Wall clock time and date at job start Tue Mar 31 2020 23:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.99961 * 2 1 4 4 C 1.54319 * 109.88522 * 121.09379 * 2 1 3 5 5 C 1.55161 * 102.94308 * 97.22278 * 4 2 1 6 6 H 1.08995 * 111.00756 * 277.39549 * 5 4 2 7 7 N 1.46498 * 111.00437 * 153.57739 * 5 4 2 8 8 C 1.36943 * 119.99752 * 154.72557 * 7 5 4 9 9 H 1.08002 * 119.99793 * 0.27665 * 8 7 5 10 10 C 1.38811 * 120.00012 * 180.27737 * 8 7 5 11 11 N 1.31611 * 120.00081 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99814 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47483 * 90.00178 * 12 10 8 14 14 H 1.48498 * 109.47011 * 210.00042 * 12 10 8 15 15 H 1.48502 * 109.47495 * 329.99664 * 12 10 8 16 16 C 1.54912 * 101.57893 * 35.50535 * 5 4 2 17 17 N 1.47028 * 109.88581 * 238.90370 * 2 1 3 18 18 C 1.34776 * 125.64470 * 59.56944 * 17 2 1 19 19 O 1.21280 * 120.00355 * 0.02562 * 18 17 2 20 20 C 1.50705 * 119.99674 * 180.02562 * 18 17 2 21 21 C 1.53003 * 109.47135 * 179.97438 * 20 18 17 22 22 C 1.50692 * 109.46919 * 179.97438 * 21 20 18 23 23 O 1.21281 * 120.00588 * 359.97438 * 22 21 20 24 24 N 1.34782 * 119.99703 * 180.02562 * 22 21 20 25 25 C 1.47156 * 120.98142 * 359.71239 * 24 22 21 26 26 C 1.53711 * 108.15778 * 129.43807 * 25 24 22 27 27 O 1.42957 * 109.14991 * 52.53940 * 26 25 24 28 28 C 1.42966 * 114.16768 * 297.28653 * 27 26 25 29 29 C 1.47152 * 120.98056 * 180.02562 * 24 22 21 30 30 H 1.08994 * 109.47430 * 298.90629 * 1 2 3 31 31 H 1.09008 * 109.46929 * 58.90627 * 1 2 3 32 32 H 1.09001 * 109.47546 * 178.90027 * 1 2 3 33 33 H 1.09005 * 110.71664 * 338.86338 * 4 2 1 34 34 H 1.08996 * 110.72945 * 215.58852 * 4 2 1 35 35 H 0.97001 * 120.00384 * 335.00912 * 7 5 4 36 36 H 0.97008 * 120.00329 * 179.97438 * 11 10 8 37 37 H 1.09002 * 110.36198 * 81.82704 * 16 5 4 38 38 H 1.08996 * 110.36609 * 204.14806 * 16 5 4 39 39 H 1.09000 * 109.46677 * 299.99514 * 20 18 17 40 40 H 1.08996 * 109.47274 * 59.99513 * 20 18 17 41 41 H 1.08999 * 109.46465 * 299.99944 * 21 20 18 42 42 H 1.09003 * 109.47049 * 59.99723 * 21 20 18 43 43 H 1.09000 * 109.67908 * 249.21459 * 25 24 22 44 44 H 1.09001 * 109.68150 * 9.76785 * 25 24 22 45 45 H 1.09006 * 109.65671 * 292.56774 * 26 25 24 46 46 H 1.09001 * 109.48384 * 172.40171 * 26 25 24 47 47 H 1.09007 * 109.50991 * 302.66115 * 28 27 26 48 48 H 1.08994 * 109.55849 * 182.53199 * 28 27 26 49 49 H 1.09000 * 109.68435 * 350.22807 * 29 24 22 50 50 H 1.09004 * 109.68581 * 110.74910 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 1.2427 5 6 2.3518 -2.1695 0.6924 6 1 1.4453 -2.7738 0.6610 7 7 3.3937 -2.8312 1.4816 8 6 3.4533 -4.1985 1.5274 9 1 2.7350 -4.7890 0.9780 10 6 4.4370 -4.8256 2.2798 11 7 4.4946 -6.1397 2.3234 12 14 5.6788 -3.8042 3.2305 13 1 5.1571 -3.5339 4.5944 14 1 6.9600 -4.5484 3.3292 15 1 5.9067 -2.5181 2.5239 16 6 2.8568 -1.8498 -0.7368 17 7 2.0301 -0.7141 -1.1839 18 6 1.7756 -0.3843 -2.4657 19 8 1.0796 0.5763 -2.7181 20 6 2.3559 -1.2094 -3.5854 21 6 1.9165 -0.6256 -4.9297 22 6 2.4973 -1.4502 -6.0493 23 8 3.1944 -2.4101 -5.7970 24 7 2.2429 -1.1204 -7.3312 25 6 1.3959 0.0366 -7.6619 26 6 2.1481 0.9045 -8.6835 27 8 2.5605 0.0860 -9.7807 28 6 3.4782 -0.9509 -9.4248 29 6 2.7984 -1.9108 -8.4412 30 1 -0.3634 0.4967 0.8996 31 1 -0.3633 0.5308 -0.8801 32 1 -0.3634 -1.0275 -0.0197 33 1 1.2917 -0.7889 2.0200 34 1 2.9656 -0.2832 1.6183 35 1 4.0387 -2.3008 1.9751 36 1 5.1822 -6.5779 2.8489 37 1 3.9091 -1.5667 -0.7127 38 1 2.7088 -2.7080 -1.3922 39 1 3.4439 -1.1952 -3.5209 40 1 2.0003 -2.2363 -3.5020 41 1 0.8285 -0.6400 -4.9938 42 1 2.2718 0.4015 -5.0133 43 1 0.4550 -0.3080 -8.0908 44 1 1.1984 0.6166 -6.7604 45 1 3.0241 1.3498 -8.2119 46 1 1.4889 1.6935 -9.0455 47 1 4.3591 -0.5123 -8.9559 48 1 3.7761 -1.4974 -10.3196 49 1 3.5302 -2.6209 -8.0561 50 1 1.9961 -2.4483 -8.9467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700853028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:38 Heat of formation + Delta-G solvation = -95.107522 kcal Electronic energy + Delta-G solvation = -29967.695193 eV Core-core repulsion = 25802.494330 eV Total energy + Delta-G solvation = -4165.200863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.74675 -40.02600 -38.67604 -37.57299 -35.13052 -34.36579 -33.30021 -31.98851 -31.58249 -31.23738 -28.86873 -28.42328 -25.93470 -25.55595 -24.39866 -23.60674 -22.46643 -21.44053 -20.28558 -19.39660 -18.82492 -17.89229 -17.72047 -16.92191 -16.63270 -16.43931 -15.99660 -15.82732 -15.50594 -15.37355 -15.26225 -14.70853 -14.24521 -13.98965 -13.78031 -13.70710 -13.38525 -13.09892 -12.95554 -12.87900 -12.74631 -12.52380 -12.44295 -12.02587 -11.95585 -11.88204 -11.84850 -11.55418 -11.32643 -11.19690 -11.11790 -10.85176 -10.68399 -10.64819 -10.39507 -10.08377 -10.04684 -9.72311 -9.66112 -9.07352 -8.97840 -8.45521 -7.42545 -5.86356 -3.24845 2.33887 2.44032 2.73586 3.13384 3.31290 3.32880 3.33834 3.40325 4.12017 4.23827 4.47475 4.50264 4.56157 4.61887 4.68997 4.71850 4.78623 4.90096 4.99967 5.02194 5.08630 5.12371 5.13982 5.24659 5.28632 5.32389 5.41683 5.46551 5.49787 5.51859 5.67182 5.73527 5.75417 5.80312 5.85459 6.00104 6.02883 6.10020 6.14611 6.32829 6.41987 6.54664 6.58801 6.70225 6.94199 7.70728 7.84382 7.87553 8.26803 8.32095 9.08346 9.80367 9.98068 11.31208 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014080 B = 0.002376 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.174394 B =11781.254700 C =13264.374020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.070 0.930 4 C -0.142 4.142 5 C 0.179 3.821 6 H 0.077 0.923 7 N -0.736 5.736 8 C -0.254 4.254 9 H 0.093 0.907 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.884 3.116 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.071 3.929 17 N -0.608 5.608 18 C 0.530 3.470 19 O -0.557 6.557 20 C -0.123 4.123 21 C -0.121 4.121 22 C 0.517 3.483 23 O -0.532 6.532 24 N -0.621 5.621 25 C 0.070 3.930 26 C 0.046 3.954 27 O -0.381 6.381 28 C 0.048 3.952 29 C 0.076 3.924 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.364 0.636 36 H 0.261 0.739 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.058 0.942 46 H 0.108 0.892 47 H 0.057 0.943 48 H 0.107 0.893 49 H 0.103 0.897 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 15.970 -20.023 26.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.088 0.912 4 C -0.181 4.181 5 C 0.067 3.933 6 H 0.095 0.905 7 N -0.377 5.377 8 C -0.384 4.384 9 H 0.110 0.890 10 C -0.187 4.187 11 N -0.575 5.575 12 Si 0.714 3.286 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.055 4.055 17 N -0.342 5.342 18 C 0.319 3.681 19 O -0.436 6.436 20 C -0.163 4.163 21 C -0.161 4.161 22 C 0.306 3.694 23 O -0.408 6.408 24 N -0.357 5.357 25 C -0.053 4.053 26 C -0.031 4.031 27 O -0.299 6.299 28 C -0.029 4.029 29 C -0.047 4.047 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.198 0.802 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.098 0.902 44 H 0.119 0.881 45 H 0.076 0.924 46 H 0.126 0.874 47 H 0.075 0.925 48 H 0.125 0.875 49 H 0.121 0.879 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.553 15.701 -20.262 26.458 hybrid contribution 1.131 0.494 0.943 1.553 sum -5.422 16.195 -19.319 25.786 Atomic orbital electron populations 1.22130 0.94881 1.02441 1.02429 1.21478 0.94521 0.95835 0.84636 0.91242 1.23078 1.01703 0.97140 0.96222 1.21246 0.92637 0.91138 0.88258 0.90526 1.42669 1.33875 1.04462 1.56669 1.19075 1.12937 0.80497 1.25865 0.88965 1.24687 0.98779 0.95312 0.99893 1.69696 1.36206 1.06937 1.44635 0.86567 0.81821 0.79707 0.80484 1.20950 1.21628 1.20253 1.23475 0.94835 0.87438 0.99747 1.48614 1.50183 1.30747 1.04630 1.20203 0.80468 0.84784 0.82658 1.90636 1.39859 1.29517 1.83628 1.21357 1.03242 1.00691 0.91000 1.21383 1.02946 1.00097 0.91639 1.20841 0.80268 0.85041 0.83254 1.90745 1.38150 1.28635 1.83220 1.48160 1.51408 1.30444 1.05726 1.22591 0.94260 0.87793 1.00650 1.23076 0.99103 0.92890 0.88050 1.87970 1.63837 1.45106 1.32963 1.23013 0.91582 0.89103 0.99250 1.22299 0.99920 0.94796 0.87683 0.91975 0.91427 0.92322 0.89852 0.90859 0.80234 0.92866 0.91267 0.90553 0.88168 0.87956 0.88017 0.88171 0.90179 0.88112 0.92398 0.87436 0.92510 0.87502 0.87866 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.05 37.15 0.34 -1.71 16 2 C 0.14 1.90 3.49 -66.95 -0.23 1.67 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.14 -2.04 6.14 -24.90 -0.15 -2.19 16 5 C 0.18 3.15 3.72 -65.78 -0.24 2.91 16 6 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 7 N -0.74 -16.14 5.05 -51.35 -0.26 -16.40 16 8 C -0.25 -6.79 10.44 -15.06 -0.16 -6.95 16 9 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 10 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 11 N -0.93 -28.32 13.97 55.49 0.78 -27.55 16 12 Si 0.88 21.24 27.74 -169.99 -4.71 16.52 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 16 C 0.07 1.14 6.38 -2.53 -0.02 1.12 16 17 N -0.61 -8.92 3.08 -163.02 -0.50 -9.42 16 18 C 0.53 7.60 7.63 -10.98 -0.08 7.51 16 19 O -0.56 -8.86 14.89 5.56 0.08 -8.77 16 20 C -0.12 -1.52 3.99 -27.88 -0.11 -1.63 16 21 C -0.12 -1.23 3.36 -27.89 -0.09 -1.33 16 22 C 0.52 5.93 7.71 -10.99 -0.08 5.84 16 23 O -0.53 -8.10 15.45 5.56 0.09 -8.02 16 24 N -0.62 -5.62 3.01 -171.99 -0.52 -6.14 16 25 C 0.07 0.44 6.57 -3.31 -0.02 0.42 16 26 C 0.05 0.27 7.00 37.53 0.26 0.54 16 27 O -0.38 -3.04 10.74 -35.23 -0.38 -3.42 16 28 C 0.05 0.33 6.99 37.33 0.26 0.59 16 29 C 0.08 0.62 6.64 -3.51 -0.02 0.60 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.94 6.77 -51.92 -0.35 0.58 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.10 7.83 -51.93 -0.41 0.70 16 34 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 35 H 0.36 7.85 5.62 -40.82 -0.23 7.63 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.25 7.48 -51.93 -0.39 0.86 16 39 H 0.10 1.27 8.10 -51.93 -0.42 0.85 16 40 H 0.10 1.32 7.81 -51.93 -0.41 0.92 16 41 H 0.10 0.96 7.96 -51.93 -0.41 0.55 16 42 H 0.10 0.92 7.63 -51.93 -0.40 0.52 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.52 6.05 -51.93 -0.31 0.21 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.10 0.97 7.08 -51.93 -0.37 0.60 16 50 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 395.49 15.07 5.96 5.96 Total: -1.00 -33.79 395.49 -8.28 -42.07 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -8.35 Total: 7.59 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -0.46 Total: 7.58 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.50 Total: -59.51 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.21 Total: -20.21 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.71 Total: 16.52 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.79 -8.28 -42.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700853028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.038 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds