Wall clock time and date at job start Tue Mar 31 2020 23:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 115.55054 * 2 1 4 4 C 1.53003 * 117.51523 * 145.69579 * 2 1 3 5 5 C 1.52994 * 117.50101 * 214.32574 * 2 1 3 6 6 H 1.09001 * 117.50145 * 144.97843 * 5 2 1 7 7 C 1.50696 * 117.50085 * 359.97438 * 5 2 1 8 8 O 1.21280 * 119.99848 * 359.97438 * 7 5 2 9 9 N 1.34778 * 120.00730 * 180.02562 * 7 5 2 10 10 C 1.46919 * 120.63560 * 179.97438 * 9 7 5 11 11 C 1.53191 * 108.77687 * 233.58507 * 10 9 7 12 12 C 1.53039 * 109.31378 * 305.36554 * 11 10 9 13 13 O 1.42906 * 109.45872 * 301.35954 * 12 11 10 14 14 C 1.52993 * 109.46086 * 181.38762 * 12 11 10 15 15 N 1.46901 * 109.46977 * 185.00061 * 14 12 11 16 16 C 1.46902 * 110.99844 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.47027 * 179.97438 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99928 * 179.72353 * 17 16 15 20 20 C 1.37101 * 120.00327 * 180.27606 * 19 17 16 21 21 H 1.08001 * 119.99426 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00412 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00057 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46867 * 90.00263 * 24 22 20 26 26 H 1.48501 * 109.47216 * 210.00120 * 24 22 20 27 27 H 1.48499 * 109.47135 * 330.00462 * 24 22 20 28 28 C 1.53043 * 109.53845 * 61.36372 * 12 11 10 29 29 C 1.46933 * 120.62454 * 359.97438 * 9 7 5 30 30 H 1.08999 * 109.47704 * 205.66835 * 1 2 3 31 31 H 1.09003 * 109.47215 * 325.67457 * 1 2 3 32 32 H 1.09001 * 109.46835 * 85.67269 * 1 2 3 33 33 H 1.08994 * 117.49894 * 0.02562 * 4 2 1 34 34 H 1.09007 * 117.49910 * 214.97156 * 4 2 1 35 35 H 1.09005 * 109.58552 * 113.79449 * 10 9 7 36 36 H 1.09001 * 109.70553 * 353.44613 * 10 9 7 37 37 H 1.09002 * 109.49834 * 185.41143 * 11 10 9 38 38 H 1.08996 * 109.49777 * 65.32112 * 11 10 9 39 39 H 0.96698 * 114.00051 * 180.02562 * 13 12 11 40 40 H 1.08997 * 109.47854 * 64.99950 * 14 12 11 41 41 H 1.09005 * 109.47140 * 304.99831 * 14 12 11 42 42 H 1.00902 * 111.00235 * 56.04818 * 15 14 12 43 43 H 1.09004 * 109.47131 * 60.00016 * 16 15 14 44 44 H 1.09000 * 109.47732 * 300.00127 * 16 15 14 45 45 H 0.97000 * 120.00317 * 0.28382 * 19 17 16 46 46 H 0.96996 * 120.00330 * 179.97438 * 23 22 20 47 47 H 1.08991 * 109.49653 * 58.58296 * 28 12 11 48 48 H 1.08996 * 109.49472 * 178.68802 * 28 12 11 49 49 H 1.08997 * 109.58385 * 246.20008 * 29 9 7 50 50 H 1.08997 * 109.58625 * 6.48203 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2368 -1.1209 0.7648 5 6 2.2364 -1.1207 -0.7652 6 1 3.1711 -0.8746 -1.2691 7 6 1.3721 -2.1405 -1.4609 8 8 0.1639 -2.0538 -1.4005 9 7 1.9416 -3.1497 -2.1492 10 6 1.1122 -4.1518 -2.8321 11 6 1.5450 -5.5471 -2.3710 12 6 3.0487 -5.7127 -2.6022 13 8 3.3406 -5.5267 -3.9887 14 6 3.4784 -7.1175 -2.1749 15 7 4.9385 -7.2373 -2.2836 16 6 5.3884 -8.5762 -1.8799 17 6 6.8878 -8.6612 -2.0050 18 8 7.5196 -7.7008 -2.3919 19 7 7.5274 -9.8025 -1.6811 20 6 8.8920 -9.8781 -1.7895 21 1 9.4545 -9.0229 -2.1341 22 6 9.5513 -11.0548 -1.4561 23 7 8.8669 -12.0955 -1.0374 24 14 11.4106 -11.1579 -1.6045 25 1 12.0334 -10.7383 -0.3234 26 1 11.8058 -12.5559 -1.9125 27 1 11.8706 -10.2616 -2.6955 28 6 3.8109 -4.6733 -1.7770 29 6 3.4038 -3.2684 -2.2310 30 1 -0.3634 -0.9262 0.4451 31 1 -0.3634 0.8487 0.5795 32 1 -0.3633 0.0775 -1.0248 33 1 1.6118 -1.8588 1.2677 34 1 3.1720 -0.8750 1.2679 35 1 1.2475 -4.0648 -3.9102 36 1 0.0633 -3.9932 -2.5816 37 1 1.0039 -6.3026 -2.9407 38 1 1.3249 -5.6642 -1.3100 39 1 4.2778 -5.6179 -4.2090 40 1 3.0042 -7.8553 -2.8221 41 1 3.1755 -7.2919 -1.1424 42 1 5.4013 -6.5223 -1.7426 43 1 4.9273 -9.3243 -2.5249 44 1 5.0987 -8.7603 -0.8453 45 1 7.0222 -10.5705 -1.3714 46 1 9.3271 -12.9171 -0.8050 47 1 3.5695 -4.7985 -0.7216 48 1 4.8826 -4.8069 -1.9240 49 1 3.7263 -3.1093 -3.2599 50 1 3.8676 -2.5243 -1.5835 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700299392.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:21 Heat of formation + Delta-G solvation = -93.340304 kcal Electronic energy + Delta-G solvation = -29881.338623 eV Core-core repulsion = 25716.214393 eV Total energy + Delta-G solvation = -4165.124230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.84700 -39.36778 -38.23614 -36.96264 -35.76073 -34.74718 -33.84191 -32.14614 -31.37592 -31.18532 -28.98368 -28.11894 -26.07729 -24.74929 -23.77035 -23.67234 -22.15622 -21.27657 -20.37001 -19.35561 -18.90657 -17.98799 -17.74240 -16.78178 -16.08605 -15.96825 -15.77618 -15.51297 -15.24668 -14.91666 -14.72906 -14.38589 -14.19204 -14.06333 -13.77536 -13.61631 -13.38299 -13.15500 -12.96578 -12.85278 -12.73102 -12.44517 -12.40653 -12.03466 -11.78934 -11.76269 -11.69212 -11.56809 -11.40343 -11.34848 -11.07378 -10.62436 -10.57097 -10.43302 -10.34404 -10.26369 -9.95757 -9.71286 -9.56117 -8.84344 -8.54467 -8.19825 -8.01848 -6.46569 -3.87765 2.25545 2.70771 3.14121 3.23355 3.29025 3.46712 3.84250 3.96950 4.10336 4.15139 4.22537 4.31423 4.45194 4.50281 4.65295 4.67777 4.75760 4.85239 5.02058 5.05180 5.06693 5.18537 5.20209 5.31146 5.32153 5.39533 5.44191 5.49036 5.52940 5.57741 5.60900 5.71648 5.72261 5.73703 5.76536 5.83219 5.87797 5.90057 6.06440 6.19005 6.22267 6.32398 7.03587 7.18207 7.49128 7.50437 7.72668 7.97464 8.00642 8.55172 9.12437 9.48491 9.99175 10.70998 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021857 B = 0.001935 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.744526 B =14463.149984 C =15133.514279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.120 4.120 3 H 0.110 0.890 4 C -0.150 4.150 5 C -0.196 4.196 6 H 0.124 0.876 7 C 0.545 3.455 8 O -0.540 6.540 9 N -0.606 5.606 10 C 0.119 3.881 11 C -0.119 4.119 12 C 0.144 3.856 13 O -0.555 6.555 14 C 0.031 3.969 15 N -0.670 5.670 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.585 6.585 19 N -0.562 5.562 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.269 1.269 28 C -0.168 4.168 29 C 0.114 3.886 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.389 0.611 40 H 0.081 0.919 41 H 0.034 0.966 42 H 0.347 0.653 43 H 0.087 0.913 44 H 0.044 0.956 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.073 0.927 48 H 0.091 0.909 49 H 0.077 0.923 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.742 17.838 1.936 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 H 0.128 0.872 4 C -0.187 4.187 5 C -0.217 4.217 6 H 0.141 0.859 7 C 0.334 3.666 8 O -0.418 6.418 9 N -0.339 5.339 10 C -0.004 4.004 11 C -0.157 4.157 12 C 0.102 3.898 13 O -0.362 6.362 14 C -0.099 4.099 15 N -0.304 5.304 16 C -0.081 4.081 17 C 0.225 3.775 18 O -0.470 6.470 19 N -0.198 5.198 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.206 4.206 29 C -0.008 4.008 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.238 0.762 40 H 0.100 0.900 41 H 0.052 0.948 42 H 0.168 0.832 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.226 0.774 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.109 0.891 49 H 0.095 0.905 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.533 18.254 1.052 24.651 hybrid contribution 1.443 -0.981 1.148 2.088 sum -15.091 17.273 2.200 23.042 Atomic orbital electron populations 1.21353 0.91480 1.01384 1.02545 1.22383 0.96615 0.93555 1.01310 0.87157 1.23083 1.03148 1.01853 0.90645 1.22321 1.02160 1.01261 0.95945 0.85853 1.19673 0.87889 0.81100 0.77986 1.90681 1.14550 1.74831 1.61763 1.48074 1.07296 1.26825 1.51659 1.21485 0.95644 0.86139 0.97095 1.21877 0.94081 0.97686 1.02096 1.21002 0.94169 0.92184 0.82430 1.86394 1.32422 1.94121 1.23280 1.22699 0.89678 0.97727 0.99789 1.60109 1.03766 1.04676 1.61805 1.21667 0.95760 0.91667 0.99054 1.19774 0.88251 0.84679 0.84772 1.90512 1.67685 1.37266 1.51513 1.41868 1.07852 1.12267 1.57857 1.19701 0.81856 0.99557 1.41896 0.87883 1.25278 1.00698 0.94996 0.96966 1.69610 1.36612 1.03229 1.44738 0.85846 0.82116 0.77470 0.78791 1.20412 1.20888 1.19377 1.22646 1.01951 0.95245 1.00777 1.21672 0.79428 0.97251 1.02490 0.91804 0.93320 0.91423 0.88275 0.87746 0.90539 0.89215 0.89790 0.90522 0.76177 0.90019 0.94785 0.83188 0.89507 0.93824 0.77446 0.91817 0.90817 0.89092 0.90507 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 8.43 37.15 0.31 -0.68 16 2 C -0.12 -0.93 6.41 -90.62 -0.58 -1.51 16 3 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.15 -1.08 9.88 -26.73 -0.26 -1.34 16 5 C -0.20 -1.61 4.96 -91.78 -0.46 -2.07 16 6 H 0.12 0.81 6.82 -51.93 -0.35 0.46 16 7 C 0.54 5.91 7.46 -10.99 -0.08 5.83 16 8 O -0.54 -7.31 12.52 5.56 0.07 -7.24 16 9 N -0.61 -5.95 2.97 -172.79 -0.51 -6.46 16 10 C 0.12 1.18 6.19 -3.71 -0.02 1.16 16 11 C -0.12 -1.10 5.11 -26.61 -0.14 -1.23 16 12 C 0.14 1.43 0.79 -90.58 -0.07 1.36 16 13 O -0.55 -6.18 11.70 -35.23 -0.41 -6.59 16 14 C 0.03 0.35 4.93 -3.83 -0.02 0.33 16 15 N -0.67 -9.60 5.65 -115.06 -0.65 -10.24 16 16 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 17 C 0.44 9.97 7.82 -10.98 -0.09 9.88 16 18 O -0.59 -15.15 15.78 5.55 0.09 -15.07 16 19 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 20 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.14 13.05 55.50 0.72 -23.41 16 24 Si 0.93 20.69 29.55 -169.99 -5.02 15.66 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 28 C -0.17 -1.51 4.67 -26.63 -0.12 -1.63 16 29 C 0.11 0.96 6.06 -3.73 -0.02 0.93 16 30 H 0.06 0.67 7.01 -51.93 -0.36 0.30 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.71 7.26 -51.93 -0.38 0.33 16 33 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.80 7.81 -51.93 -0.41 0.39 16 36 H 0.09 0.96 7.01 -51.93 -0.36 0.59 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.39 4.22 8.66 45.56 0.39 4.61 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.35 5.05 6.28 -39.29 -0.25 4.80 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.39 9.30 7.90 -40.82 -0.32 8.97 16 46 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.09 0.87 6.44 -51.93 -0.33 0.54 16 49 H 0.08 0.66 7.81 -51.93 -0.41 0.25 16 50 H 0.09 0.58 5.67 -51.93 -0.29 0.29 16 LS Contribution 395.48 15.07 5.96 5.96 Total: -1.00 -31.68 395.48 -8.87 -40.55 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -7.23 Total: 16.82 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.82 Total: 3.98 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.50 Total: -54.07 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.26 Total: -28.90 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.68 -8.87 -40.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700299392.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.787 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds