133 -3.1998 9 7 5.4051 -1.7257 -2.5699 10 6 5.8999 -2.4805 -3.7240 11 6 7.4284 -2.5332 -3.6816 12 6 8.0686 -3.1972 -4.9087 13 7 9.0251 -3.8455 -3.9922 14 6 9.2590 -5.2435 -4.3780 15 6 10.4124 -5.7980 -3.5821 16 8 10.9830 -5.0976 -2.7728 17 7 10.8090 -7.0724 -3.7690 18 6 11.8619 -7.5752 -3.0490 19 1 12.3705 -6.9513 -2.3289 20 6 12.2746 -8.8874 -3.2457 21 7 11.6560 -9.6463 -4.1223 22 14 13.7086 -9.5726 -2.2642 23 1 13.3915 -9.5097 -0.8149 24 1 13.9486 -10.9841 -2.6582 25 1 14.9263 -8.7684 -2.5397 26 6 7.9949 -3.7526 -2.9409 27 6 4.0177 -1.4601 0.0812 28 6 3.4308 -0.7091 1.2792 29 8 2.0066 -0.6740 1.1666 30 1 -0.3633 0.5135 0.8901 31 1 -0.3633 0.5141 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7164 -0.1819 -2.1409 34 1 1.6432 -1.7353 -1.2726 35 1 6.0311 -1.3531 -1.9295 36 1 5.5789 -1.9905 -4.6432 37 1 5.5001 -3.4940 -3.6937 38 1 7.8840 -1.5842 -3.3989 39 1 8.5350 -2.4880 -5.5924 40 1 7.4082 -3.9006 -5.4158 41 1 9.4944 -5.2924 -5.4412 42 1 8.3631 -5.8307 -4.1769 43 1 10.3524 -7.6327 -4.4159 44 1 11.9438 -10.5624 -4.2594 45 1 7.3149 -4.6043 -2.9229 46 1 8.3988 -3.5141 -1.9570 47 1 3.6614 -2.4902 0.0869 48 1 5.1059 -1.4497 0.1424 49 1 3.7100 -1.2199 2.2008 50 1 3.8192 0.3092 1.2958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692342005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:44 Heat of formation + Delta-G solvation = -121.456345 kcal Electronic energy + Delta-G solvation = -28970.200400 eV Core-core repulsion = 24803.856967 eV Total energy + Delta-G solvation = -4166.343433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65980 -41.14262 -39.78648 -39.47344 -36.05766 -35.80640 -34.75046 -33.69708 -33.31609 -32.09683 -29.10873 -28.63070 -26.94361 -26.84681 -25.60804 -23.92340 -23.48917 -21.89778 -21.22037 -21.04080 -20.40364 -19.89688 -18.20948 -17.79581 -17.47869 -17.20613 -16.90580 -16.62158 -16.52903 -16.49860 -15.99913 -15.98477 -15.55052 -15.45058 -15.05842 -14.86288 -14.75636 -14.28825 -14.09160 -13.67665 -13.57906 -13.53565 -13.46510 -13.16734 -12.98250 -12.82778 -12.69556 -12.46024 -12.40944 -12.37263 -12.13889 -12.09621 -11.89985 -11.72065 -11.53592 -11.49157 -11.43449 -10.93408 -10.40155 -10.38999 -10.11408 -10.02439 -9.73345 -8.47466 -5.96593 1.38862 1.40481 1.51649 1.58456 2.04573 2.12463 2.28079 2.82154 2.87230 3.18333 3.27795 3.43962 3.56825 3.64744 3.72813 3.76649 3.94305 4.13319 4.15545 4.21613 4.22733 4.24806 4.34886 4.45744 4.46712 4.47998 4.50437 4.53488 4.61566 4.70825 4.72034 4.77187 4.80382 4.83382 4.86133 5.00181 5.04905 5.09507 5.19258 5.25881 5.32503 5.36559 5.39664 5.45681 5.89545 6.08135 6.33026 6.51872 6.59585 7.11807 7.21464 7.55322 8.11644 8.69708 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.001717 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.686162 B =16304.592010 C =17086.132392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.086 3.914 3 H 0.077 0.923 4 C -0.127 4.127 5 C -0.104 4.104 6 H 0.127 0.873 7 C 0.515 3.485 8 O -0.585 6.585 9 N -0.715 5.715 10 C 0.137 3.863 11 C -0.101 4.101 12 C 0.008 3.992 13 N -0.476 5.476 14 C 0.022 3.978 15 C 0.441 3.559 16 O -0.619 6.619 17 N -0.576 5.576 18 C -0.335 4.335 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.272 1.272 26 C 0.003 3.997 27 C -0.145 4.145 28 C 0.060 3.940 29 O -0.403 6.403 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.415 0.585 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.395 0.605 44 H 0.278 0.722 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.057 0.943 48 H 0.101 0.899 49 H 0.105 0.895 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.177 20.940 4.469 29.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.095 0.905 4 C -0.165 4.165 5 C -0.125 4.125 6 H 0.145 0.855 7 C 0.303 3.697 8 O -0.465 6.465 9 N -0.367 5.367 10 C 0.012 3.988 11 C -0.120 4.120 12 C -0.121 4.121 13 N -0.198 5.198 14 C -0.110 4.110 15 C 0.229 3.771 16 O -0.504 6.504 17 N -0.214 5.214 18 C -0.465 4.465 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.194 1.194 25 H -0.197 1.197 26 C -0.126 4.126 27 C -0.183 4.183 28 C -0.016 4.016 29 O -0.323 6.323 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.252 0.748 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.140 0.860 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.120 0.880 49 H 0.123 0.877 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.729 21.017 4.591 29.190 hybrid contribution 0.376 -1.472 -0.160 1.528 sum -19.354 19.545 4.431 27.860 Atomic orbital electron populations 1.21791 0.92519 1.02647 1.03352 1.22222 0.95751 0.95360 0.83831 0.90524 1.22014 0.93563 1.01783 0.99132 1.21421 0.97296 1.01301 0.92485 0.85533 1.21027 0.82153 0.79730 0.86822 1.90698 1.56832 1.51657 1.47282 1.45943 1.07045 1.55662 1.28089 1.21244 0.91970 0.96254 0.89293 1.22812 0.93323 0.98972 0.96867 1.23930 0.93557 0.98617 0.95973 1.68778 1.31865 1.12434 1.06752 1.22380 0.96546 0.91703 1.00377 1.20796 0.87779 0.82090 0.86464 1.90476 1.60040 1.59649 1.40267 1.41960 1.30618 1.11028 1.37771 1.19630 1.10072 0.96665 1.20130 0.90397 1.26048 1.01365 0.95791 0.98089 1.69668 1.42473 1.09130 1.34890 0.84982 0.77696 0.77377 0.78238 1.19691 1.19429 1.19699 1.24020 0.92706 0.98140 0.97721 1.22210 1.02824 0.99839 0.93397 1.22716 0.80035 1.00771 0.98100 1.87940 1.22307 1.78469 1.43542 0.91317 0.89623 0.92932 0.90243 0.92819 0.74756 0.90591 0.92430 0.85965 0.88130 0.89660 0.87468 0.90272 0.77078 0.91302 0.91148 0.91022 0.92455 0.88050 0.87660 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.57 71.98 0.69 -0.97 16 2 C 0.09 1.08 3.26 30.63 0.10 1.18 16 3 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 4 C -0.13 -1.92 4.02 30.69 0.12 -1.79 16 5 C -0.10 -1.30 2.61 -11.42 -0.03 -1.33 16 6 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 7 C 0.52 9.56 7.16 87.66 0.63 10.18 16 8 O -0.58 -16.19 15.97 -3.06 -0.05 -16.24 16 9 N -0.72 -10.30 5.46 -463.06 -2.53 -12.83 16 10 C 0.14 2.27 5.58 86.38 0.48 2.75 16 11 C -0.10 -1.75 4.09 -10.45 -0.04 -1.79 16 12 C 0.01 0.17 7.26 83.58 0.61 0.77 16 13 N -0.48 -14.69 5.82 -932.33 -5.43 -20.12 16 14 C 0.02 0.75 5.30 85.56 0.45 1.20 16 15 C 0.44 21.45 7.85 87.66 0.69 22.13 16 16 O -0.62 -35.13 16.01 -3.07 -0.05 -35.18 16 17 N -0.58 -30.07 5.29 -306.98 -1.62 -31.69 16 18 C -0.34 -19.32 9.68 84.04 0.81 -18.51 16 19 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 20 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 21 N -0.92 -50.09 13.05 21.66 0.28 -49.81 16 22 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 C 0.00 0.08 7.28 83.58 0.61 0.69 16 27 C -0.14 -1.60 5.30 30.69 0.16 -1.44 16 28 C 0.06 0.62 6.84 72.01 0.49 1.12 16 29 O -0.40 -6.42 10.41 -148.98 -1.55 -7.97 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 1.10 8.03 -2.39 -0.02 1.08 16 35 H 0.42 3.78 7.97 -92.71 -0.74 3.04 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.14 7.81 -2.39 -0.02 1.12 16 38 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.09 1.51 7.87 -2.39 -0.02 1.49 16 41 H 0.11 3.26 8.08 -2.39 -0.02 3.24 16 42 H 0.08 2.40 7.30 -2.39 -0.02 2.38 16 43 H 0.40 19.56 7.90 -92.71 -0.73 18.82 16 44 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 45 H 0.07 1.76 7.15 -2.39 -0.02 1.74 16 46 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.10 0.70 7.68 -2.39 -0.02 0.68 16 49 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -77.97 405.28 -3.20 -81.17 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -0.52 Total: 33.45 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 6.24 Total: 13.95 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -9.30 Total: -114.44 kcal Atomic # 8 Polarization: -57.74 SS G_CDS: -1.65 Total: -59.39 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -77.97 -3.20 -81.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692342005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.287 kcal (2) G-P(sol) polarization free energy of solvation -77.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds