Wall clock time and date at job start Tue Mar 31 2020 23:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47830 * 2 1 4 4 C 1.53089 * 109.47905 * 120.03531 * 2 1 3 5 5 C 1.53180 * 109.16339 * 177.59321 * 4 2 1 6 6 H 1.08995 * 109.61781 * 183.10424 * 5 4 2 7 7 C 1.50706 * 109.54354 * 62.88388 * 5 4 2 8 8 O 1.21278 * 119.99942 * 0.44862 * 7 5 4 9 9 N 1.34773 * 119.99878 * 180.44175 * 7 5 4 10 10 C 1.46506 * 119.99868 * 180.02562 * 9 7 5 11 11 C 1.52994 * 109.47085 * 180.02562 * 10 9 7 12 12 C 1.53510 * 114.17124 * 175.00259 * 11 10 9 13 13 N 1.47472 * 87.93567 * 139.86311 * 12 11 10 14 14 C 1.46906 * 111.00187 * 221.29686 * 13 12 11 15 15 C 1.50701 * 109.46965 * 169.99871 * 14 13 12 16 16 O 1.21289 * 120.00042 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99669 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00007 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99870 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00222 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99839 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99636 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47328 * 90.00117 * 22 20 18 24 24 H 1.48507 * 109.46658 * 209.99905 * 22 20 18 25 25 H 1.48504 * 109.47191 * 329.99218 * 22 20 18 26 26 C 1.47474 * 87.83857 * 332.99021 * 13 12 11 27 27 C 1.53177 * 109.03469 * 303.02160 * 5 4 2 28 28 C 1.53086 * 109.16600 * 56.98298 * 27 5 4 29 29 O 1.42903 * 109.48253 * 239.97887 * 2 1 3 30 30 H 1.08997 * 109.47259 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47599 * 300.02290 * 1 2 3 32 32 H 1.09006 * 109.46977 * 60.02309 * 1 2 3 33 33 H 1.08996 * 109.52757 * 57.68786 * 4 2 1 34 34 H 1.09000 * 109.52440 * 297.49460 * 4 2 1 35 35 H 0.96998 * 120.00462 * 0.02562 * 9 7 5 36 36 H 1.09007 * 109.46734 * 60.00732 * 10 9 7 37 37 H 1.08995 * 109.47369 * 300.00362 * 10 9 7 38 38 H 1.09001 * 113.25685 * 42.05509 * 11 10 9 39 39 H 1.08999 * 113.47644 * 25.09395 * 12 11 10 40 40 H 1.09004 * 113.52990 * 254.63781 * 12 11 10 41 41 H 1.08993 * 109.47164 * 289.99814 * 14 13 12 42 42 H 1.08996 * 109.46920 * 49.99848 * 14 13 12 43 43 H 0.97001 * 120.00106 * 359.97438 * 17 15 14 44 44 H 0.96999 * 119.99726 * 180.02562 * 21 20 18 45 45 H 1.08998 * 113.48515 * 141.77227 * 26 13 12 46 46 H 1.09001 * 113.47583 * 272.24643 * 26 13 12 47 47 H 1.09004 * 109.52261 * 176.88470 * 27 5 4 48 48 H 1.08996 * 109.52129 * 297.06875 * 27 5 4 49 49 H 1.08993 * 109.48571 * 62.36941 * 28 27 5 50 50 H 1.09003 * 109.48308 * 182.41259 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0405 -0.7224 1.2495 5 6 3.5711 -0.7710 1.2121 6 1 3.9404 -1.3319 2.0705 7 6 4.1211 0.6315 1.2519 8 8 3.3651 1.5779 1.3131 9 7 5.4531 0.8341 1.2195 10 6 5.9879 2.1975 1.2587 11 6 7.5162 2.1475 1.2095 12 6 8.1877 3.5252 1.1229 13 7 9.2089 3.0274 2.0631 14 6 9.5493 4.0504 3.0609 15 6 10.4012 3.4348 4.1410 16 8 10.6962 2.2597 4.0847 17 7 10.8352 4.1902 5.1693 18 6 11.6098 3.6302 6.1522 19 1 11.8725 2.5837 6.1021 20 6 12.0577 4.4090 7.2121 21 7 12.8006 3.8722 8.1539 22 14 11.6040 6.2189 7.2982 23 1 10.3306 6.3750 8.0462 24 1 12.6818 6.9668 7.9943 25 1 11.4391 6.7539 5.9228 26 6 8.1925 2.0960 2.5867 27 6 4.0176 -1.4600 -0.0810 28 6 3.4308 -0.7091 -1.2791 29 8 2.0066 -0.6740 -1.1665 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5142 0.8898 32 1 -0.3633 0.5135 -0.8902 33 1 1.6443 -1.7376 1.2708 34 1 1.7148 -0.1845 2.1398 35 1 6.0578 0.0773 1.1703 36 1 5.6695 2.6863 2.1796 37 1 5.6152 2.7588 0.4019 38 1 7.9002 1.4183 0.4961 39 1 7.5783 4.3317 1.5307 40 1 8.5835 3.7550 0.1336 41 1 10.1005 4.8582 2.5796 42 1 8.6345 4.4468 3.5014 43 1 10.5996 5.1301 5.2141 44 1 13.1130 4.4158 8.8941 45 1 8.5920 1.1134 2.8377 46 1 7.5843 2.5210 3.3852 47 1 5.1059 -1.4497 -0.1422 48 1 3.6614 -2.4901 -0.0866 49 1 3.8193 0.3092 -1.2957 50 1 3.7100 -1.2200 -2.2006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692342006.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:48 Heat of formation + Delta-G solvation = -112.860298 kcal Electronic energy + Delta-G solvation = -29548.578571 eV Core-core repulsion = 25382.607890 eV Total energy + Delta-G solvation = -4165.970681 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.84343 -41.36001 -39.80974 -39.19730 -36.11288 -35.84684 -34.74824 -33.80085 -33.65584 -32.15631 -29.06503 -28.71893 -26.92493 -26.75536 -25.43708 -24.02894 -23.41948 -22.40851 -21.31679 -21.19537 -20.32745 -20.08095 -17.87285 -17.79052 -17.48852 -17.26638 -17.04186 -16.86291 -16.62166 -16.44838 -16.12854 -15.92902 -15.38852 -15.28787 -14.98984 -14.81145 -14.68163 -14.47555 -14.27265 -13.76255 -13.59014 -13.50790 -13.36477 -13.27499 -13.09311 -12.93344 -12.92201 -12.80038 -12.45765 -12.34892 -12.04616 -12.00674 -11.86921 -11.70146 -11.59719 -11.51816 -11.39555 -10.81067 -10.44500 -10.27498 -10.25982 -10.08033 -9.79219 -8.43726 -6.04702 1.28110 1.33103 1.42344 1.59068 1.92191 2.14455 2.20612 2.67949 2.86048 3.11682 3.16217 3.37276 3.55913 3.70040 3.72824 3.79993 3.96975 4.03609 4.09644 4.19385 4.26862 4.28499 4.35413 4.40552 4.42350 4.48563 4.53657 4.60433 4.68220 4.69984 4.72635 4.81010 4.82409 4.85680 4.87827 4.96413 5.04914 5.09198 5.17708 5.24286 5.29695 5.34431 5.47552 5.51078 5.89037 6.01762 6.31378 6.51406 6.56706 6.85311 7.21618 7.36510 7.93253 8.73842 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023007 B = 0.001834 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.751889 B =15266.535917 C =15475.383995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 H 0.057 0.943 4 C -0.127 4.127 5 C -0.113 4.113 6 H 0.123 0.877 7 C 0.512 3.488 8 O -0.576 6.576 9 N -0.717 5.717 10 C 0.138 3.862 11 C -0.105 4.105 12 C 0.012 3.988 13 N -0.476 5.476 14 C 0.018 3.982 15 C 0.450 3.550 16 O -0.609 6.609 17 N -0.592 5.592 18 C -0.328 4.328 19 H 0.055 0.945 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.232 1.232 26 C 0.009 3.991 27 C -0.140 4.140 28 C 0.053 3.947 29 O -0.398 6.398 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.414 0.586 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.087 0.913 43 H 0.389 0.611 44 H 0.279 0.721 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.034 0.966 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.006 -4.195 -19.780 30.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.015 3.985 3 H 0.075 0.925 4 C -0.165 4.165 5 C -0.134 4.134 6 H 0.141 0.859 7 C 0.300 3.700 8 O -0.456 6.456 9 N -0.369 5.369 10 C 0.013 3.987 11 C -0.124 4.124 12 C -0.117 4.117 13 N -0.199 5.199 14 C -0.114 4.114 15 C 0.238 3.762 16 O -0.493 6.493 17 N -0.234 5.234 18 C -0.458 4.458 19 H 0.073 0.927 20 C -0.214 4.214 21 N -0.574 5.574 22 Si 0.784 3.216 23 H -0.182 1.182 24 H -0.199 1.199 25 H -0.155 1.155 26 C -0.120 4.120 27 C -0.178 4.178 28 C -0.023 4.023 29 O -0.318 6.318 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.251 0.749 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.139 0.861 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.137 0.863 42 H 0.105 0.895 43 H 0.225 0.775 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.118 0.882 48 H 0.116 0.884 49 H 0.053 0.947 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -22.651 -4.584 -19.936 30.521 hybrid contribution 0.261 1.002 1.487 1.811 sum -22.390 -3.582 -18.450 29.233 Atomic orbital electron populations 1.21744 0.92409 1.03047 1.02621 1.22339 0.95781 0.95649 0.84722 0.92471 1.21990 0.93389 1.02298 0.98790 1.21515 0.97228 0.92533 1.02123 0.85919 1.21062 0.82219 0.91970 0.74755 1.90652 1.58482 1.45407 1.51074 1.45988 1.06857 1.09690 1.74403 1.21239 0.91639 0.83739 1.02055 1.22871 0.92799 0.99535 0.97161 1.23931 0.92146 0.96263 0.99346 1.68824 1.28889 1.10970 1.11193 1.22486 0.99861 0.96257 0.92792 1.20859 0.84298 0.87071 0.83995 1.90536 1.61652 1.18580 1.78548 1.42059 1.47939 1.11491 1.21920 1.18990 1.28367 0.96641 1.01759 0.92702 1.26120 0.95940 1.04991 0.94364 1.69802 1.35819 1.39346 1.12423 0.85371 0.79174 0.76406 0.80617 1.18170 1.19936 1.15497 1.23812 0.92521 0.98882 0.96789 1.22206 1.02650 1.00853 0.92097 1.22712 0.80658 0.99252 0.99718 1.87882 1.21816 1.78161 1.43912 0.91324 0.90453 0.92334 0.89052 0.90980 0.74910 0.92453 0.90536 0.86072 0.89412 0.87557 0.86258 0.89537 0.77538 0.91120 0.91825 0.91857 0.88233 0.88438 0.94726 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.56 71.98 0.69 -1.43 16 2 C 0.07 1.33 2.97 30.62 0.09 1.42 16 3 H 0.06 1.35 5.82 -2.38 -0.01 1.34 16 4 C -0.13 -1.89 4.56 30.68 0.14 -1.75 16 5 C -0.11 -1.44 3.04 -11.42 -0.03 -1.47 16 6 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 7 C 0.51 9.29 5.82 87.66 0.51 9.80 16 8 O -0.58 -14.95 13.85 -3.02 -0.04 -14.99 16 9 N -0.72 -10.38 5.43 -463.06 -2.52 -12.90 16 10 C 0.14 2.20 5.59 86.38 0.48 2.69 16 11 C -0.10 -1.74 4.08 -10.45 -0.04 -1.78 16 12 C 0.01 0.21 7.29 83.57 0.61 0.82 16 13 N -0.48 -13.51 6.06 -932.57 -5.65 -19.16 16 14 C 0.02 0.53 5.31 85.56 0.45 0.99 16 15 C 0.45 20.35 7.62 87.66 0.67 21.02 16 16 O -0.61 -33.74 15.34 -3.06 -0.05 -33.79 16 17 N -0.59 -28.01 5.09 -306.98 -1.56 -29.57 16 18 C -0.33 -19.29 10.16 84.04 0.85 -18.44 16 19 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 20 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 21 N -0.93 -56.30 13.96 21.66 0.30 -56.00 16 22 Si 0.96 38.75 27.74 68.60 1.90 40.65 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 25 H -0.23 -7.83 6.52 99.48 0.65 -7.18 16 26 C 0.01 0.24 6.29 83.57 0.53 0.77 16 27 C -0.14 -1.30 5.56 30.68 0.17 -1.13 16 28 C 0.05 0.72 6.62 72.01 0.48 1.20 16 29 O -0.40 -7.51 10.41 -148.98 -1.55 -9.06 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.19 8.02 -2.39 -0.02 1.18 16 35 H 0.41 4.08 7.86 -92.71 -0.73 3.35 16 36 H 0.06 1.10 7.82 -2.38 -0.02 1.09 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.09 1.28 7.73 -2.39 -0.02 1.26 16 40 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.09 2.12 7.56 -2.39 -0.02 2.10 16 43 H 0.39 15.20 5.76 -92.71 -0.53 14.67 16 44 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 45 H 0.06 2.01 8.13 -2.39 -0.02 1.99 16 46 H 0.06 1.69 7.45 -2.39 -0.02 1.67 16 47 H 0.10 0.53 7.50 -2.39 -0.02 0.51 16 48 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.03 0.56 7.38 -2.39 -0.02 0.54 16 50 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -83.21 394.88 -3.47 -86.68 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.37 Total: 35.82 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.06 Total: 12.30 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -9.43 Total: -117.62 kcal Atomic # 8 Polarization: -56.20 SS G_CDS: -1.64 Total: -57.84 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 1.90 Total: 40.65 kcal Total: -83.21 -3.47 -86.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692342006.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.178 kcal (2) G-P(sol) polarization free energy of solvation -83.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds