Wall clock time and date at job start Tue Mar 31 2020 23:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.45776 * 2 1 4 4 C 1.53042 * 109.45895 * 240.02317 * 2 1 3 5 5 C 1.53196 * 109.31088 * 178.61528 * 4 2 1 6 6 N 1.46932 * 108.77361 * 54.63482 * 5 4 2 7 7 C 1.34772 * 120.63124 * 126.37043 * 6 5 4 8 8 O 1.21274 * 120.00703 * 174.41612 * 7 6 5 9 9 C 1.50706 * 119.99766 * 354.41329 * 7 6 5 10 10 N 1.46500 * 109.46994 * 180.02562 * 9 7 6 11 11 C 1.46090 * 118.72817 * 269.73253 * 10 9 7 12 12 C 1.53191 * 109.82591 * 161.46301 * 11 10 9 13 13 O 1.43246 * 108.53696 * 49.51825 * 12 11 10 14 14 C 1.42973 * 112.98396 * 291.48804 * 13 12 11 15 15 C 1.33875 * 118.72851 * 90.00634 * 10 9 7 16 16 O 1.21273 * 118.83235 * 1.87726 * 15 10 9 17 17 C 1.46923 * 118.73852 * 306.64338 * 6 5 4 18 18 H 1.09002 * 109.58769 * 293.56622 * 17 6 5 19 19 C 1.53005 * 109.58495 * 173.14574 * 17 6 5 20 20 N 1.46503 * 109.46913 * 181.62428 * 19 17 6 21 21 C 1.36933 * 119.99631 * 184.94863 * 20 19 17 22 22 H 1.07994 * 120.00434 * 0.02562 * 21 20 19 23 23 C 1.38822 * 119.99727 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99760 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99685 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47235 * 60.00202 * 25 23 21 27 27 H 1.48502 * 109.46593 * 179.97438 * 25 23 21 28 28 H 1.48491 * 109.47376 * 299.99972 * 25 23 21 29 29 C 1.52762 * 109.00949 * 53.30981 * 17 6 5 30 30 H 1.08997 * 109.47581 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47255 * 299.98156 * 1 2 3 32 32 H 1.09003 * 109.47055 * 59.97392 * 1 2 3 33 33 H 1.08996 * 109.49689 * 58.66577 * 4 2 1 34 34 H 1.09000 * 109.49952 * 298.56620 * 4 2 1 35 35 H 1.09001 * 109.58248 * 294.84857 * 5 4 2 36 36 H 1.08992 * 109.58823 * 174.42212 * 5 4 2 37 37 H 1.09002 * 109.47238 * 300.00679 * 9 7 6 38 38 H 1.09004 * 109.46785 * 60.00186 * 9 7 6 39 39 H 1.08996 * 109.40163 * 281.77953 * 11 10 9 40 40 H 1.08998 * 109.39574 * 41.51008 * 11 10 9 41 41 H 1.09000 * 109.79285 * 289.73164 * 12 11 10 42 42 H 1.08997 * 109.54570 * 169.15781 * 12 11 10 43 43 H 1.09003 * 109.41205 * 289.49202 * 14 13 12 44 44 H 1.09001 * 109.35457 * 169.66828 * 14 13 12 45 45 H 1.08994 * 109.46662 * 301.61817 * 19 17 6 46 46 H 1.09000 * 109.47095 * 61.62448 * 19 17 6 47 47 H 0.97001 * 120.00258 * 4.94496 * 20 19 17 48 48 H 0.97005 * 119.99716 * 179.97438 * 24 23 21 49 49 H 1.08998 * 109.56342 * 185.55278 * 29 17 6 50 50 H 1.09001 * 109.38587 * 65.51495 * 29 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 3.5714 -0.6888 -1.2641 6 7 4.0678 -1.2489 0.0003 7 6 4.9614 -2.2578 0.0006 8 8 5.4400 -2.6438 1.0459 9 6 5.3657 -2.9066 -1.2983 10 7 6.3397 -3.9679 -1.0315 11 6 7.7616 -3.6329 -1.0343 12 6 8.5532 -4.7210 -0.3022 13 8 8.1594 -5.9972 -0.8201 14 6 6.8168 -6.3489 -0.4765 15 6 5.8925 -5.2083 -0.8002 16 8 4.6994 -5.4193 -0.8530 17 6 3.5671 -0.6921 1.2644 18 1 3.9097 0.3371 1.3716 19 6 4.0829 -1.5319 2.4347 20 7 3.5508 -0.9979 3.6909 21 6 3.9577 -1.5269 4.8866 22 1 4.6711 -2.3375 4.9037 23 6 3.4538 -1.0205 6.0769 24 7 2.5855 -0.0317 6.0561 25 14 4.0083 -1.7427 7.7080 26 1 5.4786 -1.5850 7.8449 27 1 3.3290 -1.0314 8.8206 28 1 3.6586 -3.1851 7.7552 29 6 2.0398 -0.7205 1.2502 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5135 0.8901 32 1 -0.3633 0.5143 -0.8898 33 1 1.6572 -0.2211 -2.1398 34 1 1.6978 -1.7559 -1.2380 35 1 3.9142 0.3407 -1.3674 36 1 3.9417 -1.2849 -2.0981 37 1 4.4862 -3.3336 -1.7803 38 1 5.8125 -2.1592 -1.9540 39 1 8.1132 -3.5549 -2.0631 40 1 7.9096 -2.6784 -0.5293 41 1 8.3391 -4.6779 0.7657 42 1 9.6197 -4.5716 -0.4701 43 1 6.7615 -6.5689 0.5896 44 1 6.5177 -7.2300 -1.0443 45 1 3.7571 -2.5648 2.3121 46 1 5.1721 -1.4946 2.4565 47 1 2.9103 -0.2696 3.6756 48 1 2.2331 0.3219 6.8879 49 1 1.6572 -0.2203 2.1398 50 1 1.6972 -1.7553 1.2389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707160405.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:56 Heat of formation + Delta-G solvation = -76.088622 kcal Electronic energy + Delta-G solvation = -31608.907217 eV Core-core repulsion = 27444.531075 eV Total energy + Delta-G solvation = -4164.376141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.10468 -40.09321 -37.92111 -37.53761 -35.56283 -34.66897 -33.87129 -32.08912 -30.59366 -29.78086 -29.43694 -28.04155 -26.21615 -25.38948 -24.14662 -23.47907 -22.91308 -21.16623 -20.32365 -19.40878 -18.93240 -17.92578 -17.26717 -17.17033 -16.87666 -16.08782 -15.79934 -15.61591 -15.12253 -14.80124 -14.63547 -14.43915 -14.29562 -13.98845 -13.70681 -13.55073 -13.51916 -13.27426 -13.20371 -13.06383 -12.80052 -12.33054 -12.00317 -11.98218 -11.80823 -11.77618 -11.56945 -11.41892 -10.99126 -10.90065 -10.76496 -10.75004 -10.66684 -10.37733 -10.24857 -9.99923 -9.68785 -9.60889 -9.32127 -8.82422 -8.52658 -8.35757 -6.74749 -5.64998 -2.91076 2.24965 2.54657 2.74495 3.14524 3.45535 3.52075 3.55209 3.57610 4.07702 4.44539 4.47582 4.65381 4.72131 4.73865 4.77605 4.83402 4.90144 4.94793 5.09095 5.13518 5.17237 5.19985 5.27433 5.30965 5.37158 5.43873 5.59425 5.63995 5.69579 5.73492 5.79092 5.89669 5.92276 5.95822 6.07667 6.19672 6.28576 6.30610 6.35356 6.46995 6.62448 6.78396 7.09006 7.13012 7.30060 7.56010 7.84500 7.85474 8.36387 8.56712 9.65553 10.24906 10.60113 11.58626 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008321 B = 0.004167 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.190884 B = 6718.290922 C = 9334.532065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.130 4.130 5 C 0.108 3.892 6 N -0.605 5.605 7 C 0.494 3.506 8 O -0.508 6.508 9 C 0.090 3.910 10 N -0.587 5.587 11 C 0.084 3.916 12 C 0.043 3.957 13 O -0.373 6.373 14 C 0.052 3.948 15 C 0.495 3.505 16 O -0.537 6.537 17 C 0.141 3.859 18 H 0.070 0.930 19 C 0.162 3.838 20 N -0.737 5.737 21 C -0.225 4.225 22 H 0.068 0.932 23 C -0.018 4.018 24 N -0.939 5.939 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 C -0.121 4.121 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.130 0.870 45 H 0.022 0.978 46 H 0.055 0.945 47 H 0.379 0.621 48 H 0.253 0.747 49 H 0.086 0.914 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.131 -3.286 -23.064 24.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.168 4.168 5 C -0.015 4.015 6 N -0.341 5.341 7 C 0.279 3.721 8 O -0.383 6.383 9 C -0.036 4.036 10 N -0.321 5.321 11 C -0.039 4.039 12 C -0.034 4.034 13 O -0.291 6.291 14 C -0.027 4.027 15 C 0.282 3.718 16 O -0.414 6.414 17 C 0.038 3.962 18 H 0.088 0.912 19 C 0.036 3.964 20 N -0.383 5.383 21 C -0.356 4.356 22 H 0.086 0.914 23 C -0.213 4.213 24 N -0.589 5.589 25 Si 0.737 3.263 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 C -0.160 4.160 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.132 0.868 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.134 0.866 43 H 0.112 0.888 44 H 0.148 0.852 45 H 0.039 0.961 46 H 0.072 0.928 47 H 0.212 0.788 48 H 0.063 0.937 49 H 0.104 0.896 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.014 -3.868 -22.517 23.899 hybrid contribution -0.247 0.273 1.074 1.135 sum 6.768 -3.595 -21.443 22.771 Atomic orbital electron populations 1.21802 0.95077 1.01814 1.01551 1.21144 0.95799 0.99437 0.94767 0.91178 1.21995 0.94674 1.01720 0.98456 1.21731 0.94945 0.99195 0.85641 1.48175 1.43164 1.35467 1.07289 1.20974 0.79629 0.79964 0.91487 1.90814 1.53555 1.62023 1.31869 1.21456 0.95372 0.90887 0.95922 1.47039 1.06754 1.07759 1.70521 1.22208 0.79587 1.00325 1.01786 1.23059 0.99975 0.82032 0.98345 1.88160 1.28289 1.36297 1.76337 1.22826 0.80558 0.96004 1.03336 1.20971 0.90077 0.84361 0.76343 1.90753 1.16415 1.83377 1.50833 1.21496 0.93695 0.97865 0.83108 0.91181 1.21247 0.97730 0.93931 0.83510 1.42571 1.52825 1.42361 1.00585 1.19179 1.19527 1.12884 0.84036 0.91394 1.24687 1.00085 0.99072 0.97490 1.69645 1.34525 1.28712 1.25996 0.86272 0.77882 0.78289 0.83827 1.21424 1.21770 1.21418 1.21936 0.94717 1.01449 0.97855 0.92785 0.92261 0.93080 0.90949 0.91362 0.91162 0.90274 0.86776 0.87808 0.90559 0.89348 0.91028 0.86619 0.88764 0.85211 0.96056 0.92768 0.78761 0.93700 0.89571 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.19 37.16 0.34 -1.30 16 2 C -0.09 -1.13 2.68 -90.58 -0.24 -1.37 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.29 5.36 -26.61 -0.14 -1.43 16 5 C 0.11 1.04 6.35 -3.71 -0.02 1.01 16 6 N -0.61 -8.60 2.98 -165.47 -0.49 -9.09 16 7 C 0.49 7.58 7.59 -10.98 -0.08 7.50 16 8 O -0.51 -10.03 11.99 5.56 0.07 -9.97 16 9 C 0.09 1.01 4.15 -5.19 -0.02 0.99 16 10 N -0.59 -6.90 2.32 -175.68 -0.41 -7.31 16 11 C 0.08 0.71 6.63 -4.16 -0.03 0.68 16 12 C 0.04 0.35 6.91 37.26 0.26 0.61 16 13 O -0.37 -3.68 10.85 -35.23 -0.38 -4.06 16 14 C 0.05 0.55 6.98 35.83 0.25 0.80 16 15 C 0.49 6.76 7.58 -11.56 -0.09 6.67 16 16 O -0.54 -9.28 16.36 5.56 0.09 -9.19 16 17 C 0.14 2.49 3.09 -67.82 -0.21 2.28 16 18 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 19 C 0.16 3.75 4.14 -4.04 -0.02 3.73 16 20 N -0.74 -19.98 5.38 -59.91 -0.32 -20.30 16 21 C -0.22 -6.74 9.99 -15.06 -0.15 -6.89 16 22 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 23 C -0.02 -0.55 5.50 -17.43 -0.10 -0.65 16 24 N -0.94 -29.28 13.06 55.49 0.72 -28.56 16 25 Si 0.91 23.57 29.55 -169.99 -5.02 18.54 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 C -0.12 -1.99 4.35 -26.83 -0.12 -2.11 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.55 5.93 -51.93 -0.31 0.25 16 37 H 0.11 1.31 7.01 -51.93 -0.36 0.94 16 38 H 0.10 0.75 7.61 -51.93 -0.40 0.36 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.73 8.13 -51.93 -0.42 0.31 16 41 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.02 0.55 7.26 -51.93 -0.38 0.18 16 46 H 0.05 1.36 6.21 -51.93 -0.32 1.03 16 47 H 0.38 10.42 6.35 -40.82 -0.26 10.16 16 48 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 49 H 0.09 1.61 6.88 -51.93 -0.36 1.25 16 50 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -37.85 389.76 -8.51 -46.36 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -8.27 Total: 7.20 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -0.37 Total: 10.51 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -0.50 Total: -65.26 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.22 Total: -23.22 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.02 Total: 18.54 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.85 -8.51 -46.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707160405.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.730 kcal (2) G-P(sol) polarization free energy of solvation -37.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds