Wall clock time and date at job start Tue Mar 31 2020 22:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46991 * 2 1 4 4 O 1.21284 * 119.99925 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99907 * 179.97438 * 3 2 1 6 6 C 1.46494 * 120.00002 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.46803 * 35.00490 * 6 5 3 8 8 C 1.53000 * 109.47237 * 275.00253 * 6 5 3 9 9 C 1.50697 * 109.47250 * 154.99841 * 6 5 3 10 10 O 1.21287 * 119.99898 * 28.18658 * 9 6 5 11 11 N 1.34771 * 120.00576 * 208.18010 * 9 6 5 12 12 C 1.47081 * 125.62819 * 5.93454 * 11 9 6 13 13 C 1.54475 * 107.29145 * 178.91099 * 12 11 9 14 14 C 1.54367 * 102.94977 * 338.83671 * 13 12 11 15 15 C 1.47578 * 125.63486 * 186.23865 * 11 9 6 16 16 C 1.52363 * 110.39461 * 152.20081 * 14 13 12 17 17 N 1.47323 * 108.43595 * 73.53253 * 16 14 13 18 18 C 1.36934 * 121.08156 * 229.17140 * 17 16 14 19 19 H 1.08001 * 120.00014 * 152.93858 * 18 17 16 20 20 C 1.38814 * 120.00243 * 332.94330 * 18 17 16 21 21 N 1.31618 * 119.99476 * 346.27644 * 20 18 17 22 22 Si 1.86793 * 120.00323 * 166.27282 * 20 18 17 23 23 H 1.48500 * 109.47103 * 89.99814 * 22 20 18 24 24 H 1.48496 * 109.47344 * 210.00053 * 22 20 18 25 25 H 1.48504 * 109.47094 * 330.00058 * 22 20 18 26 26 C 1.47169 * 117.84215 * 49.15381 * 17 16 14 27 27 C 1.53286 * 108.54926 * 308.73714 * 26 17 16 28 28 O 1.41876 * 110.73097 * 276.13361 * 14 13 12 29 29 H 1.08996 * 109.47278 * 59.99835 * 1 2 3 30 30 H 1.09001 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47039 * 299.99941 * 1 2 3 32 32 H 1.08998 * 109.47039 * 240.00059 * 2 1 3 33 33 H 1.08996 * 109.47278 * 120.00165 * 2 1 3 34 34 H 0.97000 * 120.00189 * 0.02562 * 5 3 2 35 35 H 1.09001 * 109.47001 * 175.63020 * 8 6 5 36 36 H 1.08995 * 109.47054 * 55.63199 * 8 6 5 37 37 H 1.08996 * 109.47236 * 295.62794 * 8 6 5 38 38 H 1.09005 * 109.88081 * 298.46655 * 12 11 9 39 39 H 1.09000 * 109.88088 * 59.61648 * 12 11 9 40 40 H 1.09009 * 110.86189 * 220.38762 * 13 12 11 41 41 H 1.08997 * 110.68208 * 97.20549 * 13 12 11 42 42 H 1.09001 * 110.37118 * 322.11538 * 15 11 9 43 43 H 1.09001 * 110.37483 * 84.35049 * 15 11 9 44 44 H 1.08993 * 109.64341 * 193.22135 * 16 14 13 45 45 H 1.09000 * 109.64011 * 313.63943 * 16 14 13 46 46 H 0.97006 * 119.99911 * 180.02562 * 21 20 18 47 47 H 1.08994 * 109.62408 * 68.45371 * 26 17 16 48 48 H 1.09004 * 109.62625 * 188.83417 * 26 17 16 49 49 H 1.09003 * 109.50833 * 172.96515 * 27 26 17 50 50 H 1.08994 * 109.51199 * 293.11114 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0483 0.0000 7 1 3.1729 3.6717 0.5888 8 6 3.8979 3.5702 -1.4373 9 6 5.2269 3.0931 0.6011 10 8 5.9533 2.1248 0.5245 11 7 5.6551 4.2090 1.2238 12 6 4.8418 5.4038 1.4961 13 6 5.7410 6.4097 2.2484 14 6 6.8527 5.5111 2.8313 15 6 7.0190 4.4364 1.7394 16 6 8.1422 6.3046 3.0013 17 7 7.9827 7.2121 4.1509 18 6 8.3021 8.5401 4.0529 19 1 7.8077 9.2625 4.6855 20 6 9.2611 8.9578 3.1404 21 7 10.0515 8.0758 2.5663 22 14 9.4297 10.7716 2.7271 23 1 10.3987 11.4035 3.6582 24 1 9.9163 10.9183 1.3318 25 1 8.1081 11.4352 2.8627 26 6 7.4686 6.6452 5.4079 27 6 6.1820 5.8697 5.1030 28 8 6.4366 4.9279 4.0559 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9878 0.9299 0.0005 35 1 4.1866 4.6213 -1.4319 36 1 2.9155 3.4657 -1.8977 37 1 4.6287 2.9956 -2.0063 38 1 4.4983 5.8402 0.5581 39 1 3.9872 5.1367 2.1177 40 1 5.1869 6.9046 3.0461 41 1 6.1593 7.1427 1.5587 42 1 7.4204 3.5183 2.1685 43 1 7.6699 4.7988 0.9437 44 1 8.9711 5.6215 3.1860 45 1 8.3382 6.8829 2.0984 46 1 10.7220 8.3677 1.9289 47 1 8.2101 5.9703 5.8354 48 1 7.2563 7.4494 6.1124 49 1 5.8555 5.3400 5.9979 50 1 5.4044 6.5648 4.7864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700560283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:24 Heat of formation + Delta-G solvation = -109.222483 kcal Electronic energy + Delta-G solvation = -31130.471211 eV Core-core repulsion = 26964.658278 eV Total energy + Delta-G solvation = -4165.812933 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.87033 -40.96238 -39.97923 -37.62908 -36.26652 -36.11888 -33.86212 -33.27347 -33.05379 -31.44303 -30.93272 -29.12931 -27.64670 -26.14932 -25.32038 -24.61640 -23.63742 -22.90438 -21.33021 -20.72700 -20.20340 -18.92311 -18.87446 -17.85909 -17.59638 -17.33256 -16.80863 -16.60220 -16.43887 -16.13803 -15.85009 -15.76605 -15.34877 -15.16552 -14.96364 -14.69661 -14.53949 -14.33869 -14.08062 -13.75430 -13.67909 -13.53481 -13.32254 -13.09119 -13.06265 -12.81139 -12.75493 -12.67065 -12.61651 -12.46520 -12.23005 -12.15255 -12.00999 -11.90659 -11.83939 -11.17408 -11.10992 -10.94819 -10.76504 -10.48926 -10.26451 -9.79350 -8.70635 -7.88635 -5.36717 1.29605 1.47685 1.49854 1.56923 1.58550 1.65488 2.29056 2.48688 2.71278 3.19162 3.26944 3.45755 3.54870 3.76632 3.87731 3.94929 4.00723 4.01645 4.19141 4.23729 4.28137 4.29293 4.36651 4.46082 4.54867 4.56838 4.64162 4.67111 4.68398 4.75089 4.77160 4.90271 4.96796 5.02063 5.04329 5.07752 5.09203 5.10688 5.16530 5.25322 5.25869 5.40139 5.52979 5.62759 6.30656 6.33804 6.40431 6.45032 6.86816 7.08161 7.16750 7.75667 8.30980 9.17564 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020503 B = 0.002612 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.330441 B =10717.852079 C =11083.447884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.138 4.138 3 C 0.511 3.489 4 O -0.578 6.578 5 N -0.714 5.714 6 C 0.135 3.865 7 H 0.107 0.893 8 C -0.148 4.148 9 C 0.527 3.473 10 O -0.571 6.571 11 N -0.604 5.604 12 C 0.105 3.895 13 C -0.136 4.136 14 C 0.091 3.909 15 C 0.128 3.872 16 C 0.175 3.825 17 N -0.609 5.609 18 C -0.257 4.257 19 H 0.073 0.927 20 C -0.048 4.048 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.289 1.289 24 H -0.294 1.294 25 H -0.266 1.266 26 C 0.103 3.897 27 C 0.053 3.947 28 O -0.384 6.384 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.415 0.585 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.086 0.914 44 H -0.008 1.008 45 H 0.075 0.925 46 H 0.251 0.749 47 H 0.013 0.987 48 H 0.074 0.926 49 H 0.115 0.885 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.842 -12.239 -5.668 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.178 4.178 3 C 0.300 3.700 4 O -0.458 6.458 5 N -0.369 5.369 6 C 0.026 3.974 7 H 0.124 0.876 8 C -0.207 4.207 9 C 0.316 3.684 10 O -0.451 6.451 11 N -0.337 5.337 12 C -0.017 4.017 13 C -0.174 4.174 14 C 0.049 3.951 15 C 0.005 3.995 16 C 0.049 3.951 17 N -0.333 5.333 18 C -0.387 4.387 19 H 0.091 0.909 20 C -0.243 4.243 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.216 1.216 24 H -0.220 1.220 25 H -0.191 1.191 26 C -0.022 4.022 27 C -0.024 4.024 28 O -0.303 6.303 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.253 0.747 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.010 0.990 45 H 0.094 0.906 46 H 0.060 0.940 47 H 0.031 0.969 48 H 0.093 0.907 49 H 0.133 0.867 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.954 -12.300 -5.809 21.736 hybrid contribution 1.401 1.032 0.028 1.740 sum -15.553 -11.267 -5.781 20.057 Atomic orbital electron populations 1.21538 0.93079 1.02720 1.02048 1.21711 0.98372 0.91073 1.06629 1.21529 0.81066 0.93328 0.74087 1.90688 1.55965 1.47961 1.51166 1.45946 1.07900 1.07677 1.75330 1.20697 0.91202 0.86247 0.99240 0.87555 1.22013 1.03568 1.02375 0.92730 1.20594 0.89326 0.81048 0.77439 1.90672 1.58438 1.35259 1.60736 1.48513 1.12606 1.16208 1.56355 1.22284 0.93972 0.84239 1.01174 1.22926 0.96688 0.97275 1.00541 1.22421 0.95645 0.92507 0.84490 1.21943 0.84312 0.98419 0.94822 1.20865 0.90881 0.90771 0.92588 1.44300 1.76258 1.05893 1.06842 1.19487 1.15514 0.83517 1.20144 0.90883 1.25798 0.95646 1.01315 1.01573 1.70146 1.21632 1.34258 1.32297 0.85281 0.78067 0.80433 0.76686 1.21616 1.22000 1.19095 1.21782 0.94601 0.96722 0.89113 1.23156 0.96500 0.92359 0.90412 1.87648 1.87701 1.34268 1.20661 0.93136 0.89654 0.93510 0.86300 0.86915 0.74724 0.89840 0.90551 0.91632 0.88412 0.90076 0.89090 0.90156 0.91212 0.89598 0.98981 0.90635 0.93999 0.96945 0.90745 0.86727 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.20 71.98 0.66 -1.07 16 2 C -0.14 -1.62 6.42 29.85 0.19 -1.43 16 3 C 0.51 10.22 7.79 87.66 0.68 10.90 16 4 O -0.58 -15.77 15.64 -3.04 -0.05 -15.82 16 5 N -0.71 -14.24 5.06 -446.11 -2.26 -16.49 16 6 C 0.13 3.00 2.58 44.25 0.11 3.11 16 7 H 0.11 2.43 6.58 -2.39 -0.02 2.41 16 8 C -0.15 -2.79 9.47 71.98 0.68 -2.11 16 9 C 0.53 14.85 7.03 87.66 0.62 15.47 16 10 O -0.57 -19.31 16.31 -3.05 -0.05 -19.36 16 11 N -0.60 -17.41 3.33 -812.52 -2.71 -20.12 16 12 C 0.11 2.56 6.09 86.77 0.53 3.08 16 13 C -0.14 -4.16 5.87 31.56 0.19 -3.97 16 14 C 0.09 3.33 0.84 -10.16 -0.01 3.32 16 15 C 0.13 4.39 6.11 86.55 0.53 4.92 16 16 C 0.18 8.11 4.04 86.01 0.35 8.46 16 17 N -0.61 -29.00 2.98 -698.87 -2.08 -31.08 16 18 C -0.26 -13.24 9.67 84.03 0.81 -12.43 16 19 H 0.07 3.63 7.87 -2.91 -0.02 3.60 16 20 C -0.05 -2.54 5.02 84.86 0.43 -2.12 16 21 N -0.94 -53.16 11.03 21.65 0.24 -52.92 16 22 Si 0.97 42.69 29.58 68.60 2.03 44.72 16 23 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 26 C 0.10 4.08 6.71 86.35 0.58 4.66 16 27 C 0.05 1.70 6.78 72.08 0.49 2.19 16 28 O -0.38 -14.06 10.28 -148.95 -1.53 -15.59 16 29 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 32 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.42 7.53 7.82 -92.71 -0.73 6.81 16 35 H 0.08 1.40 7.97 -2.39 -0.02 1.38 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.10 1.87 7.97 -2.38 -0.02 1.85 16 39 H 0.08 1.81 7.94 -2.39 -0.02 1.79 16 40 H 0.09 2.72 6.09 -2.38 -0.01 2.71 16 41 H 0.08 2.60 7.82 -2.39 -0.02 2.58 16 42 H 0.07 2.60 8.00 -2.39 -0.02 2.58 16 43 H 0.09 2.94 8.00 -2.39 -0.02 2.92 16 44 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.08 3.84 5.95 -2.39 -0.01 3.82 16 46 H 0.25 13.86 8.31 -92.70 -0.77 13.09 16 47 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.07 2.73 7.96 -2.38 -0.02 2.71 16 49 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 50 H 0.06 1.82 6.23 -2.39 -0.01 1.80 16 Total: -1.00 -69.58 395.01 0.65 -68.94 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.22 Total: 24.73 kcal Atomic # 6 Polarization: 26.16 SS G_CDS: 6.84 Total: 33.00 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -6.81 Total: -120.61 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -1.63 Total: -50.77 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -69.58 0.65 -68.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700560283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.286 kcal (2) G-P(sol) polarization free energy of solvation -69.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds