Wall clock time and date at job start Tue Mar 31 2020 23:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.99961 * 2 1 4 4 C 1.54319 * 109.88522 * 121.09379 * 2 1 3 5 5 C 1.55161 * 102.94308 * 97.22278 * 4 2 1 6 6 H 1.08995 * 111.00756 * 277.39549 * 5 4 2 7 7 N 1.46498 * 111.00437 * 153.57739 * 5 4 2 8 8 C 1.36943 * 119.99752 * 154.72557 * 7 5 4 9 9 H 1.08002 * 119.99793 * 0.27665 * 8 7 5 10 10 C 1.38811 * 120.00012 * 180.27737 * 8 7 5 11 11 N 1.31611 * 120.00081 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99814 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47483 * 90.00178 * 12 10 8 14 14 H 1.48498 * 109.47011 * 210.00042 * 12 10 8 15 15 H 1.48502 * 109.47495 * 329.99664 * 12 10 8 16 16 C 1.54912 * 101.57893 * 35.50535 * 5 4 2 17 17 N 1.47028 * 109.88581 * 238.90370 * 2 1 3 18 18 C 1.34776 * 125.64470 * 59.56944 * 17 2 1 19 19 O 1.21280 * 120.00355 * 0.02562 * 18 17 2 20 20 C 1.50705 * 119.99674 * 180.02562 * 18 17 2 21 21 C 1.53003 * 109.47135 * 179.97438 * 20 18 17 22 22 C 1.50692 * 109.46919 * 179.97438 * 21 20 18 23 23 O 1.21281 * 120.00588 * 359.97438 * 22 21 20 24 24 N 1.34782 * 119.99703 * 180.02562 * 22 21 20 25 25 C 1.47156 * 120.98142 * 359.71239 * 24 22 21 26 26 C 1.53711 * 108.15778 * 129.43807 * 25 24 22 27 27 O 1.42957 * 109.14991 * 52.53940 * 26 25 24 28 28 C 1.42966 * 114.16768 * 297.28653 * 27 26 25 29 29 C 1.47152 * 120.98056 * 180.02562 * 24 22 21 30 30 H 1.08994 * 109.47430 * 298.90629 * 1 2 3 31 31 H 1.09008 * 109.46929 * 58.90627 * 1 2 3 32 32 H 1.09001 * 109.47546 * 178.90027 * 1 2 3 33 33 H 1.09005 * 110.71664 * 338.86338 * 4 2 1 34 34 H 1.08996 * 110.72945 * 215.58852 * 4 2 1 35 35 H 0.97001 * 120.00384 * 335.00912 * 7 5 4 36 36 H 0.97008 * 120.00329 * 179.97438 * 11 10 8 37 37 H 1.09002 * 110.36198 * 81.82704 * 16 5 4 38 38 H 1.08996 * 110.36609 * 204.14806 * 16 5 4 39 39 H 1.09000 * 109.46677 * 299.99514 * 20 18 17 40 40 H 1.08996 * 109.47274 * 59.99513 * 20 18 17 41 41 H 1.08999 * 109.46465 * 299.99944 * 21 20 18 42 42 H 1.09003 * 109.47049 * 59.99723 * 21 20 18 43 43 H 1.09000 * 109.67908 * 249.21459 * 25 24 22 44 44 H 1.09001 * 109.68150 * 9.76785 * 25 24 22 45 45 H 1.09006 * 109.65671 * 292.56774 * 26 25 24 46 46 H 1.09001 * 109.48384 * 172.40171 * 26 25 24 47 47 H 1.09007 * 109.50991 * 302.66115 * 28 27 26 48 48 H 1.08994 * 109.55849 * 182.53199 * 28 27 26 49 49 H 1.09000 * 109.68435 * 350.22807 * 29 24 22 50 50 H 1.09004 * 109.68581 * 110.74910 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 1.2427 5 6 2.3518 -2.1695 0.6924 6 1 1.4453 -2.7738 0.6610 7 7 3.3937 -2.8312 1.4816 8 6 3.4533 -4.1985 1.5274 9 1 2.7350 -4.7890 0.9780 10 6 4.4370 -4.8256 2.2798 11 7 4.4946 -6.1397 2.3234 12 14 5.6788 -3.8042 3.2305 13 1 5.1571 -3.5339 4.5944 14 1 6.9600 -4.5484 3.3292 15 1 5.9067 -2.5181 2.5239 16 6 2.8568 -1.8498 -0.7368 17 7 2.0301 -0.7141 -1.1839 18 6 1.7756 -0.3843 -2.4657 19 8 1.0796 0.5763 -2.7181 20 6 2.3559 -1.2094 -3.5854 21 6 1.9165 -0.6256 -4.9297 22 6 2.4973 -1.4502 -6.0493 23 8 3.1944 -2.4101 -5.7970 24 7 2.2429 -1.1204 -7.3312 25 6 1.3959 0.0366 -7.6619 26 6 2.1481 0.9045 -8.6835 27 8 2.5605 0.0860 -9.7807 28 6 3.4782 -0.9509 -9.4248 29 6 2.7984 -1.9108 -8.4412 30 1 -0.3634 0.4967 0.8996 31 1 -0.3633 0.5308 -0.8801 32 1 -0.3634 -1.0275 -0.0197 33 1 1.2917 -0.7889 2.0200 34 1 2.9656 -0.2832 1.6183 35 1 4.0387 -2.3008 1.9751 36 1 5.1822 -6.5779 2.8489 37 1 3.9091 -1.5667 -0.7127 38 1 2.7088 -2.7080 -1.3922 39 1 3.4439 -1.1952 -3.5209 40 1 2.0003 -2.2363 -3.5020 41 1 0.8285 -0.6400 -4.9938 42 1 2.2718 0.4015 -5.0133 43 1 0.4550 -0.3080 -8.0908 44 1 1.1984 0.6166 -6.7604 45 1 3.0241 1.3498 -8.2119 46 1 1.4889 1.6935 -9.0455 47 1 4.3591 -0.5123 -8.9559 48 1 3.7761 -1.4974 -10.3196 49 1 3.5302 -2.6209 -8.0561 50 1 1.9961 -2.4483 -8.9467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700853028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:37 Heat of formation + Delta-G solvation = -118.664124 kcal Electronic energy + Delta-G solvation = -29968.716684 eV Core-core repulsion = 25802.494330 eV Total energy + Delta-G solvation = -4166.222354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.61528 -41.10989 -39.44269 -38.82468 -36.10446 -35.87242 -34.27514 -33.51875 -32.78679 -32.11991 -30.42520 -29.13409 -26.88127 -26.69066 -25.48448 -24.93456 -23.34577 -22.58625 -21.64732 -20.19985 -19.97030 -19.68765 -18.75891 -17.83441 -17.49456 -17.31133 -17.01819 -16.72924 -16.41419 -16.39344 -16.05157 -15.95747 -15.60523 -15.23158 -14.91565 -14.74549 -14.63509 -14.50738 -14.14092 -14.04933 -13.76148 -13.58348 -13.38592 -13.21841 -13.10024 -13.03602 -12.83021 -12.69716 -12.39291 -12.34767 -12.25117 -12.07653 -11.92050 -11.82779 -11.78764 -11.45747 -11.27564 -11.07705 -10.93078 -10.81398 -9.71421 -9.68074 -9.34508 -8.01902 -5.37874 1.40568 1.44020 1.46177 1.50894 1.56988 1.67342 2.03748 2.49518 2.84138 3.18937 3.27911 3.47343 3.68486 3.74436 3.77680 3.85211 3.91965 3.98472 3.99844 4.07772 4.09795 4.19444 4.25558 4.32743 4.40599 4.42694 4.47633 4.56019 4.63322 4.69841 4.72382 4.74606 4.80676 4.82940 4.85891 4.90679 4.91571 5.02510 5.14170 5.22348 5.32421 5.33663 5.46695 5.77191 6.07508 6.18438 6.21324 6.50378 6.99195 7.06094 7.10608 7.80051 7.99566 9.19066 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014080 B = 0.002376 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.174394 B =11781.254700 C =13264.374020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.137 3.863 3 H 0.080 0.920 4 C -0.129 4.129 5 C 0.169 3.831 6 H 0.064 0.936 7 N -0.737 5.737 8 C -0.234 4.234 9 H 0.059 0.941 10 C -0.061 4.061 11 N -0.982 5.982 12 Si 0.954 3.046 13 H -0.277 1.277 14 H -0.301 1.301 15 H -0.247 1.247 16 C 0.083 3.917 17 N -0.610 5.610 18 C 0.532 3.468 19 O -0.567 6.567 20 C -0.119 4.119 21 C -0.111 4.111 22 C 0.515 3.485 23 O -0.579 6.579 24 N -0.619 5.619 25 C 0.067 3.933 26 C 0.044 3.956 27 O -0.395 6.395 28 C 0.053 3.947 29 C 0.072 3.928 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.370 0.630 36 H 0.258 0.742 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.090 0.910 44 H 0.114 0.886 45 H 0.058 0.942 46 H 0.131 0.869 47 H 0.053 0.947 48 H 0.125 0.875 49 H 0.086 0.914 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.911 19.244 -20.437 28.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.098 0.902 4 C -0.168 4.168 5 C 0.059 3.941 6 H 0.082 0.918 7 N -0.379 5.379 8 C -0.365 4.365 9 H 0.077 0.923 10 C -0.253 4.253 11 N -0.632 5.632 12 Si 0.782 3.218 13 H -0.203 1.203 14 H -0.228 1.228 15 H -0.172 1.172 16 C -0.043 4.043 17 N -0.343 5.343 18 C 0.322 3.678 19 O -0.448 6.448 20 C -0.159 4.159 21 C -0.151 4.151 22 C 0.305 3.695 23 O -0.459 6.459 24 N -0.353 5.353 25 C -0.055 4.055 26 C -0.033 4.033 27 O -0.313 6.313 28 C -0.024 4.024 29 C -0.050 4.050 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.204 0.796 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.108 0.892 44 H 0.133 0.867 45 H 0.076 0.924 46 H 0.149 0.851 47 H 0.071 0.929 48 H 0.143 0.857 49 H 0.105 0.895 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.047 19.071 -20.731 29.037 hybrid contribution 1.132 -0.504 0.956 1.565 sum -5.915 18.567 -19.775 27.763 Atomic orbital electron populations 1.22077 0.94009 1.02033 1.03093 1.21598 0.95193 0.96038 0.83773 0.90183 1.23006 1.02713 0.94250 0.96785 1.21394 0.91033 0.92770 0.88878 0.91751 1.42577 1.35133 1.02681 1.57554 1.19010 1.11188 0.82537 1.23754 0.92339 1.25514 1.01503 0.96402 1.01887 1.69885 1.37554 1.09195 1.46585 0.85426 0.78289 0.78933 0.79193 1.20294 1.22768 1.17183 1.23119 0.94869 0.87812 0.98482 1.48626 1.50100 1.30318 1.05263 1.20413 0.80063 0.84612 0.82713 1.90629 1.40370 1.30078 1.83715 1.21311 1.02855 1.00046 0.91694 1.21330 1.03497 1.00343 0.89898 1.21034 0.79748 0.84509 0.84249 1.90726 1.40450 1.30696 1.84024 1.48278 1.50949 1.30916 1.05153 1.22830 0.94172 0.86977 1.01549 1.23247 0.99529 0.92979 0.87552 1.87956 1.63982 1.45363 1.34011 1.23026 0.91053 0.88775 0.99563 1.22377 0.99945 0.95046 0.87678 0.89676 0.92466 0.93159 0.88360 0.89836 0.79586 0.93338 0.91394 0.91492 0.88584 0.88884 0.86835 0.86602 0.89163 0.86741 0.92406 0.85081 0.92877 0.85675 0.89524 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.05 71.98 0.65 -2.89 16 2 C 0.14 3.41 3.49 45.34 0.16 3.56 16 3 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 4 C -0.13 -3.33 6.14 31.78 0.20 -3.14 16 5 C 0.17 5.79 3.72 46.39 0.17 5.97 16 6 H 0.06 2.37 8.09 -2.39 -0.02 2.35 16 7 N -0.74 -31.59 5.05 -316.37 -1.60 -33.19 16 8 C -0.23 -12.68 10.44 84.03 0.88 -11.80 16 9 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 10 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 11 N -0.98 -61.81 13.97 21.65 0.30 -61.51 16 12 Si 0.95 43.66 27.74 68.60 1.90 45.56 16 13 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 14 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 15 H -0.25 -10.00 6.52 99.48 0.65 -9.35 16 16 C 0.08 2.62 6.38 86.86 0.55 3.17 16 17 N -0.61 -16.97 3.08 -788.06 -2.43 -19.40 16 18 C 0.53 14.52 7.63 87.66 0.67 15.19 16 19 O -0.57 -16.88 14.89 -3.03 -0.05 -16.93 16 20 C -0.12 -2.89 3.99 29.85 0.12 -2.78 16 21 C -0.11 -2.13 3.36 29.85 0.10 -2.03 16 22 C 0.51 11.64 7.71 87.65 0.68 12.31 16 23 O -0.58 -18.17 15.45 -3.03 -0.05 -18.21 16 24 N -0.62 -10.62 3.01 -816.45 -2.46 -13.08 16 25 C 0.07 0.69 6.57 86.49 0.57 1.26 16 26 C 0.04 0.42 7.00 72.22 0.51 0.92 16 27 O -0.39 -5.58 10.74 -148.98 -1.60 -7.18 16 28 C 0.05 0.67 6.99 72.09 0.50 1.17 16 29 C 0.07 1.15 6.64 86.37 0.57 1.73 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.45 6.77 -2.38 -0.02 1.44 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 2.28 7.83 -2.38 -0.02 2.26 16 34 H 0.08 2.04 8.00 -2.39 -0.02 2.02 16 35 H 0.37 15.05 5.62 -92.71 -0.52 14.53 16 36 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.07 2.22 7.48 -2.39 -0.02 2.20 16 39 H 0.10 2.43 8.10 -2.39 -0.02 2.41 16 40 H 0.09 2.45 7.81 -2.39 -0.02 2.43 16 41 H 0.11 1.93 7.96 -2.39 -0.02 1.91 16 42 H 0.12 1.87 7.63 -2.39 -0.02 1.85 16 43 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.11 0.87 6.05 -2.39 -0.01 0.86 16 45 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 46 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.13 1.07 8.14 -2.39 -0.02 1.06 16 49 H 0.09 1.69 7.08 -2.39 -0.02 1.67 16 50 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -74.18 395.49 1.17 -73.01 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 0.35 Total: 31.30 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 6.79 Total: 19.62 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -6.18 Total: -127.17 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.69 Total: -42.33 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.90 Total: 45.56 kcal Total: -74.18 1.17 -73.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700853028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.656 kcal (2) G-P(sol) polarization free energy of solvation -74.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds