Wall clock time and date at job start Tue Mar 31 2020 23:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87705 * 2 1 4 4 C 1.54319 * 109.88662 * 121.01683 * 2 1 3 5 5 C 1.55158 * 102.94298 * 141.60794 * 4 2 1 6 6 H 1.09002 * 111.00062 * 82.57845 * 5 4 2 7 7 N 1.46501 * 111.00250 * 206.42447 * 5 4 2 8 8 C 1.36936 * 119.99720 * 205.00384 * 7 5 4 9 9 H 1.07996 * 120.00312 * 359.97438 * 8 7 5 10 10 C 1.38821 * 119.99953 * 180.02562 * 8 7 5 11 11 N 1.31623 * 119.99647 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00150 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47443 * 89.99637 * 12 10 8 14 14 H 1.48496 * 109.47305 * 209.99878 * 12 10 8 15 15 H 1.48506 * 109.47016 * 329.99869 * 12 10 8 16 16 C 1.54904 * 101.58496 * 324.50135 * 5 4 2 17 17 N 1.47023 * 109.88230 * 238.98837 * 2 1 3 18 18 C 1.34779 * 125.65235 * 61.60280 * 17 2 1 19 19 O 1.21282 * 119.99391 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00233 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.47180 * 180.02562 * 20 18 17 22 22 C 1.50698 * 109.46982 * 180.02562 * 21 20 18 23 23 O 1.21278 * 120.00138 * 359.97438 * 22 21 20 24 24 N 1.34777 * 119.99564 * 180.02562 * 22 21 20 25 25 C 1.47151 * 120.98464 * 359.71398 * 24 22 21 26 26 C 1.53709 * 108.16165 * 129.43583 * 25 24 22 27 27 O 1.42957 * 109.15059 * 52.53605 * 26 25 24 28 28 C 1.42963 * 114.16979 * 297.29211 * 27 26 25 29 29 C 1.47160 * 120.97705 * 180.02562 * 24 22 21 30 30 H 1.09002 * 109.47153 * 299.29616 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.29807 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.29788 * 1 2 3 33 33 H 1.08995 * 110.72377 * 259.97450 * 4 2 1 34 34 H 1.09003 * 110.71729 * 23.06993 * 4 2 1 35 35 H 0.96994 * 120.00341 * 25.00353 * 7 5 4 36 36 H 0.97001 * 119.99778 * 180.02562 * 11 10 8 37 37 H 1.08994 * 110.36903 * 155.84534 * 16 5 4 38 38 H 1.09004 * 110.36365 * 278.17106 * 16 5 4 39 39 H 1.09008 * 109.47238 * 300.00310 * 20 18 17 40 40 H 1.09005 * 109.47018 * 60.00332 * 20 18 17 41 41 H 1.08999 * 109.46704 * 300.00043 * 21 20 18 42 42 H 1.08995 * 109.47110 * 59.99921 * 21 20 18 43 43 H 1.09005 * 109.67893 * 249.21439 * 25 24 22 44 44 H 1.08993 * 109.68086 * 9.76507 * 25 24 22 45 45 H 1.09003 * 109.65496 * 292.57550 * 26 25 24 46 46 H 1.08996 * 109.48669 * 172.39805 * 26 25 24 47 47 H 1.09005 * 109.51143 * 302.65577 * 28 27 26 48 48 H 1.08993 * 109.55996 * 182.52952 * 28 27 26 49 49 H 1.08997 * 109.68444 * 350.22729 * 29 24 22 50 50 H 1.08995 * 109.68012 * 110.78595 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 6 3.2876 -1.5133 0.6943 6 1 4.1655 -0.8679 0.6615 7 7 3.5532 -2.7175 1.4853 8 6 4.8165 -3.2443 1.5271 9 1 5.6169 -2.7723 0.9768 10 6 5.0681 -4.3857 2.2761 11 7 4.0924 -4.9612 2.9465 12 14 6.7912 -5.1047 2.3327 13 1 7.5434 -4.4995 3.4610 14 1 6.7080 -6.5748 2.5253 15 1 7.4920 -4.8115 1.0567 16 6 2.8146 -1.8804 -0.7343 17 7 2.0300 -0.7123 -1.1850 18 6 1.8074 -0.3585 -2.4663 19 8 1.1435 0.6250 -2.7171 20 6 2.3842 -1.1843 -3.5872 21 6 1.9860 -0.5697 -4.9306 22 6 2.5623 -1.3959 -6.0514 23 8 3.2266 -2.3790 -5.8005 24 7 2.3404 -1.0414 -7.3327 25 6 1.5335 0.1443 -7.6618 26 6 2.3286 1.0035 -8.6579 27 8 2.7366 0.1882 -9.7591 28 6 3.6172 -0.8799 -9.4020 29 6 2.8923 -1.8327 -8.4439 30 1 -0.3633 0.5029 0.8962 31 1 -0.3633 -1.0276 -0.0126 32 1 -0.3634 0.5247 -0.8836 33 1 2.3530 -0.0432 2.0201 34 1 1.3040 -1.4414 1.6220 35 1 2.8343 -3.1416 1.9792 36 1 4.2683 -5.7585 3.4702 37 1 3.6716 -2.0356 -1.3896 38 1 2.1887 -2.7724 -0.7091 39 1 3.4709 -1.2015 -3.5037 40 1 1.9988 -2.2020 -3.5243 41 1 0.8994 -0.5522 -5.0142 42 1 2.3717 0.4478 -4.9932 43 1 0.5906 -0.1668 -8.1118 44 1 1.3370 0.7176 -6.7559 45 1 3.2087 1.4164 -8.1650 46 1 1.6992 1.8162 -9.0203 47 1 4.5020 -0.4737 -8.9117 48 1 3.9149 -1.4227 -10.2990 49 1 3.5962 -2.5692 -8.0561 50 1 2.0838 -2.3390 -8.9711 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700853027.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:34 Heat of formation + Delta-G solvation = -121.868748 kcal Electronic energy + Delta-G solvation = -29901.794178 eV Core-core repulsion = 25735.432861 eV Total energy + Delta-G solvation = -4166.361317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59537 -41.06544 -39.42731 -38.75332 -35.99646 -35.86827 -34.26002 -33.27325 -32.75277 -32.10681 -30.08315 -29.12436 -26.87987 -26.61897 -25.73090 -24.94917 -23.29606 -22.42026 -21.73190 -20.17495 -19.86739 -19.28496 -18.69579 -17.89706 -17.52349 -17.32943 -17.01058 -16.74509 -16.47956 -16.36003 -16.04313 -15.73665 -15.57585 -15.34701 -14.91264 -14.75322 -14.69674 -14.20115 -14.13321 -13.93713 -13.59157 -13.54224 -13.40074 -13.12707 -13.02729 -12.86313 -12.79201 -12.68476 -12.38640 -12.35411 -12.27376 -12.08990 -12.01185 -11.78492 -11.73787 -11.48335 -11.27262 -11.03592 -10.92607 -10.81048 -9.68399 -9.66568 -9.05770 -7.95525 -5.25195 1.46487 1.49744 1.50409 1.58257 1.58640 1.67913 2.04978 2.56519 2.84418 3.23428 3.36248 3.56036 3.69004 3.77148 3.83732 3.94589 3.97000 3.99717 4.02753 4.08315 4.17814 4.19910 4.25756 4.30841 4.42894 4.47555 4.52108 4.56608 4.63653 4.72340 4.74108 4.74660 4.79775 4.83266 4.86303 4.88680 4.91334 5.08651 5.14496 5.24550 5.32865 5.38531 5.42600 5.54169 6.07763 6.18635 6.25822 6.53147 6.99414 7.11115 7.33601 8.04979 8.28926 9.27255 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.002424 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.291234 B =11546.191823 C =13473.242711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 H 0.079 0.921 4 C -0.126 4.126 5 C 0.165 3.835 6 H 0.067 0.933 7 N -0.722 5.722 8 C -0.243 4.243 9 H 0.079 0.921 10 C -0.070 4.070 11 N -0.966 5.966 12 Si 0.969 3.031 13 H -0.287 1.287 14 H -0.298 1.298 15 H -0.270 1.270 16 C 0.086 3.914 17 N -0.610 5.610 18 C 0.531 3.469 19 O -0.570 6.570 20 C -0.118 4.118 21 C -0.111 4.111 22 C 0.515 3.485 23 O -0.579 6.579 24 N -0.619 5.619 25 C 0.067 3.933 26 C 0.044 3.956 27 O -0.395 6.395 28 C 0.053 3.947 29 C 0.072 3.928 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.377 0.623 36 H 0.251 0.749 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.114 0.886 45 H 0.057 0.943 46 H 0.131 0.869 47 H 0.053 0.947 48 H 0.126 0.874 49 H 0.087 0.913 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.004 14.125 -22.572 27.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.034 3.966 3 H 0.097 0.903 4 C -0.165 4.165 5 C 0.054 3.946 6 H 0.085 0.915 7 N -0.361 5.361 8 C -0.375 4.375 9 H 0.097 0.903 10 C -0.263 4.263 11 N -0.616 5.616 12 Si 0.798 3.202 13 H -0.214 1.214 14 H -0.225 1.225 15 H -0.195 1.195 16 C -0.040 4.040 17 N -0.343 5.343 18 C 0.321 3.679 19 O -0.450 6.450 20 C -0.158 4.158 21 C -0.151 4.151 22 C 0.305 3.695 23 O -0.458 6.458 24 N -0.353 5.353 25 C -0.055 4.055 26 C -0.033 4.033 27 O -0.313 6.313 28 C -0.025 4.025 29 C -0.050 4.050 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.210 0.790 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.109 0.891 44 H 0.132 0.868 45 H 0.076 0.924 46 H 0.149 0.851 47 H 0.071 0.929 48 H 0.143 0.857 49 H 0.105 0.895 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.878 14.150 -22.858 27.749 hybrid contribution 0.762 -1.234 0.796 1.654 sum -6.116 12.916 -22.062 26.286 Atomic orbital electron populations 1.22052 0.94061 1.01912 1.02970 1.21580 0.95061 0.96060 0.83888 0.90321 1.22947 0.97507 0.99490 0.96514 1.21451 0.96105 0.88054 0.88975 0.91504 1.42429 1.08469 1.29233 1.56004 1.19620 0.88014 1.06414 1.23421 0.90348 1.25512 1.00958 0.99277 1.00509 1.69801 1.32574 1.22902 1.36319 0.85215 0.80101 0.76901 0.77989 1.21412 1.22486 1.19500 1.23199 0.94531 0.87563 0.98669 1.48725 1.51858 1.28500 1.05195 1.20447 0.79828 0.84892 0.82720 1.90628 1.41783 1.28855 1.83772 1.21302 1.02984 0.99905 0.91590 1.21330 1.03687 1.00165 0.89919 1.21009 0.79416 0.84811 0.84231 1.90719 1.41617 1.29443 1.84059 1.48276 1.52740 1.29118 1.05160 1.22826 0.94812 0.86202 1.01687 1.23245 0.99230 0.93203 0.87638 1.87954 1.66300 1.43472 1.33584 1.23031 0.91481 0.88183 0.99767 1.22379 0.99824 0.95082 0.87723 0.89859 0.93206 0.92460 0.88992 0.90732 0.79006 0.93990 0.91046 0.92378 0.88542 0.88819 0.86854 0.86669 0.89125 0.86791 0.92438 0.85094 0.92909 0.85658 0.89474 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.10 71.98 0.65 -3.11 16 2 C 0.14 3.74 3.45 45.34 0.16 3.89 16 3 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.13 -3.71 6.12 31.78 0.19 -3.51 16 5 C 0.16 5.98 3.71 46.38 0.17 6.16 16 6 H 0.07 2.45 8.09 -2.39 -0.02 2.43 16 7 N -0.72 -34.00 5.24 -316.37 -1.66 -35.66 16 8 C -0.24 -12.80 9.96 84.04 0.84 -11.96 16 9 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 10 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 11 N -0.97 -57.26 13.06 21.65 0.28 -56.98 16 12 Si 0.97 45.02 29.55 68.60 2.03 47.05 16 13 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 C 0.09 2.87 6.41 86.79 0.56 3.42 16 17 N -0.61 -17.93 3.08 -787.25 -2.42 -20.35 16 18 C 0.53 15.04 7.64 87.66 0.67 15.71 16 19 O -0.57 -17.58 15.02 -3.04 -0.05 -17.62 16 20 C -0.12 -2.91 4.01 29.85 0.12 -2.79 16 21 C -0.11 -2.16 3.36 29.85 0.10 -2.06 16 22 C 0.52 11.61 7.71 87.66 0.68 12.29 16 23 O -0.58 -17.95 15.45 -3.02 -0.05 -18.00 16 24 N -0.62 -10.56 3.01 -816.45 -2.46 -13.02 16 25 C 0.07 0.70 6.57 86.49 0.57 1.26 16 26 C 0.04 0.42 7.00 72.22 0.51 0.93 16 27 O -0.39 -5.59 10.74 -148.98 -1.60 -7.19 16 28 C 0.05 0.66 6.99 72.10 0.50 1.16 16 29 C 0.07 1.14 6.64 86.37 0.57 1.71 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.53 6.89 -2.38 -0.02 1.51 16 33 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 2.27 7.72 -2.39 -0.02 2.26 16 35 H 0.38 19.13 7.77 -92.71 -0.72 18.41 16 36 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 37 H 0.07 2.36 7.50 -2.39 -0.02 2.34 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.10 2.48 7.82 -2.38 -0.02 2.46 16 40 H 0.09 2.46 8.10 -2.38 -0.02 2.44 16 41 H 0.11 1.95 7.96 -2.39 -0.02 1.93 16 42 H 0.12 1.92 7.62 -2.39 -0.02 1.90 16 43 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.11 0.90 6.05 -2.39 -0.01 0.88 16 45 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.05 0.70 8.14 -2.38 -0.02 0.69 16 48 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.09 1.67 7.08 -2.39 -0.02 1.65 16 50 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -69.89 398.95 1.05 -68.84 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.21 Total: 33.24 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 6.75 Total: 19.69 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -6.26 Total: -126.01 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -1.69 Total: -42.81 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -69.89 1.05 -68.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700853027.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.029 kcal (2) G-P(sol) polarization free energy of solvation -69.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds