Wall clock time and date at job start Tue Mar 31 2020 23:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.57491 * 2 1 4 4 C 1.53089 * 109.52200 * 239.84142 * 2 1 3 5 5 O 1.42908 * 109.41412 * 182.48524 * 4 2 1 6 6 C 1.42899 * 114.09661 * 61.16511 * 5 4 2 7 7 C 1.53095 * 109.41405 * 298.84207 * 6 5 4 8 8 C 1.53173 * 109.16451 * 57.60620 * 7 6 5 9 9 H 1.09007 * 109.54469 * 183.06517 * 8 7 6 10 10 C 1.50699 * 109.54275 * 62.89014 * 8 7 6 11 11 O 1.21280 * 120.00167 * 261.86834 * 10 8 7 12 12 N 1.34772 * 120.00184 * 81.87283 * 10 8 7 13 13 C 1.46499 * 120.00443 * 179.97438 * 12 10 8 14 14 H 1.09002 * 112.90628 * 23.74619 * 13 12 10 15 15 C 1.53775 * 113.61712 * 154.99874 * 13 12 10 16 16 C 1.53785 * 87.08229 * 139.98346 * 15 13 12 17 17 H 1.09001 * 113.61297 * 89.20042 * 16 15 13 18 18 N 1.46895 * 113.61183 * 220.01578 * 16 15 13 19 19 C 1.46904 * 110.99865 * 204.99356 * 18 16 15 20 20 C 1.50702 * 109.47086 * 180.02562 * 19 18 16 21 21 O 1.21293 * 119.99883 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99714 * 180.02562 * 20 19 18 23 23 C 1.37099 * 119.99547 * 179.97438 * 22 20 19 24 24 H 1.08000 * 120.00202 * 0.02562 * 23 22 20 25 25 C 1.38954 * 119.99927 * 179.97438 * 23 22 20 26 26 N 1.31417 * 119.99743 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00143 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.46921 * 60.00514 * 27 25 23 29 29 H 1.48500 * 109.47302 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47321 * 300.00985 * 27 25 23 31 31 C 1.53776 * 87.07982 * 334.56955 * 16 15 13 32 32 H 1.09000 * 109.47579 * 303.18930 * 1 2 3 33 33 H 1.08999 * 109.47005 * 63.18658 * 1 2 3 34 34 H 1.09003 * 109.47700 * 183.18616 * 1 2 3 35 35 H 1.09004 * 109.48217 * 62.50951 * 4 2 1 36 36 H 1.08994 * 109.49462 * 302.47802 * 4 2 1 37 37 H 1.08991 * 109.48422 * 178.85923 * 6 5 4 38 38 H 1.09001 * 109.48195 * 58.81823 * 6 5 4 39 39 H 1.09011 * 109.51909 * 297.70322 * 7 6 5 40 40 H 1.08999 * 109.57698 * 177.54882 * 7 6 5 41 41 H 0.96998 * 120.00165 * 359.97438 * 12 10 8 42 42 H 1.09002 * 113.61851 * 25.43449 * 15 13 12 43 43 H 1.09000 * 113.61354 * 254.52955 * 15 13 12 44 44 H 1.00889 * 111.00819 * 328.95842 * 18 16 15 45 45 H 1.08997 * 109.47734 * 300.00762 * 19 18 16 46 46 H 1.09004 * 109.46808 * 60.01121 * 19 18 16 47 47 H 0.96998 * 120.00403 * 0.02562 * 22 20 19 48 48 H 0.97000 * 119.99237 * 179.97438 * 26 25 23 49 49 H 1.08993 * 113.61842 * 139.98442 * 31 16 15 50 50 H 1.09001 * 113.61505 * 270.88291 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0269 0.0000 4 6 2.0415 -0.7249 -1.2476 5 8 3.4694 -0.7743 -1.2163 6 6 4.0043 -1.4817 -0.0958 7 6 3.5715 -0.7873 1.1982 8 6 2.0418 -0.7254 1.2483 9 1 1.7278 -0.1840 2.1407 10 6 1.4816 -2.1240 1.2839 11 8 1.0838 -2.6441 0.2631 12 7 1.4226 -2.7967 2.4502 13 6 0.8774 -4.1561 2.4851 14 1 0.9380 -4.6623 1.5216 15 6 1.4020 -5.0003 3.6585 16 6 -0.0269 -5.5514 3.7981 17 1 -0.2131 -6.4399 3.1947 18 7 -0.4642 -5.7065 5.1919 19 6 -1.5106 -6.7313 5.3044 20 6 -1.9334 -6.8615 6.7450 21 8 -1.4143 -6.1684 7.5944 22 7 -2.8882 -7.7481 7.0896 23 6 -3.2724 -7.8669 8.4003 24 1 -2.8103 -7.2498 9.1566 25 6 -4.2572 -8.7806 8.7555 26 7 -4.8199 -9.5311 7.8352 27 14 -4.7813 -8.9420 10.5412 28 1 -5.3099 -7.6400 11.0215 29 1 -5.8387 -9.9784 10.6551 30 1 -3.6115 -9.3361 11.3667 31 6 -0.5098 -4.2469 3.1424 32 1 -0.3634 0.5625 0.8600 33 1 -0.3633 0.4636 -0.9172 34 1 -0.3634 -1.0261 0.0571 35 1 1.7159 -0.1885 -2.1389 36 1 1.6431 -1.7392 -1.2679 37 1 5.0924 -1.4905 -0.1571 38 1 3.6314 -2.5059 -0.1008 39 1 3.9780 0.2239 1.2224 40 1 3.9416 -1.3493 2.0557 41 1 1.7410 -2.3809 3.2667 42 1 1.7264 -4.4064 4.5130 43 1 2.1331 -5.7526 3.3626 44 1 0.3166 -5.9192 5.7943 45 1 -2.3694 -6.4418 4.6988 46 1 -1.1227 -7.6869 4.9515 47 1 -3.3031 -8.3026 6.4104 48 1 -5.5071 -10.1692 8.0833 49 1 -1.3220 -4.3909 2.4300 50 1 -0.7081 -3.4470 3.8558 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713200306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:28 Heat of formation + Delta-G solvation = -102.939876 kcal Electronic energy + Delta-G solvation = -29398.112667 eV Core-core repulsion = 25232.572168 eV Total energy + Delta-G solvation = -4165.540499 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24797 -39.57249 -38.28073 -37.78908 -34.77593 -34.60906 -33.91790 -32.97123 -32.05024 -31.20519 -27.51755 -26.89843 -26.00670 -25.78124 -24.36268 -23.16770 -22.71363 -21.43791 -20.47821 -19.59266 -19.09929 -17.89535 -17.28348 -16.74159 -16.44687 -16.39623 -15.94598 -15.62514 -15.36449 -15.21661 -14.82172 -14.65073 -14.47196 -14.11541 -13.96531 -13.57569 -13.41662 -13.32077 -12.91369 -12.75985 -12.58200 -12.52258 -12.35308 -12.13596 -11.84392 -11.76049 -11.57454 -11.42618 -11.28158 -11.05479 -11.02410 -10.98749 -10.86142 -10.66241 -10.45715 -10.22851 -9.99588 -9.51831 -9.36423 -9.21972 -8.47504 -8.11355 -7.97889 -6.43242 -3.84251 2.29004 2.85767 3.18714 3.24604 3.28880 3.62337 3.88942 4.09029 4.12884 4.23113 4.29885 4.34276 4.40784 4.43217 4.54003 4.71421 4.79162 4.84881 4.89488 5.05752 5.13402 5.17731 5.22772 5.24218 5.29242 5.33790 5.37844 5.46431 5.51814 5.54974 5.61448 5.63648 5.75010 5.75624 5.79563 5.87424 5.92584 5.96370 6.02007 6.12054 6.26346 6.39640 6.94549 7.18740 7.24817 7.53348 7.61639 7.94341 8.04298 8.59383 9.15944 9.52484 10.03776 10.74355 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032393 B = 0.001632 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.167788 B =17150.653244 C =17295.305552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 H 0.081 0.919 4 C 0.043 3.957 5 O -0.384 6.384 6 C 0.059 3.941 7 C -0.145 4.145 8 C -0.109 4.109 9 H 0.096 0.904 10 C 0.521 3.479 11 O -0.534 6.534 12 N -0.714 5.714 13 C 0.121 3.879 14 H 0.114 0.886 15 C -0.148 4.148 16 C 0.062 3.938 17 H 0.075 0.925 18 N -0.654 5.654 19 C 0.049 3.951 20 C 0.440 3.560 21 O -0.585 6.585 22 N -0.563 5.563 23 C -0.301 4.301 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.932 3.068 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.274 1.274 31 C -0.136 4.136 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.402 0.598 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.350 0.650 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.068 0.932 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.356 15.546 -16.991 27.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.123 4.123 3 H 0.100 0.900 4 C -0.033 4.033 5 O -0.303 6.303 6 C -0.018 4.018 7 C -0.183 4.183 8 C -0.131 4.131 9 H 0.115 0.885 10 C 0.308 3.692 11 O -0.412 6.412 12 N -0.364 5.364 13 C 0.015 3.985 14 H 0.132 0.868 15 C -0.187 4.187 16 C -0.049 4.049 17 H 0.093 0.907 18 N -0.287 5.287 19 C -0.083 4.083 20 C 0.225 3.775 21 O -0.469 6.469 22 N -0.200 5.200 23 C -0.430 4.430 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.759 3.241 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 C -0.176 4.176 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.236 0.764 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.171 0.829 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.927 16.070 -17.286 27.926 hybrid contribution -0.213 -1.173 1.120 1.636 sum 14.714 14.897 -16.166 26.453 Atomic orbital electron populations 1.21879 0.93977 1.03434 1.01870 1.21559 0.96845 0.99506 0.94388 0.90043 1.23186 0.80364 1.03193 0.96558 1.87887 1.21128 1.76165 1.45130 1.22543 0.98963 0.95012 0.85316 1.22161 0.93327 1.03241 0.99548 1.21476 0.96736 0.93759 1.01118 0.88535 1.20604 0.77605 0.87580 0.83406 1.90566 1.48223 1.69663 1.32733 1.46068 1.63780 1.16281 1.10270 1.22399 0.94804 0.82056 0.99198 0.86816 1.23622 0.97151 0.99509 0.98438 1.22798 0.94286 0.97046 0.90778 0.90698 1.60197 1.14591 1.48612 1.05270 1.21743 0.96198 0.93348 0.97044 1.19817 0.84071 0.84134 0.89428 1.90516 1.57938 1.47070 1.51406 1.41864 1.33991 1.34421 1.09681 1.19655 1.18635 1.20039 0.84695 0.87976 1.25274 0.96632 0.96093 0.99954 1.69608 1.27179 1.23914 1.33565 0.85907 0.78249 0.78028 0.81966 1.19880 1.20965 1.19926 1.23565 0.96256 0.98612 0.99155 0.92653 0.92269 0.91027 0.89634 0.88627 0.88864 0.92962 0.89755 0.90318 0.76381 0.88712 0.90825 0.82923 0.89595 0.93786 0.77440 0.91800 0.91353 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.93 37.16 0.33 -0.89 16 2 C -0.10 -0.81 2.67 -90.48 -0.24 -1.05 16 3 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.04 0.40 5.83 37.20 0.22 0.62 16 5 O -0.38 -3.93 10.77 -35.23 -0.38 -4.31 16 6 C 0.06 0.47 6.60 37.21 0.25 0.71 16 7 C -0.14 -0.87 5.62 -26.59 -0.15 -1.02 16 8 C -0.11 -0.76 2.61 -91.59 -0.24 -1.00 16 9 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 10 C 0.52 4.70 5.21 -10.99 -0.06 4.64 16 11 O -0.53 -6.39 11.18 5.56 0.06 -6.33 16 12 N -0.71 -5.59 5.35 -53.02 -0.28 -5.87 16 13 C 0.12 1.10 4.24 -67.12 -0.28 0.82 16 14 H 0.11 1.15 7.47 -51.93 -0.39 0.77 16 15 C -0.15 -1.31 7.40 -25.92 -0.19 -1.50 16 16 C 0.06 0.71 4.14 -66.90 -0.28 0.43 16 17 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 18 N -0.65 -9.98 6.18 -107.13 -0.66 -10.64 16 19 C 0.05 0.85 6.01 -4.97 -0.03 0.82 16 20 C 0.44 10.29 7.82 -10.98 -0.09 10.20 16 21 O -0.58 -15.70 15.78 5.55 0.09 -15.62 16 22 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 23 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 24 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 25 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 26 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 27 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 31 C -0.14 -1.48 7.68 -25.92 -0.20 -1.68 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.71 6.01 -51.93 -0.31 0.40 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 1.08 5.19 -51.93 -0.27 0.81 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.48 7.13 -51.93 -0.37 0.11 16 39 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.40 2.34 8.73 -40.82 -0.36 1.98 16 42 H 0.09 0.81 8.12 -51.93 -0.42 0.39 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.35 5.47 8.25 -39.30 -0.32 5.14 16 45 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 47 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 396.38 15.07 5.97 5.97 Total: -1.00 -32.60 396.38 -8.94 -41.54 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -8.18 Total: 14.24 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.20 Total: 3.08 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.28 Total: -54.53 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.23 Total: -26.26 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.60 -8.94 -41.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713200306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.398 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds