Wall clock time and date at job start Tue Mar 31 2020 23:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47830 * 2 1 4 4 C 1.53089 * 109.47905 * 120.03531 * 2 1 3 5 5 C 1.53180 * 109.16339 * 177.59321 * 4 2 1 6 6 H 1.08995 * 109.61781 * 183.10424 * 5 4 2 7 7 C 1.50706 * 109.54354 * 62.88388 * 5 4 2 8 8 O 1.21278 * 119.99942 * 0.44862 * 7 5 4 9 9 N 1.34773 * 119.99878 * 180.44175 * 7 5 4 10 10 C 1.46506 * 119.99868 * 180.02562 * 9 7 5 11 11 C 1.52994 * 109.47085 * 180.02562 * 10 9 7 12 12 C 1.53510 * 114.17124 * 175.00259 * 11 10 9 13 13 N 1.47472 * 87.93567 * 139.86311 * 12 11 10 14 14 C 1.46906 * 111.00187 * 221.29686 * 13 12 11 15 15 C 1.50701 * 109.46965 * 169.99871 * 14 13 12 16 16 O 1.21289 * 120.00042 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99669 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00007 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99870 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00222 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99839 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99636 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47328 * 90.00117 * 22 20 18 24 24 H 1.48507 * 109.46658 * 209.99905 * 22 20 18 25 25 H 1.48504 * 109.47191 * 329.99218 * 22 20 18 26 26 C 1.47474 * 87.83857 * 332.99021 * 13 12 11 27 27 C 1.53177 * 109.03469 * 303.02160 * 5 4 2 28 28 C 1.53086 * 109.16600 * 56.98298 * 27 5 4 29 29 O 1.42903 * 109.48253 * 239.97887 * 2 1 3 30 30 H 1.08997 * 109.47259 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47599 * 300.02290 * 1 2 3 32 32 H 1.09006 * 109.46977 * 60.02309 * 1 2 3 33 33 H 1.08996 * 109.52757 * 57.68786 * 4 2 1 34 34 H 1.09000 * 109.52440 * 297.49460 * 4 2 1 35 35 H 0.96998 * 120.00462 * 0.02562 * 9 7 5 36 36 H 1.09007 * 109.46734 * 60.00732 * 10 9 7 37 37 H 1.08995 * 109.47369 * 300.00362 * 10 9 7 38 38 H 1.09001 * 113.25685 * 42.05509 * 11 10 9 39 39 H 1.08999 * 113.47644 * 25.09395 * 12 11 10 40 40 H 1.09004 * 113.52990 * 254.63781 * 12 11 10 41 41 H 1.08993 * 109.47164 * 289.99814 * 14 13 12 42 42 H 1.08996 * 109.46920 * 49.99848 * 14 13 12 43 43 H 0.97001 * 120.00106 * 359.97438 * 17 15 14 44 44 H 0.96999 * 119.99726 * 180.02562 * 21 20 18 45 45 H 1.08998 * 113.48515 * 141.77227 * 26 13 12 46 46 H 1.09001 * 113.47583 * 272.24643 * 26 13 12 47 47 H 1.09004 * 109.52261 * 176.88470 * 27 5 4 48 48 H 1.08996 * 109.52129 * 297.06875 * 27 5 4 49 49 H 1.08993 * 109.48571 * 62.36941 * 28 27 5 50 50 H 1.09003 * 109.48308 * 182.41259 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0405 -0.7224 1.2495 5 6 3.5711 -0.7710 1.2121 6 1 3.9404 -1.3319 2.0705 7 6 4.1211 0.6315 1.2519 8 8 3.3651 1.5779 1.3131 9 7 5.4531 0.8341 1.2195 10 6 5.9879 2.1975 1.2587 11 6 7.5162 2.1475 1.2095 12 6 8.1877 3.5252 1.1229 13 7 9.2089 3.0274 2.0631 14 6 9.5493 4.0504 3.0609 15 6 10.4012 3.4348 4.1410 16 8 10.6962 2.2597 4.0847 17 7 10.8352 4.1902 5.1693 18 6 11.6098 3.6302 6.1522 19 1 11.8725 2.5837 6.1021 20 6 12.0577 4.4090 7.2121 21 7 12.8006 3.8722 8.1539 22 14 11.6040 6.2189 7.2982 23 1 10.3306 6.3750 8.0462 24 1 12.6818 6.9668 7.9943 25 1 11.4391 6.7539 5.9228 26 6 8.1925 2.0960 2.5867 27 6 4.0176 -1.4600 -0.0810 28 6 3.4308 -0.7091 -1.2791 29 8 2.0066 -0.6740 -1.1665 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5142 0.8898 32 1 -0.3633 0.5135 -0.8902 33 1 1.6443 -1.7376 1.2708 34 1 1.7148 -0.1845 2.1398 35 1 6.0578 0.0773 1.1703 36 1 5.6695 2.6863 2.1796 37 1 5.6152 2.7588 0.4019 38 1 7.9002 1.4183 0.4961 39 1 7.5783 4.3317 1.5307 40 1 8.5835 3.7550 0.1336 41 1 10.1005 4.8582 2.5796 42 1 8.6345 4.4468 3.5014 43 1 10.5996 5.1301 5.2141 44 1 13.1130 4.4158 8.8941 45 1 8.5920 1.1134 2.8377 46 1 7.5843 2.5210 3.3852 47 1 5.1059 -1.4497 -0.1422 48 1 3.6614 -2.4901 -0.0866 49 1 3.8193 0.3092 -1.2957 50 1 3.7100 -1.2200 -2.2006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692342006.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:49 Heat of formation + Delta-G solvation = -83.188442 kcal Electronic energy + Delta-G solvation = -29547.291902 eV Core-core repulsion = 25382.607890 eV Total energy + Delta-G solvation = -4164.684013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08746 -40.33424 -38.58425 -37.94536 -35.14679 -34.13415 -33.96464 -33.04013 -31.75447 -31.02015 -28.32258 -27.72732 -25.92498 -25.32292 -24.47295 -23.18149 -22.50402 -21.69824 -20.42440 -19.48878 -19.30838 -18.34120 -17.07749 -16.76987 -16.59915 -16.35978 -16.24637 -15.70040 -15.43766 -15.23445 -14.97460 -14.81656 -14.43035 -14.29011 -14.14054 -13.55395 -13.42596 -13.11790 -12.93418 -12.75446 -12.68088 -12.60540 -12.40037 -12.36157 -12.25832 -12.17320 -11.77473 -11.51638 -11.45189 -11.23158 -11.14164 -10.84206 -10.81679 -10.62381 -10.54713 -10.10246 -10.00473 -9.59908 -9.57950 -9.33182 -8.87783 -8.42882 -8.21110 -6.34119 -3.85664 2.30832 2.82569 3.00096 3.04061 3.12660 3.46513 3.69029 3.91604 4.07403 4.12918 4.17582 4.30154 4.35027 4.53823 4.55764 4.63163 4.69264 4.85094 4.99295 5.05238 5.09405 5.14498 5.19634 5.21733 5.25487 5.28209 5.36654 5.39908 5.43578 5.44778 5.52230 5.54738 5.55518 5.62478 5.63934 5.65322 5.83031 5.85964 5.90597 5.95786 6.06527 6.19796 6.42120 6.95149 7.04150 7.16902 7.54601 7.90328 8.10449 8.56461 8.91677 9.38935 9.79151 10.78948 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023007 B = 0.001834 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.751889 B =15266.535917 C =15475.383995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 H 0.084 0.916 4 C -0.128 4.128 5 C -0.114 4.114 6 H 0.104 0.896 7 C 0.516 3.484 8 O -0.538 6.538 9 N -0.725 5.725 10 C 0.131 3.869 11 C -0.134 4.134 12 C 0.005 3.995 13 N -0.443 5.443 14 C 0.006 3.994 15 C 0.452 3.548 16 O -0.561 6.561 17 N -0.591 5.591 18 C -0.305 4.305 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.017 3.983 27 C -0.147 4.147 28 C 0.060 3.940 29 O -0.382 6.382 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.403 0.597 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.370 0.630 44 H 0.274 0.726 45 H 0.092 0.908 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.048 0.952 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.560 -5.926 -18.041 28.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.017 3.983 3 H 0.101 0.899 4 C -0.166 4.166 5 C -0.135 4.135 6 H 0.122 0.878 7 C 0.302 3.698 8 O -0.415 6.415 9 N -0.377 5.377 10 C 0.007 3.993 11 C -0.153 4.153 12 C -0.125 4.125 13 N -0.165 5.165 14 C -0.126 4.126 15 C 0.238 3.762 16 O -0.442 6.442 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.195 1.195 26 C -0.111 4.111 27 C -0.185 4.185 28 C -0.017 4.017 29 O -0.301 6.301 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.237 0.763 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.066 0.934 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.209 -6.301 -18.162 28.625 hybrid contribution -0.222 1.685 0.983 1.963 sum -21.431 -4.616 -17.179 27.852 Atomic orbital electron populations 1.21738 0.93253 1.02494 1.02468 1.22376 0.94986 0.96832 0.84097 0.89871 1.22008 0.92688 1.01932 0.99956 1.21452 0.97809 0.93773 1.00504 0.87799 1.20621 0.82195 0.91375 0.75622 1.90663 1.57545 1.44050 1.49255 1.46042 1.06967 1.09498 1.75165 1.21370 0.92238 0.83276 1.02442 1.23058 0.92854 0.99514 0.99879 1.23845 0.93406 0.95575 0.99686 1.68832 1.26716 1.10340 1.10617 1.22535 0.99772 0.95897 0.94428 1.19558 0.85360 0.87644 0.83646 1.90558 1.60182 1.16061 1.77445 1.42219 1.47980 1.10509 1.22340 1.19420 1.26048 0.98698 0.99208 0.86300 1.25042 0.96868 0.98482 0.95784 1.69621 1.34446 1.36542 1.11447 0.86672 0.79227 0.85000 0.78498 1.19643 1.20108 1.19496 1.23805 0.92317 1.00451 0.94576 1.22209 1.01508 1.00874 0.93930 1.22532 0.81630 0.99475 0.98030 1.87906 1.20409 1.78239 1.43584 0.92149 0.91047 0.91990 0.90463 0.90069 0.76255 0.91196 0.91118 0.87356 0.91189 0.89348 0.88903 0.92552 0.79722 0.91588 0.88938 0.91457 0.90239 0.89646 0.93358 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.56 37.16 0.36 -0.74 16 2 C 0.07 0.69 2.97 -26.69 -0.08 0.61 16 3 H 0.08 0.95 5.82 -51.93 -0.30 0.65 16 4 C -0.13 -1.02 4.56 -26.59 -0.12 -1.14 16 5 C -0.11 -0.82 3.04 -91.58 -0.28 -1.10 16 6 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 7 C 0.52 4.94 5.82 -10.98 -0.06 4.88 16 8 O -0.54 -7.00 13.85 5.56 0.08 -6.93 16 9 N -0.73 -5.85 5.43 -60.29 -0.33 -6.18 16 10 C 0.13 1.17 5.59 -4.04 -0.02 1.15 16 11 C -0.13 -1.27 4.08 -90.09 -0.37 -1.64 16 12 C 0.00 0.05 7.29 -7.56 -0.06 -0.01 16 13 N -0.44 -6.72 6.06 -246.12 -1.49 -8.21 16 14 C 0.01 0.10 5.31 -4.97 -0.03 0.07 16 15 C 0.45 10.23 7.62 -10.98 -0.08 10.14 16 16 O -0.56 -14.93 15.34 5.55 0.09 -14.84 16 17 N -0.59 -14.05 5.09 -10.96 -0.06 -14.10 16 18 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 19 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.65 13.96 55.50 0.77 -24.88 16 22 Si 0.88 19.31 27.74 -169.99 -4.71 14.59 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 26 C 0.02 0.24 6.29 -7.55 -0.05 0.19 16 27 C -0.15 -0.86 5.56 -26.60 -0.15 -1.01 16 28 C 0.06 0.45 6.62 37.20 0.25 0.70 16 29 O -0.38 -3.76 10.41 -35.23 -0.37 -4.12 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.69 8.02 -51.93 -0.42 0.27 16 35 H 0.40 2.42 7.86 -40.82 -0.32 2.10 16 36 H 0.07 0.73 7.82 -51.93 -0.41 0.32 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.66 7.73 -51.93 -0.40 0.26 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.06 0.80 7.56 -51.93 -0.39 0.41 16 43 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 46 H 0.07 0.92 7.45 -51.93 -0.39 0.54 16 47 H 0.08 0.33 7.50 -51.93 -0.39 -0.05 16 48 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.05 0.41 7.38 -51.93 -0.38 0.03 16 50 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 394.88 15.07 5.95 5.95 Total: -1.00 -35.07 394.88 -9.27 -44.34 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -8.26 Total: 9.99 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.94 Total: 4.39 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -1.10 Total: -53.37 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.20 Total: -25.89 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.07 -9.27 -44.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692342006.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.846 kcal (2) G-P(sol) polarization free energy of solvation -35.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds