Wall clock time and date at job start Tue Mar 31 2020 23:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20762 * 120.00405 * 2 1 4 4 C 1.50700 * 120.00101 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47669 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47394 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.46993 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99658 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00034 * 180.02562 * 7 6 5 10 10 C 1.48146 * 127.83527 * 0.02562 * 9 7 6 11 11 C 1.54389 * 104.71947 * 219.63954 * 10 9 7 12 12 H 1.08997 * 110.34484 * 94.94604 * 11 10 9 13 13 C 1.52994 * 110.34346 * 217.20744 * 11 10 9 14 14 C 1.54289 * 104.96102 * 336.07694 * 11 10 9 15 15 H 1.08999 * 110.34342 * 118.97038 * 14 11 10 16 16 N 1.46901 * 110.34318 * 241.12958 * 14 11 10 17 17 C 1.46890 * 110.99958 * 204.99856 * 16 14 11 18 18 C 1.50703 * 109.47189 * 180.02562 * 17 16 14 19 19 O 1.21290 * 119.99702 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99856 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99925 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99991 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00224 * 179.97438 * 21 20 18 24 24 N 1.31407 * 119.99916 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99993 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47251 * 89.99943 * 25 23 21 27 27 H 1.48498 * 109.47237 * 210.00316 * 25 23 21 28 28 H 1.48502 * 109.46999 * 330.00133 * 25 23 21 29 29 C 1.48427 * 127.98094 * 180.10683 * 9 7 6 30 30 H 1.08998 * 109.47061 * 269.99899 * 1 2 3 31 31 H 1.08993 * 109.47201 * 30.00173 * 1 2 3 32 32 H 1.09001 * 109.46831 * 149.99757 * 1 2 3 33 33 H 1.09010 * 109.47031 * 59.99832 * 4 2 1 34 34 H 1.08999 * 109.47653 * 300.00113 * 4 2 1 35 35 H 1.09006 * 109.46386 * 60.00001 * 5 4 2 36 36 H 1.08999 * 109.46840 * 300.00813 * 5 4 2 37 37 H 1.08996 * 109.46752 * 60.00619 * 6 5 4 38 38 H 1.08998 * 109.47172 * 299.99995 * 6 5 4 39 39 H 1.09002 * 110.40776 * 100.79701 * 10 9 7 40 40 H 1.09002 * 110.40863 * 338.48109 * 10 9 7 41 41 H 1.09001 * 109.47260 * 58.54481 * 13 11 10 42 42 H 1.09000 * 109.47306 * 178.54617 * 13 11 10 43 43 H 1.09004 * 109.46825 * 298.54469 * 13 11 10 44 44 H 1.00898 * 110.99741 * 328.95095 * 16 14 11 45 45 H 1.08998 * 109.47283 * 299.99784 * 17 16 14 46 46 H 1.08999 * 109.47630 * 59.99810 * 17 16 14 47 47 H 0.96994 * 120.00764 * 359.97438 * 20 18 17 48 48 H 0.97003 * 119.99892 * 179.97438 * 24 23 21 49 49 H 1.09004 * 110.39413 * 21.58122 * 29 9 7 50 50 H 1.09000 * 110.39150 * 259.16906 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7648 -1.0256 -0.0011 6 6 4.5297 -2.3506 -0.0011 7 6 6.0114 -2.0753 -0.0009 8 8 6.4156 -0.9318 -0.0014 9 7 6.8872 -3.0997 -0.0014 10 6 6.5884 -4.5507 -0.0026 11 6 7.6352 -5.1676 0.9500 12 1 7.2217 -5.2685 1.9533 13 6 8.0964 -6.5283 0.4241 14 6 8.8100 -4.1673 0.9522 15 1 8.9745 -3.7783 1.9571 16 7 10.0304 -4.8117 0.4488 17 6 11.2310 -4.1432 0.9676 18 6 12.4602 -4.8300 0.4304 19 8 12.3470 -5.7830 -0.3113 20 7 13.6851 -4.3859 0.7750 21 6 14.8033 -5.0111 0.2866 22 1 14.7026 -5.8597 -0.3738 23 6 16.0662 -4.5529 0.6414 24 7 16.1888 -3.5208 1.4454 25 14 17.5898 -5.4052 -0.0234 26 1 17.9922 -4.7714 -1.3047 27 1 18.6958 -5.2799 0.9596 28 1 17.2926 -6.8418 -0.2537 29 6 8.3700 -3.0337 0.0008 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.9971 -1.8763 -0.8909 34 1 1.9972 -1.8771 0.8891 35 1 4.0284 -0.4542 0.8890 36 1 4.0277 -0.4538 -0.8910 37 1 4.2661 -2.9223 -0.8909 38 1 4.2667 -2.9220 0.8891 39 1 6.6996 -4.9608 -1.0063 40 1 5.5808 -4.7316 0.3717 41 1 8.5194 -6.4080 -0.5732 42 1 8.8531 -6.9388 1.0927 43 1 7.2450 -7.2075 0.3782 44 1 10.0387 -5.7954 0.6732 45 1 11.2311 -3.0999 0.6520 46 1 11.2331 -4.1933 2.0565 47 1 13.7757 -3.6241 1.3684 48 1 17.0705 -3.2012 1.6933 49 1 8.7067 -2.0683 0.3787 50 1 8.7594 -3.2070 -1.0024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700254478.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:21 Heat of formation + Delta-G solvation = -108.786326 kcal Electronic energy + Delta-G solvation = -28762.037898 eV Core-core repulsion = 24596.243878 eV Total energy + Delta-G solvation = -4165.794020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.39547 -39.82002 -38.63877 -37.85751 -34.77243 -34.63857 -33.81655 -32.29015 -31.25030 -31.19472 -29.52385 -27.99223 -26.68087 -25.98572 -24.20627 -23.29104 -22.24187 -20.03610 -19.56513 -19.41428 -19.15265 -17.91980 -17.34487 -16.64196 -16.32895 -16.12088 -15.89288 -15.53080 -15.49346 -15.23137 -15.09815 -14.59858 -14.31259 -14.15068 -13.74832 -13.69769 -13.54652 -13.02892 -12.95792 -12.67233 -12.46869 -12.38068 -12.26729 -12.26456 -12.13881 -11.96211 -11.76311 -11.65616 -11.52870 -11.16291 -11.15007 -11.07871 -10.88480 -10.80285 -10.39445 -10.21794 -10.14364 -9.87151 -9.50977 -8.89064 -8.46463 -8.12179 -7.96297 -6.41512 -3.82535 1.56537 2.49705 2.72496 3.18157 3.26842 3.32281 3.60539 3.90338 4.07492 4.15621 4.30458 4.36057 4.46507 4.53207 4.57316 4.65132 4.69944 4.84658 4.85635 5.01390 5.09021 5.10052 5.13559 5.18598 5.20156 5.23764 5.27448 5.32651 5.39387 5.54008 5.57514 5.68713 5.73601 5.75634 5.80208 5.88522 5.94971 5.98849 6.01312 6.10221 6.24138 6.29347 7.11814 7.17812 7.41565 7.55197 7.62309 8.02759 8.06081 8.60898 9.17675 9.54264 10.05239 10.76125 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025644 B = 0.001644 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.624391 B =17028.648436 C =17857.290027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.350 3.650 3 O -0.453 6.453 4 C -0.173 4.173 5 C -0.099 4.099 6 C -0.134 4.134 7 C 0.531 3.469 8 O -0.538 6.538 9 N -0.626 5.626 10 C 0.108 3.892 11 C -0.108 4.108 12 H 0.080 0.920 13 C -0.148 4.148 14 C 0.074 3.926 15 H 0.056 0.944 16 N -0.661 5.661 17 C 0.047 3.953 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.113 3.887 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.357 0.643 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.079 0.921 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.987 -0.746 0.943 31.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.225 3.775 3 O -0.326 6.326 4 C -0.210 4.210 5 C -0.137 4.137 6 C -0.174 4.174 7 C 0.320 3.680 8 O -0.415 6.415 9 N -0.361 5.361 10 C -0.015 4.015 11 C -0.127 4.127 12 H 0.098 0.902 13 C -0.206 4.206 14 C -0.037 4.037 15 H 0.074 0.926 16 N -0.299 5.299 17 C -0.086 4.086 18 C 0.226 3.774 19 O -0.469 6.469 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.010 4.010 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.182 0.818 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.097 0.903 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -30.408 0.309 -0.070 30.409 hybrid contribution 0.878 -0.353 1.081 1.437 sum -29.530 -0.045 1.011 29.548 Atomic orbital electron populations 1.22305 0.94540 1.04769 1.04638 1.24646 0.91918 0.90413 0.70533 1.90465 1.71917 1.35201 1.35025 1.22182 0.96519 0.97624 1.04719 1.21174 0.91621 0.95889 1.04983 1.21648 0.91467 1.00020 1.04300 1.20292 0.87995 0.83765 0.75964 1.90746 1.80082 1.20720 1.49942 1.49061 1.07468 1.06315 1.73237 1.22485 0.98762 0.79969 1.00268 1.22244 0.95254 0.95766 0.99472 0.90164 1.21771 1.01092 0.94583 1.03106 1.22404 0.90421 0.94382 0.96517 0.92618 1.60312 0.99037 1.07985 1.62530 1.21767 0.90353 0.99370 0.97086 1.19769 0.84155 0.87263 0.86172 1.90514 1.86267 1.30140 1.39949 1.41865 1.04350 1.30187 1.43518 1.19704 0.83147 1.13308 1.26840 0.87899 1.25266 0.99272 0.96543 0.96821 1.69613 1.24993 1.24750 1.34843 0.85856 0.80394 0.79646 0.78374 1.20379 1.20948 1.19431 1.22493 0.78417 0.98978 1.01070 0.88716 0.89777 0.89678 0.88252 0.88267 0.90551 0.90504 0.88847 0.88918 0.90338 0.90474 0.90235 0.91921 0.92373 0.81762 0.89608 0.93769 0.77442 0.91855 0.90261 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.68 10.25 36.00 0.37 -0.31 16 2 C 0.35 2.34 7.27 -29.04 -0.21 2.13 16 3 O -0.45 -5.29 16.72 6.00 0.10 -5.19 16 4 C -0.17 -0.79 5.62 -27.88 -0.16 -0.95 16 5 C -0.10 -0.82 3.79 -26.73 -0.10 -0.92 16 6 C -0.13 -0.95 4.68 -27.88 -0.13 -1.08 16 7 C 0.53 6.33 7.92 -10.98 -0.09 6.25 16 8 O -0.54 -8.91 16.27 5.56 0.09 -8.82 16 9 N -0.63 -6.89 3.33 -169.06 -0.56 -7.46 16 10 C 0.11 0.85 6.45 -2.41 -0.02 0.84 16 11 C -0.11 -0.96 3.66 -89.22 -0.33 -1.28 16 12 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 13 C -0.15 -1.32 7.75 37.15 0.29 -1.04 16 14 C 0.07 0.89 3.39 -66.30 -0.22 0.66 16 15 H 0.06 0.67 7.82 -51.93 -0.41 0.27 16 16 N -0.66 -10.00 5.27 -106.51 -0.56 -10.56 16 17 C 0.05 0.81 6.02 -4.98 -0.03 0.78 16 18 C 0.44 10.28 7.82 -10.99 -0.09 10.19 16 19 O -0.58 -15.52 15.78 5.55 0.09 -15.43 16 20 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 21 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 22 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 25 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 C 0.11 1.46 6.76 -2.25 -0.02 1.45 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.09 8.12 -51.93 -0.42 -0.33 16 33 H 0.10 0.24 8.14 -51.92 -0.42 -0.18 16 34 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.80 8.06 -51.93 -0.42 0.39 16 36 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.45 7.95 -51.93 -0.41 0.04 16 39 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 40 H 0.08 0.40 7.30 -51.93 -0.38 0.02 16 41 H 0.08 0.86 7.65 -51.93 -0.40 0.46 16 42 H 0.06 0.61 6.89 -51.93 -0.36 0.26 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.36 5.44 5.26 -39.29 -0.21 5.23 16 45 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 47 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.08 1.13 7.90 -51.93 -0.41 0.72 16 50 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 LS Contribution 410.62 15.07 6.19 6.19 Total: -1.00 -35.99 410.62 -8.27 -44.26 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -8.29 Total: 10.44 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -0.97 Total: 8.71 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.46 Total: -56.21 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: 0.28 Total: -29.44 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.99 -8.27 -44.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700254478.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.522 kcal (2) G-P(sol) polarization free energy of solvation -35.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds