Wall clock time and date at job start Tue Mar 31 2020 23:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99758 * 2 1 4 4 C 1.53003 * 109.47223 * 125.00257 * 3 2 1 5 5 O 1.42895 * 109.47267 * 179.97438 * 4 3 2 6 6 C 1.42901 * 113.99991 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46859 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00138 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99825 * 179.97438 * 7 6 5 10 10 C 1.47419 * 125.64572 * 359.96009 * 9 7 6 11 11 C 1.55121 * 104.94289 * 156.03084 * 10 9 7 12 12 C 1.55160 * 101.48553 * 36.77799 * 11 10 9 13 13 H 1.09000 * 110.72049 * 83.16751 * 12 11 10 14 14 N 1.46893 * 110.72351 * 206.26728 * 12 11 10 15 15 C 1.46903 * 111.00304 * 271.15557 * 14 12 11 16 16 C 1.50696 * 109.47177 * 179.97438 * 15 14 12 17 17 O 1.21292 * 120.00262 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99627 * 179.97438 * 16 15 14 19 19 C 1.37090 * 119.99714 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00232 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99992 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00236 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00316 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00267 * 23 21 19 26 26 H 1.48504 * 109.46913 * 150.00066 * 23 21 19 27 27 C 1.47019 * 125.64867 * 180.02562 * 9 7 6 28 28 H 1.08999 * 109.88459 * 300.44259 * 27 9 7 29 29 C 1.52999 * 109.88072 * 61.60724 * 27 9 7 30 30 H 1.08003 * 119.99963 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00325 * 180.02562 * 1 2 3 32 32 H 1.08003 * 119.99963 * 179.97438 * 2 1 3 33 33 H 1.08990 * 109.47433 * 4.99482 * 3 2 1 34 34 H 1.09003 * 109.46836 * 244.99709 * 3 2 1 35 35 H 1.08999 * 109.47539 * 59.99136 * 4 3 2 36 36 H 1.09003 * 109.46767 * 299.99494 * 4 3 2 37 37 H 1.08993 * 109.47355 * 59.99967 * 6 5 4 38 38 H 1.08995 * 109.47227 * 299.99639 * 6 5 4 39 39 H 1.09001 * 110.36918 * 274.74053 * 10 9 7 40 40 H 1.09004 * 110.36924 * 37.06837 * 10 9 7 41 41 H 1.08996 * 110.93605 * 278.78516 * 11 10 9 42 42 H 1.09004 * 111.16499 * 154.86466 * 11 10 9 43 43 H 1.00899 * 111.00478 * 147.19736 * 14 12 11 44 44 H 1.09005 * 109.46883 * 59.99694 * 15 14 12 45 45 H 1.09002 * 109.46817 * 300.00144 * 15 14 12 46 46 H 0.96999 * 120.00048 * 0.02562 * 18 16 15 47 47 H 0.97001 * 119.99781 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.47038 * 177.80837 * 29 27 9 49 49 H 1.09004 * 109.47595 * 297.81092 * 29 27 9 50 50 H 1.08998 * 109.47077 * 57.80782 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 8 3.7499 2.5704 1.1813 6 6 4.6886 2.6996 2.2509 7 6 5.3816 4.0343 2.1526 8 8 5.0990 4.7996 1.2553 9 7 6.3146 4.3778 3.0626 10 6 6.7515 3.5483 4.2003 11 6 8.1776 4.0550 4.5404 12 6 8.0331 5.5787 4.2853 13 1 7.6033 6.0762 5.1547 14 7 9.3308 6.1728 3.9376 15 6 10.0511 6.6062 5.1423 16 6 11.3746 7.2085 4.7468 17 8 11.6870 7.2711 3.5764 18 7 12.2109 7.6786 5.6936 19 6 13.4147 8.2270 5.3337 20 1 13.6928 8.2827 4.2916 21 6 14.2771 8.7112 6.3098 22 7 15.4313 9.2364 5.9649 23 14 13.7957 8.6155 8.1122 24 1 13.0664 9.8508 8.4960 25 1 12.9198 7.4360 8.3286 26 1 15.0184 8.4835 8.9447 27 6 7.0642 5.6423 3.0858 28 1 7.6278 5.7562 2.1598 29 6 6.0986 6.8165 3.2583 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6213 1.4026 -0.9314 35 1 3.7400 0.5066 1.0921 36 1 2.4772 1.2357 2.1130 37 1 5.4276 1.9012 2.1842 38 1 4.1648 2.6312 3.2043 39 1 6.0874 3.6930 5.0524 40 1 6.7797 2.4968 3.9144 41 1 8.9171 3.6152 3.8712 42 1 8.4281 3.8554 5.5823 43 1 9.2163 6.9379 3.2899 44 1 10.2225 5.7477 5.7917 45 1 9.4570 7.3502 5.6729 46 1 11.9609 7.6289 6.6295 47 1 16.0331 9.5748 6.6463 48 1 6.6640 7.7468 3.3137 49 1 5.4178 6.8551 2.4079 50 1 5.5260 6.6841 4.1763 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700856047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:52 Heat of formation + Delta-G solvation = -112.407455 kcal Electronic energy + Delta-G solvation = -28681.728231 eV Core-core repulsion = 24515.777187 eV Total energy + Delta-G solvation = -4165.951044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.41393 -40.29462 -39.38616 -38.40684 -36.22951 -35.88779 -35.59350 -33.73913 -32.68844 -31.89521 -30.63251 -28.75924 -28.01984 -26.40899 -24.87373 -24.00523 -23.76347 -21.61452 -21.30717 -20.77398 -20.39636 -19.91019 -18.35848 -17.84187 -17.74362 -17.33912 -17.09645 -16.95831 -16.52367 -16.34689 -15.90135 -15.69558 -15.44482 -15.15092 -14.74997 -14.68319 -14.52650 -14.38110 -14.27866 -14.06665 -13.91819 -13.79371 -13.48403 -13.20891 -13.13428 -12.85480 -12.70701 -12.54935 -12.39924 -12.35287 -12.15478 -11.98927 -11.96294 -11.93952 -11.65325 -11.49695 -10.84202 -10.70502 -10.42508 -10.26967 -10.23688 -9.74041 -9.37266 -8.39813 -6.01195 1.31747 1.31996 1.37854 1.46955 1.52397 1.62245 1.97945 2.25137 2.70152 2.86727 3.16978 3.32317 3.39533 3.64549 3.73385 3.99727 4.03443 4.11380 4.16040 4.17346 4.21807 4.25818 4.29103 4.34725 4.38285 4.45339 4.46898 4.48930 4.55110 4.59358 4.72763 4.78250 4.89663 4.96554 5.02207 5.07397 5.10002 5.16605 5.27112 5.34878 5.54510 5.72937 5.85131 5.91900 6.06247 6.08277 6.28065 6.47534 6.61235 6.89859 7.09938 7.41458 7.98901 8.78008 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.037239 B = 0.001562 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.721125 B =17919.678103 C =18103.718777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C -0.095 4.095 4 C 0.064 3.936 5 O -0.402 6.402 6 C 0.055 3.945 7 C 0.519 3.481 8 O -0.575 6.575 9 N -0.610 5.610 10 C 0.096 3.904 11 C -0.122 4.122 12 C 0.083 3.917 13 H 0.088 0.912 14 N -0.677 5.677 15 C 0.065 3.935 16 C 0.447 3.553 17 O -0.617 6.617 18 N -0.589 5.589 19 C -0.331 4.331 20 H 0.052 0.948 21 C -0.015 4.015 22 N -0.936 5.936 23 Si 0.967 3.033 24 H -0.258 1.258 25 H -0.226 1.226 26 H -0.277 1.277 27 C 0.134 3.866 28 H 0.054 0.946 29 C -0.156 4.156 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.343 0.657 44 H 0.121 0.879 45 H 0.082 0.918 46 H 0.391 0.609 47 H 0.279 0.721 48 H 0.069 0.931 49 H 0.045 0.955 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.370 -20.842 3.996 37.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.177 4.177 3 C -0.133 4.133 4 C -0.012 4.012 5 O -0.322 6.322 6 C -0.024 4.024 7 C 0.309 3.691 8 O -0.454 6.454 9 N -0.345 5.345 10 C -0.026 4.026 11 C -0.160 4.160 12 C -0.027 4.027 13 H 0.105 0.895 14 N -0.310 5.310 15 C -0.067 4.067 16 C 0.235 3.765 17 O -0.502 6.502 18 N -0.231 5.231 19 C -0.460 4.460 20 H 0.070 0.930 21 C -0.214 4.214 22 N -0.577 5.577 23 Si 0.786 3.214 24 H -0.182 1.182 25 H -0.149 1.149 26 H -0.202 1.202 27 C 0.030 3.970 28 H 0.072 0.928 29 C -0.214 4.214 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.129 0.871 43 H 0.162 0.838 44 H 0.139 0.861 45 H 0.100 0.900 46 H 0.227 0.773 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.064 0.936 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -29.896 -20.795 2.550 36.506 hybrid contribution 0.267 1.285 0.581 1.435 sum -29.629 -19.510 3.132 35.614 Atomic orbital electron populations 1.24084 0.95943 1.02715 0.99776 1.22820 0.96142 0.97678 1.01065 1.20643 0.97840 0.96478 0.98313 1.22654 0.94211 0.85149 0.99170 1.87956 1.55137 1.39471 1.49604 1.22269 0.93510 0.93858 0.92756 1.20650 0.79048 0.89070 0.80359 1.90708 1.64836 1.54389 1.35498 1.48484 1.38586 1.18832 1.28619 1.22765 0.95442 0.96060 0.88297 1.22951 0.96057 0.93025 1.03996 1.22692 0.86945 0.97339 0.95693 0.89451 1.60160 1.19190 1.37910 1.13755 1.21683 0.90703 1.01065 0.93237 1.21057 0.87880 0.82041 0.85548 1.90563 1.77935 1.61133 1.20562 1.42000 1.16783 1.55831 1.08499 1.19008 0.94599 1.37504 0.94902 0.92954 1.26151 0.94698 0.95543 1.04991 1.69817 1.10593 1.40587 1.36696 0.85345 0.79339 0.80741 0.75951 1.18217 1.14928 1.20202 1.21556 0.92206 0.84572 0.98704 0.92825 1.22081 0.99542 0.97437 1.02372 0.88648 0.86884 0.85762 0.91628 0.91038 0.91242 0.91409 0.87579 0.87045 0.88092 0.87821 0.91223 0.87093 0.83756 0.86088 0.90004 0.77325 0.91181 0.91252 0.93580 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 14.32 67.78 0.97 -0.66 16 2 C -0.16 -1.49 9.52 25.65 0.24 -1.25 16 3 C -0.10 -1.24 6.03 29.85 0.18 -1.06 16 4 C 0.06 0.77 5.92 71.98 0.43 1.19 16 5 O -0.40 -8.10 9.88 -129.94 -1.28 -9.38 16 6 C 0.06 0.78 5.42 71.24 0.39 1.17 16 7 C 0.52 12.02 7.72 87.66 0.68 12.69 16 8 O -0.58 -19.71 15.55 16.02 0.25 -19.46 16 9 N -0.61 -11.35 3.07 -787.64 -2.41 -13.76 16 10 C 0.10 0.90 6.69 86.93 0.58 1.48 16 11 C -0.12 -1.64 6.78 32.06 0.22 -1.42 16 12 C 0.08 1.53 2.78 46.11 0.13 1.65 16 13 H 0.09 1.23 7.56 -2.39 -0.02 1.21 16 14 N -0.68 -18.48 5.95 -489.44 -2.91 -21.39 16 15 C 0.07 1.78 6.04 85.56 0.52 2.30 16 16 C 0.45 19.48 7.82 87.65 0.69 20.17 16 17 O -0.62 -34.05 15.78 -3.07 -0.05 -34.10 16 18 N -0.59 -26.92 5.09 -306.98 -1.56 -28.49 16 19 C -0.33 -19.23 10.16 84.04 0.85 -18.37 16 20 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 21 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 22 N -0.94 -56.28 13.96 21.66 0.30 -55.98 16 23 Si 0.97 37.66 27.74 68.60 1.90 39.57 16 24 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 25 H -0.23 -7.19 6.52 99.48 0.65 -6.54 16 26 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 27 C 0.13 2.96 2.98 45.34 0.14 3.09 16 28 H 0.05 1.56 7.93 -2.39 -0.02 1.54 16 29 C -0.16 -3.34 9.09 71.98 0.65 -2.69 16 30 H 0.10 0.85 7.84 -2.91 -0.02 0.83 16 31 H 0.11 0.66 8.06 -2.91 -0.02 0.63 16 32 H 0.12 0.81 8.06 -2.91 -0.02 0.79 16 33 H 0.06 0.97 7.79 -2.39 -0.02 0.95 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.11 0.92 7.85 -2.39 -0.02 0.90 16 38 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.10 0.50 7.48 -2.39 -0.02 0.48 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.34 10.68 8.08 -89.69 -0.72 9.95 16 44 H 0.12 2.60 8.14 -2.38 -0.02 2.58 16 45 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 46 H 0.39 14.42 5.76 -92.71 -0.53 13.89 16 47 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 48 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.05 1.24 6.90 -2.38 -0.02 1.22 16 50 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -88.36 413.01 0.98 -87.38 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: -0.38 Total: 37.68 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 7.12 Total: 17.93 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -6.59 Total: -119.62 kcal Atomic # 8 Polarization: -61.85 SS G_CDS: -1.08 Total: -62.94 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 1.90 Total: 39.57 kcal Total: -88.36 0.98 -87.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700856047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.024 kcal (2) G-P(sol) polarization free energy of solvation -88.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds