Wall clock time and date at job start Tue Mar 31 2020 23:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99758 * 2 1 4 4 C 1.53003 * 109.47223 * 125.00257 * 3 2 1 5 5 O 1.42895 * 109.47267 * 179.97438 * 4 3 2 6 6 C 1.42901 * 113.99991 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46859 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00138 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99825 * 179.97438 * 7 6 5 10 10 C 1.47419 * 125.64572 * 359.96009 * 9 7 6 11 11 C 1.55121 * 104.94289 * 156.03084 * 10 9 7 12 12 C 1.55160 * 101.48553 * 36.77799 * 11 10 9 13 13 H 1.09000 * 110.72049 * 83.16751 * 12 11 10 14 14 N 1.46893 * 110.72351 * 206.26728 * 12 11 10 15 15 C 1.46903 * 111.00304 * 271.15557 * 14 12 11 16 16 C 1.50696 * 109.47177 * 179.97438 * 15 14 12 17 17 O 1.21292 * 120.00262 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99627 * 179.97438 * 16 15 14 19 19 C 1.37090 * 119.99714 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00232 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99992 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00236 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00316 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00267 * 23 21 19 26 26 H 1.48504 * 109.46913 * 150.00066 * 23 21 19 27 27 C 1.47019 * 125.64867 * 180.02562 * 9 7 6 28 28 H 1.08999 * 109.88459 * 300.44259 * 27 9 7 29 29 C 1.52999 * 109.88072 * 61.60724 * 27 9 7 30 30 H 1.08003 * 119.99963 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00325 * 180.02562 * 1 2 3 32 32 H 1.08003 * 119.99963 * 179.97438 * 2 1 3 33 33 H 1.08990 * 109.47433 * 4.99482 * 3 2 1 34 34 H 1.09003 * 109.46836 * 244.99709 * 3 2 1 35 35 H 1.08999 * 109.47539 * 59.99136 * 4 3 2 36 36 H 1.09003 * 109.46767 * 299.99494 * 4 3 2 37 37 H 1.08993 * 109.47355 * 59.99967 * 6 5 4 38 38 H 1.08995 * 109.47227 * 299.99639 * 6 5 4 39 39 H 1.09001 * 110.36918 * 274.74053 * 10 9 7 40 40 H 1.09004 * 110.36924 * 37.06837 * 10 9 7 41 41 H 1.08996 * 110.93605 * 278.78516 * 11 10 9 42 42 H 1.09004 * 111.16499 * 154.86466 * 11 10 9 43 43 H 1.00899 * 111.00478 * 147.19736 * 14 12 11 44 44 H 1.09005 * 109.46883 * 59.99694 * 15 14 12 45 45 H 1.09002 * 109.46817 * 300.00144 * 15 14 12 46 46 H 0.96999 * 120.00048 * 0.02562 * 18 16 15 47 47 H 0.97001 * 119.99781 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.47038 * 177.80837 * 29 27 9 49 49 H 1.09004 * 109.47595 * 297.81092 * 29 27 9 50 50 H 1.08998 * 109.47077 * 57.80782 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 8 3.7499 2.5704 1.1813 6 6 4.6886 2.6996 2.2509 7 6 5.3816 4.0343 2.1526 8 8 5.0990 4.7996 1.2553 9 7 6.3146 4.3778 3.0626 10 6 6.7515 3.5483 4.2003 11 6 8.1776 4.0550 4.5404 12 6 8.0331 5.5787 4.2853 13 1 7.6033 6.0762 5.1547 14 7 9.3308 6.1728 3.9376 15 6 10.0511 6.6062 5.1423 16 6 11.3746 7.2085 4.7468 17 8 11.6870 7.2711 3.5764 18 7 12.2109 7.6786 5.6936 19 6 13.4147 8.2270 5.3337 20 1 13.6928 8.2827 4.2916 21 6 14.2771 8.7112 6.3098 22 7 15.4313 9.2364 5.9649 23 14 13.7957 8.6155 8.1122 24 1 13.0664 9.8508 8.4960 25 1 12.9198 7.4360 8.3286 26 1 15.0184 8.4835 8.9447 27 6 7.0642 5.6423 3.0858 28 1 7.6278 5.7562 2.1598 29 6 6.0986 6.8165 3.2583 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6213 1.4026 -0.9314 35 1 3.7400 0.5066 1.0921 36 1 2.4772 1.2357 2.1130 37 1 5.4276 1.9012 2.1842 38 1 4.1648 2.6312 3.2043 39 1 6.0874 3.6930 5.0524 40 1 6.7797 2.4968 3.9144 41 1 8.9171 3.6152 3.8712 42 1 8.4281 3.8554 5.5823 43 1 9.2163 6.9379 3.2899 44 1 10.2225 5.7477 5.7917 45 1 9.4570 7.3502 5.6729 46 1 11.9609 7.6289 6.6295 47 1 16.0331 9.5748 6.6463 48 1 6.6640 7.7468 3.3137 49 1 5.4178 6.8551 2.4079 50 1 5.5260 6.6841 4.1763 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700856047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:53 Heat of formation + Delta-G solvation = -84.980098 kcal Electronic energy + Delta-G solvation = -28680.538892 eV Core-core repulsion = 24515.777187 eV Total energy + Delta-G solvation = -4164.761705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.58198 -38.89123 -38.34197 -37.52270 -35.41829 -34.87763 -33.88163 -31.88223 -31.65941 -31.05372 -30.08343 -27.72243 -27.02759 -25.06584 -23.58631 -23.47545 -22.98501 -20.81144 -20.32595 -19.57126 -19.19682 -18.32478 -17.58542 -17.09388 -16.76623 -16.52992 -16.07278 -15.70127 -15.42469 -15.16032 -14.99112 -14.75173 -14.08927 -14.05536 -13.95806 -13.84012 -13.41328 -13.28966 -13.14227 -13.10906 -12.83666 -12.59255 -12.32985 -12.19805 -11.99421 -11.90541 -11.83135 -11.65666 -11.57119 -11.53293 -11.26567 -11.11114 -10.82604 -10.61985 -10.14964 -9.99758 -9.94697 -9.84959 -9.59705 -8.92748 -8.63540 -8.28178 -8.19577 -6.32946 -3.84586 1.72296 2.33124 2.36680 3.00020 3.04365 3.13077 3.41628 3.70884 3.96829 4.07488 4.08528 4.32688 4.44027 4.48473 4.57750 4.63688 4.70105 4.74045 4.78660 4.86173 4.88698 4.94153 4.94676 5.10888 5.15991 5.20911 5.26001 5.33742 5.36118 5.45705 5.47452 5.54971 5.58110 5.70927 5.74670 5.85323 5.88892 5.98342 6.06982 6.11623 6.12559 6.23780 6.62935 7.01145 7.21837 7.45250 7.55772 7.93360 8.12358 8.57355 8.92980 9.40093 9.79906 10.80153 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.037239 B = 0.001562 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.721125 B =17919.678103 C =18103.718777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.155 4.155 3 C -0.094 4.094 4 C 0.065 3.935 5 O -0.364 6.364 6 C 0.051 3.949 7 C 0.530 3.470 8 O -0.515 6.515 9 N -0.612 5.612 10 C 0.096 3.904 11 C -0.124 4.124 12 C 0.078 3.922 13 H 0.062 0.938 14 N -0.656 5.656 15 C 0.049 3.951 16 C 0.449 3.551 17 O -0.563 6.563 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.276 1.276 27 C 0.136 3.864 28 H 0.090 0.910 29 C -0.165 4.165 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.355 0.645 44 H 0.088 0.912 45 H 0.047 0.953 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.743 -18.164 -0.481 33.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.173 4.173 3 C -0.131 4.131 4 C -0.011 4.011 5 O -0.283 6.283 6 C -0.029 4.029 7 C 0.317 3.683 8 O -0.390 6.390 9 N -0.349 5.349 10 C -0.027 4.027 11 C -0.163 4.163 12 C -0.033 4.033 13 H 0.080 0.920 14 N -0.290 5.290 15 C -0.084 4.084 16 C 0.235 3.765 17 O -0.445 6.445 18 N -0.229 5.229 19 C -0.435 4.435 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.202 1.202 27 C 0.033 3.967 28 H 0.108 0.892 29 C -0.223 4.223 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.176 0.824 44 H 0.106 0.894 45 H 0.065 0.935 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -27.245 -18.065 -1.966 32.749 hybrid contribution -0.569 0.444 2.153 2.271 sum -27.814 -17.620 0.187 32.926 Atomic orbital electron populations 1.23926 0.95899 1.02132 1.00422 1.22798 0.96022 0.97944 1.00520 1.20642 0.97927 0.95971 0.98547 1.22504 0.94005 0.85967 0.98647 1.87994 1.54302 1.37588 1.48375 1.22141 0.93063 0.95779 0.91899 1.19825 0.79143 0.88154 0.81153 1.90737 1.62777 1.52398 1.33055 1.48388 1.39505 1.18929 1.28082 1.22471 0.96228 0.95326 0.88702 1.22922 0.95409 0.95045 1.02896 1.22625 0.89041 0.95922 0.95729 0.91984 1.60141 1.16759 1.38137 1.13955 1.21753 0.94655 0.99435 0.92536 1.19672 0.86189 0.84106 0.86581 1.90580 1.76337 1.59643 1.17944 1.42196 1.18073 1.55522 1.07130 1.19439 0.91741 1.35013 0.97277 0.86260 1.25039 0.95494 0.97131 0.98428 1.69623 1.08813 1.39465 1.34151 0.86673 0.78901 0.78640 0.85160 1.19664 1.19494 1.20161 1.21670 0.91947 0.83452 0.99634 0.89231 1.22176 1.00011 0.97367 1.02724 0.88366 0.88250 0.87122 0.90447 0.89827 0.92904 0.92992 0.90212 0.90343 0.91152 0.90411 0.89018 0.89801 0.82448 0.89379 0.93545 0.79705 0.91593 0.91418 0.90906 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.93 14.32 29.01 0.42 -0.51 16 2 C -0.15 -0.83 9.52 -36.03 -0.34 -1.17 16 3 C -0.09 -0.62 6.03 -27.88 -0.17 -0.79 16 4 C 0.07 0.45 5.92 37.16 0.22 0.67 16 5 O -0.36 -3.82 9.88 -55.14 -0.54 -4.37 16 6 C 0.05 0.43 5.42 36.01 0.20 0.62 16 7 C 0.53 6.31 7.72 -10.98 -0.08 6.23 16 8 O -0.52 -8.41 15.55 -14.35 -0.22 -8.64 16 9 N -0.61 -6.25 3.07 -162.89 -0.50 -6.75 16 10 C 0.10 0.67 6.69 -2.42 -0.02 0.65 16 11 C -0.12 -1.08 6.78 -24.47 -0.17 -1.25 16 12 C 0.08 0.83 2.78 -65.88 -0.18 0.64 16 13 H 0.06 0.60 7.56 -51.93 -0.39 0.21 16 14 N -0.66 -9.43 5.95 -106.05 -0.63 -10.06 16 15 C 0.05 0.75 6.04 -4.98 -0.03 0.72 16 16 C 0.45 9.87 7.82 -10.98 -0.09 9.78 16 17 O -0.56 -14.88 15.78 5.55 0.09 -14.79 16 18 N -0.59 -13.70 5.09 -10.96 -0.06 -13.75 16 19 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 20 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.53 13.96 55.50 0.77 -24.75 16 23 Si 0.88 18.99 27.74 -169.99 -4.71 14.28 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 C 0.14 1.55 2.98 -66.95 -0.20 1.35 16 28 H 0.09 1.21 7.93 -51.93 -0.41 0.80 16 29 C -0.16 -1.79 9.09 37.16 0.34 -1.46 16 30 H 0.10 0.47 7.84 -52.48 -0.41 0.06 16 31 H 0.10 0.38 8.06 -52.49 -0.42 -0.04 16 32 H 0.11 0.47 8.06 -52.48 -0.42 0.05 16 33 H 0.08 0.55 7.79 -51.93 -0.40 0.15 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.49 7.85 -51.93 -0.41 0.08 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.39 7.48 -51.93 -0.39 0.00 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.35 5.44 8.08 -39.29 -0.32 5.13 16 44 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 46 H 0.37 7.48 5.76 -40.82 -0.24 7.24 16 47 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.07 0.93 6.90 -51.93 -0.36 0.57 16 50 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 413.01 15.07 6.22 6.22 Total: -1.00 -35.67 413.01 -8.31 -43.98 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -8.38 Total: 10.81 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -0.36 Total: 7.82 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.41 Total: -55.32 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.68 Total: -27.79 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.67 -8.31 -43.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700856047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.998 kcal (2) G-P(sol) polarization free energy of solvation -35.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds