Wall clock time and date at job start Tue Mar 31 2020 23:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20762 * 120.00405 * 2 1 4 4 C 1.50700 * 120.00101 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47669 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47394 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.46993 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99658 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00034 * 180.02562 * 7 6 5 10 10 C 1.48146 * 127.83527 * 0.02562 * 9 7 6 11 11 C 1.54389 * 104.71947 * 219.63954 * 10 9 7 12 12 H 1.08997 * 110.34484 * 94.94604 * 11 10 9 13 13 C 1.52994 * 110.34346 * 217.20744 * 11 10 9 14 14 C 1.54289 * 104.96102 * 336.07694 * 11 10 9 15 15 H 1.08999 * 110.34342 * 118.97038 * 14 11 10 16 16 N 1.46901 * 110.34318 * 241.12958 * 14 11 10 17 17 C 1.46890 * 110.99958 * 204.99856 * 16 14 11 18 18 C 1.50703 * 109.47189 * 180.02562 * 17 16 14 19 19 O 1.21290 * 119.99702 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99856 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99925 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99991 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00224 * 179.97438 * 21 20 18 24 24 N 1.31407 * 119.99916 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99993 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47251 * 89.99943 * 25 23 21 27 27 H 1.48498 * 109.47237 * 210.00316 * 25 23 21 28 28 H 1.48502 * 109.46999 * 330.00133 * 25 23 21 29 29 C 1.48427 * 127.98094 * 180.10683 * 9 7 6 30 30 H 1.08998 * 109.47061 * 269.99899 * 1 2 3 31 31 H 1.08993 * 109.47201 * 30.00173 * 1 2 3 32 32 H 1.09001 * 109.46831 * 149.99757 * 1 2 3 33 33 H 1.09010 * 109.47031 * 59.99832 * 4 2 1 34 34 H 1.08999 * 109.47653 * 300.00113 * 4 2 1 35 35 H 1.09006 * 109.46386 * 60.00001 * 5 4 2 36 36 H 1.08999 * 109.46840 * 300.00813 * 5 4 2 37 37 H 1.08996 * 109.46752 * 60.00619 * 6 5 4 38 38 H 1.08998 * 109.47172 * 299.99995 * 6 5 4 39 39 H 1.09002 * 110.40776 * 100.79701 * 10 9 7 40 40 H 1.09002 * 110.40863 * 338.48109 * 10 9 7 41 41 H 1.09001 * 109.47260 * 58.54481 * 13 11 10 42 42 H 1.09000 * 109.47306 * 178.54617 * 13 11 10 43 43 H 1.09004 * 109.46825 * 298.54469 * 13 11 10 44 44 H 1.00898 * 110.99741 * 328.95095 * 16 14 11 45 45 H 1.08998 * 109.47283 * 299.99784 * 17 16 14 46 46 H 1.08999 * 109.47630 * 59.99810 * 17 16 14 47 47 H 0.96994 * 120.00764 * 359.97438 * 20 18 17 48 48 H 0.97003 * 119.99892 * 179.97438 * 24 23 21 49 49 H 1.09004 * 110.39413 * 21.58122 * 29 9 7 50 50 H 1.09000 * 110.39150 * 259.16906 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7648 -1.0256 -0.0011 6 6 4.5297 -2.3506 -0.0011 7 6 6.0114 -2.0753 -0.0009 8 8 6.4156 -0.9318 -0.0014 9 7 6.8872 -3.0997 -0.0014 10 6 6.5884 -4.5507 -0.0026 11 6 7.6352 -5.1676 0.9500 12 1 7.2217 -5.2685 1.9533 13 6 8.0964 -6.5283 0.4241 14 6 8.8100 -4.1673 0.9522 15 1 8.9745 -3.7783 1.9571 16 7 10.0304 -4.8117 0.4488 17 6 11.2310 -4.1432 0.9676 18 6 12.4602 -4.8300 0.4304 19 8 12.3470 -5.7830 -0.3113 20 7 13.6851 -4.3859 0.7750 21 6 14.8033 -5.0111 0.2866 22 1 14.7026 -5.8597 -0.3738 23 6 16.0662 -4.5529 0.6414 24 7 16.1888 -3.5208 1.4454 25 14 17.5898 -5.4052 -0.0234 26 1 17.9922 -4.7714 -1.3047 27 1 18.6958 -5.2799 0.9596 28 1 17.2926 -6.8418 -0.2537 29 6 8.3700 -3.0337 0.0008 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.9971 -1.8763 -0.8909 34 1 1.9972 -1.8771 0.8891 35 1 4.0284 -0.4542 0.8890 36 1 4.0277 -0.4538 -0.8910 37 1 4.2661 -2.9223 -0.8909 38 1 4.2667 -2.9220 0.8891 39 1 6.6996 -4.9608 -1.0063 40 1 5.5808 -4.7316 0.3717 41 1 8.5194 -6.4080 -0.5732 42 1 8.8531 -6.9388 1.0927 43 1 7.2450 -7.2075 0.3782 44 1 10.0387 -5.7954 0.6732 45 1 11.2311 -3.0999 0.6520 46 1 11.2331 -4.1933 2.0565 47 1 13.7757 -3.6241 1.3684 48 1 17.0705 -3.2012 1.6933 49 1 8.7067 -2.0683 0.3787 50 1 8.7594 -3.2070 -1.0024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700254478.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:21 Heat of formation + Delta-G solvation = -135.741316 kcal Electronic energy + Delta-G solvation = -28763.206754 eV Core-core repulsion = 24596.243878 eV Total energy + Delta-G solvation = -4166.962876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.28622 -40.46321 -40.14105 -39.16939 -36.20654 -35.57786 -35.26389 -33.39936 -33.08236 -31.72174 -30.39593 -28.85424 -27.67980 -27.16021 -25.78750 -24.24839 -22.91739 -21.17495 -20.54936 -20.36882 -20.17104 -19.89584 -18.27570 -17.66840 -17.29618 -16.99600 -16.89676 -16.81482 -16.45163 -16.17839 -16.08775 -15.71394 -15.67672 -15.38659 -15.19344 -14.73272 -14.50192 -14.03271 -13.93242 -13.58538 -13.46168 -13.36218 -13.14981 -13.05703 -13.00127 -12.88722 -12.74757 -12.72426 -12.70707 -12.42308 -12.34576 -12.12360 -12.03045 -11.76389 -11.70470 -11.65485 -11.51209 -10.98176 -10.51677 -10.34809 -10.02901 -9.81676 -9.37781 -8.47426 -5.96574 1.09606 1.37676 1.41405 1.54323 1.61700 1.88455 2.03453 2.28599 2.91750 3.19755 3.20541 3.39683 3.51444 3.60276 3.79230 3.96239 4.06912 4.08452 4.15216 4.26379 4.28522 4.38924 4.44827 4.48108 4.52280 4.56086 4.59656 4.63350 4.71649 4.74807 4.78643 4.81208 4.83525 4.90146 4.95556 5.04897 5.17352 5.17838 5.23080 5.28652 5.38582 5.40044 5.52420 5.87396 6.07601 6.41191 6.58243 6.59699 6.67735 7.11099 7.14098 7.54630 8.09012 8.69973 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025644 B = 0.001644 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.624391 B =17028.648436 C =17857.290027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.346 3.654 3 O -0.520 6.520 4 C -0.165 4.165 5 C -0.099 4.099 6 C -0.120 4.120 7 C 0.519 3.481 8 O -0.600 6.600 9 N -0.624 5.624 10 C 0.109 3.891 11 C -0.100 4.100 12 H 0.104 0.896 13 C -0.144 4.144 14 C 0.076 3.924 15 H 0.059 0.941 16 N -0.670 5.670 17 C 0.061 3.939 18 C 0.440 3.560 19 O -0.619 6.619 20 N -0.574 5.574 21 C -0.335 4.335 22 H 0.081 0.919 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.270 1.270 29 C 0.112 3.888 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.087 0.913 44 H 0.357 0.643 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.055 0.945 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.816 -3.221 1.590 34.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.226 3.774 3 O -0.398 6.398 4 C -0.201 4.201 5 C -0.137 4.137 6 C -0.160 4.160 7 C 0.311 3.689 8 O -0.481 6.481 9 N -0.357 5.357 10 C -0.013 4.013 11 C -0.119 4.119 12 H 0.122 0.878 13 C -0.201 4.201 14 C -0.035 4.035 15 H 0.077 0.923 16 N -0.308 5.308 17 C -0.072 4.072 18 C 0.227 3.773 19 O -0.505 6.505 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.099 0.901 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.195 1.195 29 C -0.012 4.012 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.135 0.865 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.101 0.899 40 H 0.140 0.860 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.183 0.817 45 H 0.111 0.889 46 H 0.084 0.916 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -33.279 -2.207 0.589 33.357 hybrid contribution 1.717 0.413 0.857 1.963 sum -31.561 -1.794 1.447 31.645 Atomic orbital electron populations 1.22328 0.91736 1.05821 1.05856 1.25462 0.93717 0.90322 0.67924 1.90463 1.73390 1.37488 1.38443 1.22239 0.92946 0.97036 1.07915 1.21092 0.94912 0.96020 1.01666 1.21706 0.86948 0.99758 1.07539 1.21355 0.90095 0.82919 0.74541 1.90723 1.81318 1.23332 1.52705 1.49166 1.06242 1.07923 1.72389 1.22732 1.00662 0.77323 1.00590 1.22275 0.93884 0.94593 1.01152 0.87792 1.21715 1.01853 0.95206 1.01367 1.22422 0.90299 0.94896 0.95894 0.92335 1.60262 0.99292 1.08058 1.63162 1.21600 0.88563 0.98955 0.98049 1.20766 0.85142 0.86527 0.84855 1.90480 1.87002 1.31740 1.41299 1.41949 1.04687 1.30447 1.44005 1.19700 0.84805 1.13843 1.28054 0.90064 1.26068 1.01593 0.96988 0.96678 1.69681 1.25987 1.25387 1.35179 0.84908 0.76845 0.78408 0.78054 1.19811 1.19573 1.19476 1.22310 0.80477 0.98259 1.00185 0.87207 0.90888 0.86457 0.84842 0.84689 0.93957 0.94153 0.85498 0.85133 0.89938 0.86036 0.92552 0.93022 0.89397 0.81718 0.88901 0.91550 0.77122 0.91336 0.92678 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.84 10.25 71.24 0.73 -0.11 16 2 C 0.35 4.26 7.27 29.10 0.21 4.48 16 3 O -0.52 -12.97 16.72 -1.46 -0.02 -12.99 16 4 C -0.16 -0.97 5.62 29.85 0.17 -0.80 16 5 C -0.10 -1.57 3.79 30.59 0.12 -1.46 16 6 C -0.12 -1.31 4.68 29.85 0.14 -1.17 16 7 C 0.52 12.04 7.92 87.66 0.69 12.73 16 8 O -0.60 -21.05 16.27 -3.03 -0.05 -21.10 16 9 N -0.62 -12.85 3.33 -807.18 -2.69 -15.54 16 10 C 0.11 1.29 6.45 86.53 0.56 1.85 16 11 C -0.10 -1.46 3.66 -9.89 -0.04 -1.50 16 12 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 13 C -0.14 -2.22 7.75 71.98 0.56 -1.66 16 14 C 0.08 1.74 3.39 45.83 0.16 1.89 16 15 H 0.06 1.34 7.82 -2.39 -0.02 1.32 16 16 N -0.67 -20.17 5.27 -490.89 -2.59 -22.75 16 17 C 0.06 2.12 6.02 85.56 0.51 2.64 16 18 C 0.44 20.99 7.82 87.66 0.69 21.68 16 19 O -0.62 -33.80 15.78 -3.06 -0.05 -33.85 16 20 N -0.57 -29.85 5.29 -306.98 -1.62 -31.48 16 21 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16 22 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 24 N -0.92 -50.50 13.05 21.66 0.28 -50.22 16 25 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 29 C 0.11 2.94 6.76 86.48 0.58 3.53 16 30 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.12 -0.25 8.12 -2.39 -0.02 -0.27 16 33 H 0.13 -0.03 8.14 -2.38 -0.02 -0.05 16 34 H 0.14 -0.08 8.14 -2.39 -0.02 -0.10 16 35 H 0.04 0.94 8.06 -2.38 -0.02 0.92 16 36 H 0.04 0.92 8.06 -2.39 -0.02 0.90 16 37 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.13 0.51 7.95 -2.39 -0.02 0.49 16 39 H 0.08 0.98 7.86 -2.39 -0.02 0.96 16 40 H 0.12 0.45 7.30 -2.39 -0.02 0.43 16 41 H 0.06 1.15 7.65 -2.39 -0.02 1.13 16 42 H 0.05 0.92 6.89 -2.39 -0.02 0.91 16 43 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.36 10.78 5.26 -89.70 -0.47 10.30 16 45 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 46 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 47 H 0.40 19.74 7.90 -92.71 -0.73 19.00 16 48 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 49 H 0.05 1.68 7.90 -2.38 -0.02 1.66 16 50 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 Total: -1.00 -86.56 410.62 1.40 -85.16 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: -0.25 Total: 34.01 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: 6.36 Total: 23.49 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -6.61 Total: -119.99 kcal Atomic # 8 Polarization: -67.82 SS G_CDS: -0.12 Total: -67.94 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -86.56 1.40 -85.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700254478.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.579 kcal (2) G-P(sol) polarization free energy of solvation -86.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds