Wall clock time and date at job start Tue Mar 31 2020 23:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.45776 * 2 1 4 4 C 1.53042 * 109.45895 * 240.02317 * 2 1 3 5 5 C 1.53196 * 109.31088 * 178.61528 * 4 2 1 6 6 N 1.46932 * 108.77361 * 54.63482 * 5 4 2 7 7 C 1.34772 * 120.63124 * 126.37043 * 6 5 4 8 8 O 1.21274 * 120.00703 * 174.41612 * 7 6 5 9 9 C 1.50706 * 119.99766 * 354.41329 * 7 6 5 10 10 N 1.46500 * 109.46994 * 180.02562 * 9 7 6 11 11 C 1.46090 * 118.72817 * 269.73253 * 10 9 7 12 12 C 1.53191 * 109.82591 * 161.46301 * 11 10 9 13 13 O 1.43246 * 108.53696 * 49.51825 * 12 11 10 14 14 C 1.42973 * 112.98396 * 291.48804 * 13 12 11 15 15 C 1.33875 * 118.72851 * 90.00634 * 10 9 7 16 16 O 1.21273 * 118.83235 * 1.87726 * 15 10 9 17 17 C 1.46923 * 118.73852 * 306.64338 * 6 5 4 18 18 H 1.09002 * 109.58769 * 293.56622 * 17 6 5 19 19 C 1.53005 * 109.58495 * 173.14574 * 17 6 5 20 20 N 1.46503 * 109.46913 * 181.62428 * 19 17 6 21 21 C 1.36933 * 119.99631 * 184.94863 * 20 19 17 22 22 H 1.07994 * 120.00434 * 0.02562 * 21 20 19 23 23 C 1.38822 * 119.99727 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99760 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99685 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47235 * 60.00202 * 25 23 21 27 27 H 1.48502 * 109.46593 * 179.97438 * 25 23 21 28 28 H 1.48491 * 109.47376 * 299.99972 * 25 23 21 29 29 C 1.52762 * 109.00949 * 53.30981 * 17 6 5 30 30 H 1.08997 * 109.47581 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47255 * 299.98156 * 1 2 3 32 32 H 1.09003 * 109.47055 * 59.97392 * 1 2 3 33 33 H 1.08996 * 109.49689 * 58.66577 * 4 2 1 34 34 H 1.09000 * 109.49952 * 298.56620 * 4 2 1 35 35 H 1.09001 * 109.58248 * 294.84857 * 5 4 2 36 36 H 1.08992 * 109.58823 * 174.42212 * 5 4 2 37 37 H 1.09002 * 109.47238 * 300.00679 * 9 7 6 38 38 H 1.09004 * 109.46785 * 60.00186 * 9 7 6 39 39 H 1.08996 * 109.40163 * 281.77953 * 11 10 9 40 40 H 1.08998 * 109.39574 * 41.51008 * 11 10 9 41 41 H 1.09000 * 109.79285 * 289.73164 * 12 11 10 42 42 H 1.08997 * 109.54570 * 169.15781 * 12 11 10 43 43 H 1.09003 * 109.41205 * 289.49202 * 14 13 12 44 44 H 1.09001 * 109.35457 * 169.66828 * 14 13 12 45 45 H 1.08994 * 109.46662 * 301.61817 * 19 17 6 46 46 H 1.09000 * 109.47095 * 61.62448 * 19 17 6 47 47 H 0.97001 * 120.00258 * 4.94496 * 20 19 17 48 48 H 0.97005 * 119.99716 * 179.97438 * 24 23 21 49 49 H 1.08998 * 109.56342 * 185.55278 * 29 17 6 50 50 H 1.09001 * 109.38587 * 65.51495 * 29 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 3.5714 -0.6888 -1.2641 6 7 4.0678 -1.2489 0.0003 7 6 4.9614 -2.2578 0.0006 8 8 5.4400 -2.6438 1.0459 9 6 5.3657 -2.9066 -1.2983 10 7 6.3397 -3.9679 -1.0315 11 6 7.7616 -3.6329 -1.0343 12 6 8.5532 -4.7210 -0.3022 13 8 8.1594 -5.9972 -0.8201 14 6 6.8168 -6.3489 -0.4765 15 6 5.8925 -5.2083 -0.8002 16 8 4.6994 -5.4193 -0.8530 17 6 3.5671 -0.6921 1.2644 18 1 3.9097 0.3371 1.3716 19 6 4.0829 -1.5319 2.4347 20 7 3.5508 -0.9979 3.6909 21 6 3.9577 -1.5269 4.8866 22 1 4.6711 -2.3375 4.9037 23 6 3.4538 -1.0205 6.0769 24 7 2.5855 -0.0317 6.0561 25 14 4.0083 -1.7427 7.7080 26 1 5.4786 -1.5850 7.8449 27 1 3.3290 -1.0314 8.8206 28 1 3.6586 -3.1851 7.7552 29 6 2.0398 -0.7205 1.2502 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5135 0.8901 32 1 -0.3633 0.5143 -0.8898 33 1 1.6572 -0.2211 -2.1398 34 1 1.6978 -1.7559 -1.2380 35 1 3.9142 0.3407 -1.3674 36 1 3.9417 -1.2849 -2.0981 37 1 4.4862 -3.3336 -1.7803 38 1 5.8125 -2.1592 -1.9540 39 1 8.1132 -3.5549 -2.0631 40 1 7.9096 -2.6784 -0.5293 41 1 8.3391 -4.6779 0.7657 42 1 9.6197 -4.5716 -0.4701 43 1 6.7615 -6.5689 0.5896 44 1 6.5177 -7.2300 -1.0443 45 1 3.7571 -2.5648 2.3121 46 1 5.1721 -1.4946 2.4565 47 1 2.9103 -0.2696 3.6756 48 1 2.2331 0.3219 6.8879 49 1 1.6572 -0.2203 2.1398 50 1 1.6972 -1.7553 1.2389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707160405.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:55 Heat of formation + Delta-G solvation = -104.390129 kcal Electronic energy + Delta-G solvation = -31610.134462 eV Core-core repulsion = 27444.531075 eV Total energy + Delta-G solvation = -4165.603387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.13424 -41.20891 -38.87934 -38.66861 -36.83095 -36.29944 -34.99255 -33.95203 -31.67841 -31.27707 -30.37017 -29.11212 -27.33029 -27.04833 -25.09748 -24.81760 -24.25764 -22.67830 -21.48407 -20.45601 -19.97600 -19.19863 -18.78566 -18.22841 -18.12530 -17.17468 -16.99373 -16.60581 -16.44966 -16.19007 -15.69112 -15.56112 -15.50234 -15.41885 -14.93380 -14.74165 -14.62378 -14.49506 -14.46394 -14.27990 -14.02085 -13.83656 -13.30108 -13.03689 -12.89434 -12.84726 -12.82008 -12.75827 -12.54731 -12.32279 -12.26072 -12.08282 -12.04876 -11.83994 -11.62541 -11.42509 -11.26139 -11.03795 -10.66036 -10.46986 -9.74924 -9.61825 -9.00675 -7.99927 -5.28376 1.22363 1.40227 1.44570 1.51094 1.58026 1.66621 2.05849 2.52729 2.71961 3.25932 3.32233 3.44314 3.72417 3.73624 3.78744 3.88966 4.00821 4.05787 4.07800 4.10572 4.17865 4.22288 4.28955 4.34396 4.38823 4.47107 4.52610 4.62065 4.66422 4.69169 4.76573 4.79268 4.87708 4.88619 5.04901 5.07335 5.08404 5.17761 5.22921 5.25528 5.36935 5.40879 5.51532 5.63975 5.71018 6.18676 6.22503 6.43099 6.86044 7.18520 7.28663 8.02696 8.30822 9.23392 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008321 B = 0.004167 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.190884 B = 6718.290922 C = 9334.532065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.083 0.917 4 C -0.125 4.125 5 C 0.101 3.899 6 N -0.603 5.603 7 C 0.483 3.517 8 O -0.565 6.565 9 C 0.097 3.903 10 N -0.589 5.589 11 C 0.080 3.920 12 C 0.039 3.961 13 O -0.373 6.373 14 C 0.056 3.944 15 C 0.483 3.517 16 O -0.585 6.585 17 C 0.151 3.849 18 H 0.073 0.927 19 C 0.178 3.822 20 N -0.745 5.745 21 C -0.247 4.247 22 H 0.059 0.941 23 C -0.069 4.069 24 N -0.966 5.966 25 Si 0.974 3.026 26 H -0.277 1.277 27 H -0.285 1.285 28 H -0.283 1.283 29 C -0.112 4.112 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.156 0.844 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.150 0.850 43 H 0.091 0.909 44 H 0.148 0.852 45 H -0.014 1.014 46 H 0.036 0.964 47 H 0.374 0.626 48 H 0.254 0.746 49 H 0.054 0.946 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.302 -2.387 -25.917 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 H 0.101 0.899 4 C -0.163 4.163 5 C -0.020 4.020 6 N -0.337 5.337 7 C 0.271 3.729 8 O -0.443 6.443 9 C -0.029 4.029 10 N -0.321 5.321 11 C -0.042 4.042 12 C -0.038 4.038 13 O -0.291 6.291 14 C -0.023 4.023 15 C 0.272 3.728 16 O -0.466 6.466 17 C 0.047 3.953 18 H 0.091 0.909 19 C 0.052 3.948 20 N -0.390 5.390 21 C -0.379 4.379 22 H 0.077 0.923 23 C -0.262 4.262 24 N -0.616 5.616 25 Si 0.802 3.198 26 H -0.204 1.204 27 H -0.211 1.211 28 H -0.209 1.209 29 C -0.151 4.151 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.174 0.826 39 H 0.129 0.871 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.168 0.832 43 H 0.109 0.891 44 H 0.166 0.834 45 H 0.004 0.996 46 H 0.053 0.947 47 H 0.207 0.793 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.216 -2.943 -25.434 26.890 hybrid contribution -0.589 0.007 1.966 2.052 sum 7.627 -2.937 -23.468 24.851 Atomic orbital electron populations 1.21787 0.94402 1.01526 1.02320 1.21135 0.96365 0.99652 0.93430 0.89888 1.21997 0.94888 1.00981 0.98449 1.22185 0.94740 1.01076 0.84018 1.48280 1.42667 1.35198 1.07589 1.21877 0.78965 0.79556 0.92503 1.90787 1.55678 1.63602 1.34242 1.21588 0.96026 0.91542 0.93742 1.47268 1.08334 1.07288 1.69177 1.22484 0.77619 1.00227 1.03862 1.23253 1.01924 0.81472 0.97139 1.88164 1.27498 1.37109 1.76326 1.22811 0.80548 0.95562 1.03391 1.21567 0.89902 0.85703 0.75660 1.90718 1.18336 1.84343 1.53158 1.21102 0.94324 0.96737 0.83108 0.90882 1.21050 0.96345 0.92949 0.84436 1.42726 1.52764 1.42123 1.01398 1.19434 1.19777 1.13093 0.85627 0.92343 1.25526 1.00198 0.99549 1.00905 1.69794 1.35303 1.29668 1.26849 0.85213 0.77824 0.77542 0.79187 1.20352 1.21055 1.20905 1.21802 0.93832 1.00092 0.99386 0.93641 0.93724 0.90051 0.86961 0.92778 0.88652 0.86642 0.86677 0.82631 0.87067 0.89139 0.93169 0.83198 0.89144 0.83427 0.99564 0.94655 0.79326 0.93739 0.92731 0.94364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.19 71.98 0.66 -2.40 16 2 C -0.09 -2.00 2.68 -10.77 -0.03 -2.03 16 3 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.13 -2.08 5.36 30.67 0.16 -1.92 16 5 C 0.10 1.56 6.35 86.36 0.55 2.11 16 6 N -0.60 -16.69 2.98 -795.81 -2.37 -19.06 16 7 C 0.48 14.80 7.59 87.66 0.67 15.47 16 8 O -0.56 -23.49 11.99 -3.01 -0.04 -23.52 16 9 C 0.10 1.96 4.15 85.63 0.36 2.32 16 10 N -0.59 -13.11 2.32 -828.64 -1.92 -15.03 16 11 C 0.08 1.15 6.63 86.52 0.57 1.73 16 12 C 0.04 0.58 6.91 72.05 0.50 1.07 16 13 O -0.37 -6.84 10.85 -148.98 -1.62 -8.46 16 14 C 0.06 1.17 6.98 71.12 0.50 1.67 16 15 C 0.48 13.26 7.58 87.68 0.66 13.92 16 16 O -0.58 -20.85 16.36 -3.01 -0.05 -20.90 16 17 C 0.15 5.53 3.09 44.83 0.14 5.66 16 18 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 19 C 0.18 8.82 4.14 86.38 0.36 9.18 16 20 N -0.74 -42.81 5.38 -343.44 -1.85 -44.65 16 21 C -0.25 -15.52 9.99 84.04 0.84 -14.68 16 22 H 0.06 3.69 7.83 -2.91 -0.02 3.67 16 23 C -0.07 -4.27 5.50 84.87 0.47 -3.81 16 24 N -0.97 -61.65 13.06 21.65 0.28 -61.36 16 25 Si 0.97 49.34 29.55 68.60 2.03 51.37 16 26 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 29 C -0.11 -3.88 4.35 30.53 0.13 -3.75 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.12 1.02 5.93 -2.39 -0.01 1.00 16 37 H 0.12 2.40 7.01 -2.39 -0.02 2.38 16 38 H 0.16 1.49 7.61 -2.39 -0.02 1.48 16 39 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 1.31 8.13 -2.39 -0.02 1.29 16 41 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 42 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.15 2.46 8.14 -2.39 -0.02 2.45 16 45 H -0.01 -0.76 7.26 -2.39 -0.02 -0.78 16 46 H 0.04 1.90 6.21 -2.39 -0.01 1.89 16 47 H 0.37 21.81 6.35 -92.71 -0.59 21.22 16 48 H 0.25 15.54 8.31 -92.70 -0.77 14.77 16 49 H 0.05 2.19 6.88 -2.39 -0.02 2.18 16 50 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -89.13 389.76 1.35 -87.78 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.35 Total: 29.29 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 6.53 Total: 24.55 kcal Atomic # 7 Polarization: -134.25 SS G_CDS: -5.86 Total: -140.11 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -1.70 Total: -52.88 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.03 Total: 51.37 kcal Total: -89.13 1.35 -87.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707160405.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.613 kcal (2) G-P(sol) polarization free energy of solvation -89.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds