Wall clock time and date at job start Tue Mar 31 2020 23:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87705 * 2 1 4 4 C 1.54319 * 109.88662 * 121.01683 * 2 1 3 5 5 C 1.55158 * 102.94298 * 141.60794 * 4 2 1 6 6 H 1.09002 * 111.00062 * 82.57845 * 5 4 2 7 7 N 1.46501 * 111.00250 * 206.42447 * 5 4 2 8 8 C 1.36936 * 119.99720 * 205.00384 * 7 5 4 9 9 H 1.07996 * 120.00312 * 359.97438 * 8 7 5 10 10 C 1.38821 * 119.99953 * 180.02562 * 8 7 5 11 11 N 1.31623 * 119.99647 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00150 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47443 * 89.99637 * 12 10 8 14 14 H 1.48496 * 109.47305 * 209.99878 * 12 10 8 15 15 H 1.48506 * 109.47016 * 329.99869 * 12 10 8 16 16 C 1.54904 * 101.58496 * 324.50135 * 5 4 2 17 17 N 1.47023 * 109.88230 * 238.98837 * 2 1 3 18 18 C 1.34779 * 125.65235 * 61.60280 * 17 2 1 19 19 O 1.21282 * 119.99391 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00233 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.47180 * 180.02562 * 20 18 17 22 22 C 1.50698 * 109.46982 * 180.02562 * 21 20 18 23 23 O 1.21278 * 120.00138 * 359.97438 * 22 21 20 24 24 N 1.34777 * 119.99564 * 180.02562 * 22 21 20 25 25 C 1.47151 * 120.98464 * 359.71398 * 24 22 21 26 26 C 1.53709 * 108.16165 * 129.43583 * 25 24 22 27 27 O 1.42957 * 109.15059 * 52.53605 * 26 25 24 28 28 C 1.42963 * 114.16979 * 297.29211 * 27 26 25 29 29 C 1.47160 * 120.97705 * 180.02562 * 24 22 21 30 30 H 1.09002 * 109.47153 * 299.29616 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.29807 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.29788 * 1 2 3 33 33 H 1.08995 * 110.72377 * 259.97450 * 4 2 1 34 34 H 1.09003 * 110.71729 * 23.06993 * 4 2 1 35 35 H 0.96994 * 120.00341 * 25.00353 * 7 5 4 36 36 H 0.97001 * 119.99778 * 180.02562 * 11 10 8 37 37 H 1.08994 * 110.36903 * 155.84534 * 16 5 4 38 38 H 1.09004 * 110.36365 * 278.17106 * 16 5 4 39 39 H 1.09008 * 109.47238 * 300.00310 * 20 18 17 40 40 H 1.09005 * 109.47018 * 60.00332 * 20 18 17 41 41 H 1.08999 * 109.46704 * 300.00043 * 21 20 18 42 42 H 1.08995 * 109.47110 * 59.99921 * 21 20 18 43 43 H 1.09005 * 109.67893 * 249.21439 * 25 24 22 44 44 H 1.08993 * 109.68086 * 9.76507 * 25 24 22 45 45 H 1.09003 * 109.65496 * 292.57550 * 26 25 24 46 46 H 1.08996 * 109.48669 * 172.39805 * 26 25 24 47 47 H 1.09005 * 109.51143 * 302.65577 * 28 27 26 48 48 H 1.08993 * 109.55996 * 182.52952 * 28 27 26 49 49 H 1.08997 * 109.68444 * 350.22729 * 29 24 22 50 50 H 1.08995 * 109.68012 * 110.78595 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 6 3.2876 -1.5133 0.6943 6 1 4.1655 -0.8679 0.6615 7 7 3.5532 -2.7175 1.4853 8 6 4.8165 -3.2443 1.5271 9 1 5.6169 -2.7723 0.9768 10 6 5.0681 -4.3857 2.2761 11 7 4.0924 -4.9612 2.9465 12 14 6.7912 -5.1047 2.3327 13 1 7.5434 -4.4995 3.4610 14 1 6.7080 -6.5748 2.5253 15 1 7.4920 -4.8115 1.0567 16 6 2.8146 -1.8804 -0.7343 17 7 2.0300 -0.7123 -1.1850 18 6 1.8074 -0.3585 -2.4663 19 8 1.1435 0.6250 -2.7171 20 6 2.3842 -1.1843 -3.5872 21 6 1.9860 -0.5697 -4.9306 22 6 2.5623 -1.3959 -6.0514 23 8 3.2266 -2.3790 -5.8005 24 7 2.3404 -1.0414 -7.3327 25 6 1.5335 0.1443 -7.6618 26 6 2.3286 1.0035 -8.6579 27 8 2.7366 0.1882 -9.7591 28 6 3.6172 -0.8799 -9.4020 29 6 2.8923 -1.8327 -8.4439 30 1 -0.3633 0.5029 0.8962 31 1 -0.3633 -1.0276 -0.0126 32 1 -0.3634 0.5247 -0.8836 33 1 2.3530 -0.0432 2.0201 34 1 1.3040 -1.4414 1.6220 35 1 2.8343 -3.1416 1.9792 36 1 4.2683 -5.7585 3.4702 37 1 3.6716 -2.0356 -1.3896 38 1 2.1887 -2.7724 -0.7091 39 1 3.4709 -1.2015 -3.5037 40 1 1.9988 -2.2020 -3.5243 41 1 0.8994 -0.5522 -5.0142 42 1 2.3717 0.4478 -4.9932 43 1 0.5906 -0.1668 -8.1118 44 1 1.3370 0.7176 -6.7559 45 1 3.2087 1.4164 -8.1650 46 1 1.6992 1.8162 -9.0203 47 1 4.5020 -0.4737 -8.9117 48 1 3.9149 -1.4227 -10.2990 49 1 3.5962 -2.5692 -8.0561 50 1 2.0838 -2.3390 -8.9711 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700853027.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:35 Heat of formation + Delta-G solvation = -99.927781 kcal Electronic energy + Delta-G solvation = -29900.842746 eV Core-core repulsion = 25735.432861 eV Total energy + Delta-G solvation = -4165.409885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.73242 -39.92388 -38.65868 -37.44620 -35.12636 -34.22867 -33.26441 -31.93860 -31.45356 -31.17366 -28.51727 -28.34350 -25.89669 -25.41083 -24.38347 -23.80432 -22.46959 -21.29487 -20.29245 -19.39885 -18.68716 -17.78487 -17.37187 -16.91435 -16.63039 -16.43793 -15.98683 -15.78437 -15.61434 -15.46504 -14.84636 -14.80029 -14.18964 -13.94564 -13.81167 -13.60179 -13.28954 -13.12578 -12.93066 -12.81248 -12.63099 -12.42145 -12.27151 -12.10616 -11.89820 -11.87642 -11.68811 -11.31932 -11.19333 -11.15958 -11.00498 -10.78153 -10.64964 -10.64049 -10.30104 -10.04650 -10.03993 -9.79365 -9.63551 -9.03953 -8.97532 -8.37201 -7.11597 -5.87025 -3.18026 2.34427 2.44863 2.79305 3.19996 3.33438 3.39208 3.45233 3.46370 4.13841 4.24390 4.48245 4.50251 4.57403 4.68760 4.71100 4.75246 4.81557 4.92329 5.02723 5.09987 5.13019 5.17619 5.23906 5.25279 5.32933 5.43242 5.46584 5.48855 5.56129 5.67911 5.71877 5.76101 5.81239 5.83143 6.01015 6.08800 6.13156 6.17612 6.32749 6.44304 6.48194 6.59274 6.63667 6.81942 6.94650 7.61893 7.78650 7.85185 8.29681 8.33635 9.42532 9.95627 10.30472 11.34882 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.002424 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.291234 B =11546.191823 C =13473.242711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.071 0.929 4 C -0.138 4.138 5 C 0.173 3.827 6 H 0.068 0.932 7 N -0.711 5.711 8 C -0.249 4.249 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.280 1.280 16 C 0.071 3.929 17 N -0.608 5.608 18 C 0.529 3.471 19 O -0.559 6.559 20 C -0.122 4.122 21 C -0.121 4.121 22 C 0.517 3.483 23 O -0.532 6.532 24 N -0.621 5.621 25 C 0.070 3.930 26 C 0.046 3.954 27 O -0.381 6.381 28 C 0.048 3.952 29 C 0.076 3.924 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.058 0.942 46 H 0.108 0.892 47 H 0.057 0.943 48 H 0.107 0.893 49 H 0.103 0.897 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.664 12.281 -21.197 25.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.089 0.911 4 C -0.177 4.177 5 C 0.060 3.940 6 H 0.086 0.914 7 N -0.351 5.351 8 C -0.380 4.380 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.577 5.577 12 Si 0.739 3.261 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.055 4.055 17 N -0.341 5.341 18 C 0.318 3.682 19 O -0.439 6.439 20 C -0.162 4.162 21 C -0.161 4.161 22 C 0.306 3.694 23 O -0.408 6.408 24 N -0.357 5.357 25 C -0.053 4.053 26 C -0.031 4.031 27 O -0.299 6.299 28 C -0.030 4.030 29 C -0.047 4.047 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.098 0.902 44 H 0.119 0.881 45 H 0.076 0.924 46 H 0.126 0.874 47 H 0.075 0.925 48 H 0.125 0.875 49 H 0.121 0.879 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.520 12.226 -21.416 25.508 hybrid contribution 0.716 -0.774 0.451 1.146 sum -5.804 11.452 -20.965 24.585 Atomic orbital electron populations 1.22125 0.95212 1.02150 1.02320 1.21503 0.94193 0.96068 0.84814 0.91105 1.23048 0.99211 0.99687 0.95742 1.21282 0.94675 0.89497 0.88535 0.91416 1.42317 1.09633 1.27886 1.55230 1.19256 0.86816 1.06982 1.24965 0.90922 1.24777 0.97692 0.98256 0.99759 1.69661 1.30826 1.22385 1.34795 0.86176 0.83849 0.78294 0.77773 1.21604 1.21692 1.20587 1.23610 0.94593 0.87453 0.99803 1.48714 1.51877 1.28958 1.04566 1.20183 0.80273 0.85052 0.82718 1.90635 1.41254 1.28289 1.83701 1.21348 1.03433 1.00437 0.91019 1.21385 1.03040 1.00003 0.91639 1.20851 0.79911 0.85346 0.83261 1.90738 1.39367 1.27454 1.83273 1.48162 1.53283 1.28573 1.05725 1.22590 0.94787 0.87099 1.00819 1.23077 0.98895 0.93043 0.88107 1.87968 1.66160 1.43206 1.32550 1.23012 0.92054 0.88503 0.99388 1.22298 0.99696 0.94908 0.87786 0.91959 0.92588 0.91657 0.90364 0.90409 0.77836 0.93317 0.91045 0.91142 0.88132 0.88150 0.88074 0.88116 0.90202 0.88085 0.92363 0.87426 0.92487 0.87520 0.87886 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.10 37.16 0.34 -1.80 16 2 C 0.14 2.00 3.45 -66.96 -0.23 1.77 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.14 -2.13 6.12 -24.90 -0.15 -2.28 16 5 C 0.17 3.19 3.71 -65.78 -0.24 2.95 16 6 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 7 N -0.71 -16.69 5.24 -51.35 -0.27 -16.96 16 8 C -0.25 -6.58 9.96 -15.06 -0.15 -6.73 16 9 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 10 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 11 N -0.93 -27.09 13.06 55.49 0.72 -26.37 16 12 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 16 C 0.07 1.20 6.41 -2.35 -0.02 1.18 16 17 N -0.61 -9.31 3.08 -162.76 -0.50 -9.81 16 18 C 0.53 7.85 7.64 -10.99 -0.08 7.77 16 19 O -0.56 -9.19 15.02 5.56 0.08 -9.10 16 20 C -0.12 -1.56 4.01 -27.88 -0.11 -1.67 16 21 C -0.12 -1.26 3.36 -27.88 -0.09 -1.35 16 22 C 0.52 5.99 7.71 -10.99 -0.08 5.90 16 23 O -0.53 -8.14 15.45 5.56 0.09 -8.05 16 24 N -0.62 -5.67 3.01 -171.99 -0.52 -6.19 16 25 C 0.07 0.45 6.57 -3.32 -0.02 0.42 16 26 C 0.05 0.28 7.00 37.53 0.26 0.54 16 27 O -0.38 -3.07 10.74 -35.23 -0.38 -3.44 16 28 C 0.05 0.33 6.99 37.33 0.26 0.59 16 29 C 0.08 0.62 6.64 -3.51 -0.02 0.60 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.94 6.89 -51.93 -0.36 0.58 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.23 7.72 -51.93 -0.40 0.83 16 35 H 0.39 9.68 7.77 -40.82 -0.32 9.36 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.07 1.19 7.50 -51.93 -0.39 0.80 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.10 1.31 7.82 -51.92 -0.41 0.90 16 40 H 0.10 1.32 8.10 -51.93 -0.42 0.90 16 41 H 0.10 0.98 7.96 -51.93 -0.41 0.56 16 42 H 0.10 0.95 7.62 -51.93 -0.40 0.56 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.54 6.05 -51.93 -0.31 0.22 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.10 0.96 7.08 -51.93 -0.37 0.60 16 50 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 398.95 15.07 6.01 6.01 Total: -1.00 -32.74 398.95 -8.63 -41.37 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -8.40 Total: 8.22 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -0.45 Total: 7.57 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.56 Total: -59.32 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.21 Total: -20.60 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.74 -8.63 -41.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700853027.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.561 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds