Wall clock time and date at job start Tue Mar 31 2020 22:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46991 * 2 1 4 4 O 1.21284 * 119.99925 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99907 * 179.97438 * 3 2 1 6 6 C 1.46494 * 120.00002 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.46803 * 35.00490 * 6 5 3 8 8 C 1.53000 * 109.47237 * 275.00253 * 6 5 3 9 9 C 1.50697 * 109.47250 * 154.99841 * 6 5 3 10 10 O 1.21287 * 119.99898 * 28.18658 * 9 6 5 11 11 N 1.34771 * 120.00576 * 208.18010 * 9 6 5 12 12 C 1.47081 * 125.62819 * 5.93454 * 11 9 6 13 13 C 1.54475 * 107.29145 * 178.91099 * 12 11 9 14 14 C 1.54367 * 102.94977 * 338.83671 * 13 12 11 15 15 C 1.47578 * 125.63486 * 186.23865 * 11 9 6 16 16 C 1.52363 * 110.39461 * 152.20081 * 14 13 12 17 17 N 1.47323 * 108.43595 * 73.53253 * 16 14 13 18 18 C 1.36934 * 121.08156 * 229.17140 * 17 16 14 19 19 H 1.08001 * 120.00014 * 152.93858 * 18 17 16 20 20 C 1.38814 * 120.00243 * 332.94330 * 18 17 16 21 21 N 1.31618 * 119.99476 * 346.27644 * 20 18 17 22 22 Si 1.86793 * 120.00323 * 166.27282 * 20 18 17 23 23 H 1.48500 * 109.47103 * 89.99814 * 22 20 18 24 24 H 1.48496 * 109.47344 * 210.00053 * 22 20 18 25 25 H 1.48504 * 109.47094 * 330.00058 * 22 20 18 26 26 C 1.47169 * 117.84215 * 49.15381 * 17 16 14 27 27 C 1.53286 * 108.54926 * 308.73714 * 26 17 16 28 28 O 1.41876 * 110.73097 * 276.13361 * 14 13 12 29 29 H 1.08996 * 109.47278 * 59.99835 * 1 2 3 30 30 H 1.09001 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47039 * 299.99941 * 1 2 3 32 32 H 1.08998 * 109.47039 * 240.00059 * 2 1 3 33 33 H 1.08996 * 109.47278 * 120.00165 * 2 1 3 34 34 H 0.97000 * 120.00189 * 0.02562 * 5 3 2 35 35 H 1.09001 * 109.47001 * 175.63020 * 8 6 5 36 36 H 1.08995 * 109.47054 * 55.63199 * 8 6 5 37 37 H 1.08996 * 109.47236 * 295.62794 * 8 6 5 38 38 H 1.09005 * 109.88081 * 298.46655 * 12 11 9 39 39 H 1.09000 * 109.88088 * 59.61648 * 12 11 9 40 40 H 1.09009 * 110.86189 * 220.38762 * 13 12 11 41 41 H 1.08997 * 110.68208 * 97.20549 * 13 12 11 42 42 H 1.09001 * 110.37118 * 322.11538 * 15 11 9 43 43 H 1.09001 * 110.37483 * 84.35049 * 15 11 9 44 44 H 1.08993 * 109.64341 * 193.22135 * 16 14 13 45 45 H 1.09000 * 109.64011 * 313.63943 * 16 14 13 46 46 H 0.97006 * 119.99911 * 180.02562 * 21 20 18 47 47 H 1.08994 * 109.62408 * 68.45371 * 26 17 16 48 48 H 1.09004 * 109.62625 * 188.83417 * 26 17 16 49 49 H 1.09003 * 109.50833 * 172.96515 * 27 26 17 50 50 H 1.08994 * 109.51199 * 293.11114 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0483 0.0000 7 1 3.1729 3.6717 0.5888 8 6 3.8979 3.5702 -1.4373 9 6 5.2269 3.0931 0.6011 10 8 5.9533 2.1248 0.5245 11 7 5.6551 4.2090 1.2238 12 6 4.8418 5.4038 1.4961 13 6 5.7410 6.4097 2.2484 14 6 6.8527 5.5111 2.8313 15 6 7.0190 4.4364 1.7394 16 6 8.1422 6.3046 3.0013 17 7 7.9827 7.2121 4.1509 18 6 8.3021 8.5401 4.0529 19 1 7.8077 9.2625 4.6855 20 6 9.2611 8.9578 3.1404 21 7 10.0515 8.0758 2.5663 22 14 9.4297 10.7716 2.7271 23 1 10.3987 11.4035 3.6582 24 1 9.9163 10.9183 1.3318 25 1 8.1081 11.4352 2.8627 26 6 7.4686 6.6452 5.4079 27 6 6.1820 5.8697 5.1030 28 8 6.4366 4.9279 4.0559 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9878 0.9299 0.0005 35 1 4.1866 4.6213 -1.4319 36 1 2.9155 3.4657 -1.8977 37 1 4.6287 2.9956 -2.0063 38 1 4.4983 5.8402 0.5581 39 1 3.9872 5.1367 2.1177 40 1 5.1869 6.9046 3.0461 41 1 6.1593 7.1427 1.5587 42 1 7.4204 3.5183 2.1685 43 1 7.6699 4.7988 0.9437 44 1 8.9711 5.6215 3.1860 45 1 8.3382 6.8829 2.0984 46 1 10.7220 8.3677 1.9289 47 1 8.2101 5.9703 5.8354 48 1 7.2563 7.4494 6.1124 49 1 5.8555 5.3400 5.9979 50 1 5.4044 6.5648 4.7864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700560283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:25 Heat of formation + Delta-G solvation = -87.373830 kcal Electronic energy + Delta-G solvation = -31129.523782 eV Core-core repulsion = 26964.658278 eV Total energy + Delta-G solvation = -4164.865505 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.69241 -39.83209 -38.74229 -36.26441 -35.14611 -34.50903 -33.16671 -31.84663 -31.32460 -30.47510 -29.61057 -27.53552 -26.10611 -25.24434 -23.91423 -23.30545 -22.47413 -21.35553 -20.48145 -19.48949 -18.81504 -17.86095 -17.16624 -16.64776 -16.52899 -16.01522 -15.77853 -15.39422 -15.04032 -14.79706 -14.42732 -14.34693 -14.14200 -14.00051 -13.62424 -13.42748 -13.14044 -12.94136 -12.78388 -12.76270 -12.54147 -12.37392 -12.26910 -12.16105 -12.03665 -11.82235 -11.45377 -11.39963 -11.10182 -10.97607 -10.91652 -10.73665 -10.35113 -10.33847 -10.11072 -10.02998 -9.90712 -9.60154 -9.36319 -9.09339 -8.62176 -8.55445 -6.79485 -5.90545 -3.35393 2.34645 2.49127 2.71104 3.23520 3.29527 3.37080 3.37867 4.11017 4.31439 4.37551 4.48622 4.77112 4.77592 4.81728 4.90724 4.91592 4.99595 5.18668 5.24131 5.29720 5.36885 5.41479 5.49472 5.52409 5.55988 5.63623 5.64336 5.76975 5.81802 5.89965 5.91846 5.92289 5.98811 6.08072 6.13982 6.19734 6.26600 6.36623 6.46154 6.58158 6.74263 7.00634 7.26628 7.38566 7.51550 7.65003 7.87682 7.97854 8.06044 8.26602 9.04720 9.66895 10.24815 11.17762 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020503 B = 0.002612 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.330441 B =10717.852079 C =11083.447884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.514 3.486 4 O -0.542 6.542 5 N -0.716 5.716 6 C 0.129 3.871 7 H 0.107 0.893 8 C -0.154 4.154 9 C 0.527 3.473 10 O -0.543 6.543 11 N -0.604 5.604 12 C 0.099 3.901 13 C -0.143 4.143 14 C 0.085 3.915 15 C 0.123 3.877 16 C 0.164 3.836 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.068 0.932 20 C 0.003 3.997 21 N -0.905 5.905 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.374 6.374 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.410 0.590 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.030 0.970 45 H 0.099 0.901 46 H 0.256 0.744 47 H 0.027 0.973 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.502 -11.919 -5.443 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.301 3.699 4 O -0.418 6.418 5 N -0.371 5.371 6 C 0.020 3.980 7 H 0.125 0.875 8 C -0.213 4.213 9 C 0.314 3.686 10 O -0.421 6.421 11 N -0.337 5.337 12 C -0.024 4.024 13 C -0.181 4.181 14 C 0.043 3.957 15 C 0.001 3.999 16 C 0.037 3.963 17 N -0.316 5.316 18 C -0.381 4.381 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.549 5.549 22 Si 0.734 3.266 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.204 1.204 26 C -0.018 4.018 27 C -0.032 4.032 28 O -0.293 6.293 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.247 0.753 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.048 0.952 45 H 0.117 0.883 46 H 0.066 0.934 47 H 0.044 0.956 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.584 -11.967 -5.605 19.681 hybrid contribution 0.624 0.968 -0.134 1.160 sum -13.960 -10.999 -5.740 18.676 Atomic orbital electron populations 1.21531 0.92875 1.01611 1.03410 1.21631 0.98679 0.93435 1.04610 1.20839 0.81640 0.92123 0.75314 1.90704 1.55222 1.46514 1.49400 1.45893 1.07585 1.08018 1.75557 1.20747 0.93361 0.85277 0.98599 0.87496 1.22044 1.03420 1.01833 0.93997 1.20107 0.88563 0.81819 0.78111 1.90686 1.57387 1.34295 1.59762 1.48498 1.13380 1.15389 1.56405 1.22212 0.94738 0.85618 0.99795 1.23035 0.97310 0.97283 1.00516 1.22710 0.96878 0.92109 0.84005 1.22168 0.82926 0.99631 0.95174 1.21142 0.89694 0.91617 0.93811 1.44043 1.76178 1.06144 1.05259 1.19156 1.16035 0.82321 1.20615 0.91398 1.25078 0.95583 0.97696 1.01192 1.69978 1.20837 1.32583 1.31520 0.86266 0.77915 0.84813 0.77602 1.21313 1.21478 1.20437 1.21599 0.93568 0.96319 0.90271 1.23096 0.98125 0.92276 0.89656 1.87648 1.87920 1.33494 1.20257 0.91970 0.92038 0.91919 0.88760 0.88721 0.75323 0.90832 0.90828 0.91601 0.91316 0.91478 0.89420 0.89255 0.89598 0.89412 0.95208 0.88261 0.93406 0.95551 0.91874 0.89966 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.20 37.16 0.34 -0.66 16 2 C -0.14 -1.02 6.42 -27.88 -0.18 -1.20 16 3 C 0.51 5.59 7.79 -10.98 -0.09 5.50 16 4 O -0.54 -7.71 15.64 5.55 0.09 -7.63 16 5 N -0.72 -7.77 5.06 -54.94 -0.28 -8.04 16 6 C 0.13 1.55 2.58 -69.09 -0.18 1.37 16 7 H 0.11 1.34 6.58 -51.93 -0.34 1.00 16 8 C -0.15 -1.61 9.47 37.16 0.35 -1.25 16 9 C 0.53 7.75 7.03 -10.99 -0.08 7.67 16 10 O -0.54 -9.34 16.31 5.55 0.09 -9.25 16 11 N -0.60 -9.06 3.33 -170.75 -0.57 -9.63 16 12 C 0.10 1.32 6.09 -2.95 -0.02 1.30 16 13 C -0.14 -2.28 5.87 -25.24 -0.15 -2.43 16 14 C 0.09 1.55 0.84 -89.65 -0.08 1.47 16 15 C 0.12 2.08 6.11 -2.87 -0.02 2.07 16 16 C 0.16 3.65 4.04 -3.92 -0.02 3.64 16 17 N -0.59 -13.95 2.98 -172.25 -0.51 -14.46 16 18 C -0.25 -6.47 9.67 -15.06 -0.15 -6.62 16 19 H 0.07 1.71 7.87 -52.49 -0.41 1.30 16 20 C 0.00 0.08 5.02 -17.43 -0.09 -0.01 16 21 N -0.90 -24.86 11.03 55.49 0.61 -24.25 16 22 Si 0.90 20.63 29.58 -169.99 -5.03 15.61 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.11 2.18 6.71 -3.53 -0.02 2.15 16 27 C 0.05 0.79 6.78 37.31 0.25 1.04 16 28 O -0.37 -7.04 10.28 -35.22 -0.36 -7.40 16 29 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.41 4.07 7.82 -40.82 -0.32 3.75 16 35 H 0.07 0.71 7.97 -51.93 -0.41 0.29 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.77 7.97 -51.93 -0.41 0.35 16 39 H 0.07 0.86 7.94 -51.93 -0.41 0.44 16 40 H 0.09 1.41 6.09 -51.92 -0.32 1.09 16 41 H 0.09 1.48 7.82 -51.93 -0.41 1.07 16 42 H 0.09 1.55 8.00 -51.93 -0.42 1.14 16 43 H 0.09 1.45 8.00 -51.93 -0.42 1.03 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.10 2.41 5.95 -51.93 -0.31 2.10 16 46 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 49 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 50 H 0.05 0.78 6.23 -51.93 -0.32 0.46 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -31.53 395.01 -8.38 -39.92 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -8.27 Total: 5.14 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -0.11 Total: 14.06 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.75 Total: -56.38 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.18 Total: -24.28 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.53 -8.38 -39.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700560283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.459 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds