Wall clock time and date at job start Tue Mar 31 2020 23:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.57491 * 2 1 4 4 C 1.53089 * 109.52200 * 239.84142 * 2 1 3 5 5 O 1.42908 * 109.41412 * 182.48524 * 4 2 1 6 6 C 1.42899 * 114.09661 * 61.16511 * 5 4 2 7 7 C 1.53095 * 109.41405 * 298.84207 * 6 5 4 8 8 C 1.53173 * 109.16451 * 57.60620 * 7 6 5 9 9 H 1.09007 * 109.54469 * 183.06517 * 8 7 6 10 10 C 1.50699 * 109.54275 * 62.89014 * 8 7 6 11 11 O 1.21280 * 120.00167 * 261.86834 * 10 8 7 12 12 N 1.34772 * 120.00184 * 81.87283 * 10 8 7 13 13 C 1.46499 * 120.00443 * 179.97438 * 12 10 8 14 14 H 1.09002 * 112.90628 * 23.74619 * 13 12 10 15 15 C 1.53775 * 113.61712 * 154.99874 * 13 12 10 16 16 C 1.53785 * 87.08229 * 139.98346 * 15 13 12 17 17 H 1.09001 * 113.61297 * 89.20042 * 16 15 13 18 18 N 1.46895 * 113.61183 * 220.01578 * 16 15 13 19 19 C 1.46904 * 110.99865 * 204.99356 * 18 16 15 20 20 C 1.50702 * 109.47086 * 180.02562 * 19 18 16 21 21 O 1.21293 * 119.99883 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99714 * 180.02562 * 20 19 18 23 23 C 1.37099 * 119.99547 * 179.97438 * 22 20 19 24 24 H 1.08000 * 120.00202 * 0.02562 * 23 22 20 25 25 C 1.38954 * 119.99927 * 179.97438 * 23 22 20 26 26 N 1.31417 * 119.99743 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00143 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.46921 * 60.00514 * 27 25 23 29 29 H 1.48500 * 109.47302 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47321 * 300.00985 * 27 25 23 31 31 C 1.53776 * 87.07982 * 334.56955 * 16 15 13 32 32 H 1.09000 * 109.47579 * 303.18930 * 1 2 3 33 33 H 1.08999 * 109.47005 * 63.18658 * 1 2 3 34 34 H 1.09003 * 109.47700 * 183.18616 * 1 2 3 35 35 H 1.09004 * 109.48217 * 62.50951 * 4 2 1 36 36 H 1.08994 * 109.49462 * 302.47802 * 4 2 1 37 37 H 1.08991 * 109.48422 * 178.85923 * 6 5 4 38 38 H 1.09001 * 109.48195 * 58.81823 * 6 5 4 39 39 H 1.09011 * 109.51909 * 297.70322 * 7 6 5 40 40 H 1.08999 * 109.57698 * 177.54882 * 7 6 5 41 41 H 0.96998 * 120.00165 * 359.97438 * 12 10 8 42 42 H 1.09002 * 113.61851 * 25.43449 * 15 13 12 43 43 H 1.09000 * 113.61354 * 254.52955 * 15 13 12 44 44 H 1.00889 * 111.00819 * 328.95842 * 18 16 15 45 45 H 1.08997 * 109.47734 * 300.00762 * 19 18 16 46 46 H 1.09004 * 109.46808 * 60.01121 * 19 18 16 47 47 H 0.96998 * 120.00403 * 0.02562 * 22 20 19 48 48 H 0.97000 * 119.99237 * 179.97438 * 26 25 23 49 49 H 1.08993 * 113.61842 * 139.98442 * 31 16 15 50 50 H 1.09001 * 113.61505 * 270.88291 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0269 0.0000 4 6 2.0415 -0.7249 -1.2476 5 8 3.4694 -0.7743 -1.2163 6 6 4.0043 -1.4817 -0.0958 7 6 3.5715 -0.7873 1.1982 8 6 2.0418 -0.7254 1.2483 9 1 1.7278 -0.1840 2.1407 10 6 1.4816 -2.1240 1.2839 11 8 1.0838 -2.6441 0.2631 12 7 1.4226 -2.7967 2.4502 13 6 0.8774 -4.1561 2.4851 14 1 0.9380 -4.6623 1.5216 15 6 1.4020 -5.0003 3.6585 16 6 -0.0269 -5.5514 3.7981 17 1 -0.2131 -6.4399 3.1947 18 7 -0.4642 -5.7065 5.1919 19 6 -1.5106 -6.7313 5.3044 20 6 -1.9334 -6.8615 6.7450 21 8 -1.4143 -6.1684 7.5944 22 7 -2.8882 -7.7481 7.0896 23 6 -3.2724 -7.8669 8.4003 24 1 -2.8103 -7.2498 9.1566 25 6 -4.2572 -8.7806 8.7555 26 7 -4.8199 -9.5311 7.8352 27 14 -4.7813 -8.9420 10.5412 28 1 -5.3099 -7.6400 11.0215 29 1 -5.8387 -9.9784 10.6551 30 1 -3.6115 -9.3361 11.3667 31 6 -0.5098 -4.2469 3.1424 32 1 -0.3634 0.5625 0.8600 33 1 -0.3633 0.4636 -0.9172 34 1 -0.3634 -1.0261 0.0571 35 1 1.7159 -0.1885 -2.1389 36 1 1.6431 -1.7392 -1.2679 37 1 5.0924 -1.4905 -0.1571 38 1 3.6314 -2.5059 -0.1008 39 1 3.9780 0.2239 1.2224 40 1 3.9416 -1.3493 2.0557 41 1 1.7410 -2.3809 3.2667 42 1 1.7264 -4.4064 4.5130 43 1 2.1331 -5.7526 3.3626 44 1 0.3166 -5.9192 5.7943 45 1 -2.3694 -6.4418 4.6988 46 1 -1.1227 -7.6869 4.9515 47 1 -3.3031 -8.3026 6.4104 48 1 -5.5071 -10.1692 8.0833 49 1 -1.3220 -4.3909 2.4300 50 1 -0.7081 -3.4470 3.8558 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713200306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:27 Heat of formation + Delta-G solvation = -128.177415 kcal Electronic energy + Delta-G solvation = -29399.207049 eV Core-core repulsion = 25232.572168 eV Total energy + Delta-G solvation = -4166.634881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.92637 -40.52027 -39.88227 -38.69554 -36.14575 -35.49639 -35.28721 -33.91530 -33.24429 -32.73838 -28.59233 -27.95764 -26.78506 -26.68025 -25.93801 -24.10171 -23.31268 -22.19927 -21.31742 -21.04302 -20.20857 -19.87101 -18.08904 -17.73134 -17.27470 -17.09578 -17.01322 -16.85798 -16.49984 -16.24656 -16.15746 -15.79224 -15.51040 -15.32091 -15.10031 -14.70792 -14.51568 -14.22154 -14.00599 -13.55399 -13.50598 -13.37071 -13.34370 -13.21982 -13.05425 -12.92378 -12.86910 -12.47485 -12.44114 -12.22650 -12.14238 -12.01785 -11.91646 -11.60708 -11.55134 -11.51532 -11.48565 -10.65337 -10.34519 -10.07018 -10.02449 -9.95091 -9.32780 -8.47020 -5.96043 1.39723 1.41687 1.52731 1.61166 2.04565 2.18283 2.29705 2.97626 2.99642 3.20257 3.48303 3.53441 3.56671 3.66164 3.73868 3.76771 3.95820 3.97013 4.02431 4.17224 4.30298 4.31914 4.45199 4.49676 4.54156 4.57147 4.60560 4.68063 4.72135 4.77241 4.80686 4.84505 4.86993 4.96182 5.01867 5.08685 5.08808 5.12534 5.14445 5.26140 5.39391 5.40694 5.64841 5.92046 6.13857 6.28005 6.42889 6.58618 6.59547 7.11678 7.29490 7.55531 8.10368 8.70072 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032393 B = 0.001632 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.167788 B =17150.653244 C =17295.305552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 H 0.095 0.905 4 C 0.042 3.958 5 O -0.402 6.402 6 C 0.052 3.948 7 C -0.138 4.138 8 C -0.107 4.107 9 H 0.120 0.880 10 C 0.518 3.482 11 O -0.567 6.567 12 N -0.706 5.706 13 C 0.131 3.869 14 H 0.105 0.895 15 C -0.132 4.132 16 C 0.057 3.943 17 H 0.084 0.916 18 N -0.666 5.666 19 C 0.064 3.936 20 C 0.437 3.563 21 O -0.623 6.623 22 N -0.574 5.574 23 C -0.335 4.335 24 H 0.080 0.920 25 C -0.014 4.014 26 N -0.921 5.921 27 Si 0.994 3.006 28 H -0.272 1.272 29 H -0.271 1.271 30 H -0.271 1.271 31 C -0.137 4.137 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.034 0.966 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.414 0.586 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.348 0.652 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.060 0.940 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.300 16.306 -16.678 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.121 4.121 3 H 0.113 0.887 4 C -0.034 4.034 5 O -0.322 6.322 6 C -0.025 4.025 7 C -0.176 4.176 8 C -0.129 4.129 9 H 0.138 0.862 10 C 0.306 3.694 11 O -0.447 6.447 12 N -0.356 5.356 13 C 0.025 3.975 14 H 0.123 0.877 15 C -0.170 4.170 16 C -0.054 4.054 17 H 0.102 0.898 18 N -0.298 5.298 19 C -0.069 4.069 20 C 0.225 3.775 21 O -0.509 6.509 22 N -0.211 5.211 23 C -0.465 4.465 24 H 0.098 0.902 25 C -0.214 4.214 26 N -0.561 5.561 27 Si 0.818 3.182 28 H -0.197 1.197 29 H -0.195 1.195 30 H -0.196 1.196 31 C -0.177 4.177 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.127 0.873 38 H 0.052 0.948 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.251 0.749 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.168 0.832 45 H 0.116 0.884 46 H 0.086 0.914 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 15.881 16.834 -16.986 28.707 hybrid contribution -0.486 -1.390 0.947 1.750 sum 15.395 15.445 -16.039 27.070 Atomic orbital electron populations 1.21831 0.94257 1.02062 1.02630 1.21548 0.96545 1.00003 0.93987 0.88676 1.23141 0.80193 1.02239 0.97812 1.87855 1.21408 1.76438 1.46458 1.22701 0.99758 0.94152 0.85844 1.22157 0.92427 1.04064 0.98955 1.21535 0.97375 0.92322 1.01625 0.86215 1.21025 0.77042 0.88306 0.83009 1.90573 1.49622 1.70521 1.33955 1.45977 1.63261 1.15746 1.10649 1.22152 0.93742 0.82830 0.98778 0.87716 1.23523 0.95817 0.99467 0.98227 1.22931 0.96231 0.97575 0.88623 0.89786 1.60184 1.14300 1.47849 1.07504 1.21593 0.97463 0.95337 0.92465 1.20883 0.82524 0.82367 0.91720 1.90482 1.58868 1.48146 1.53421 1.41948 1.34820 1.35250 1.09060 1.19646 1.20066 1.21112 0.85641 0.90209 1.26068 0.96032 0.95238 1.04045 1.69673 1.27283 1.23998 1.35178 0.84973 0.78075 0.78183 0.77014 1.19740 1.19547 1.19584 1.23534 0.97144 0.98128 0.98866 0.91584 0.91808 0.93399 0.89270 0.90894 0.87329 0.94784 0.88376 0.88448 0.74941 0.88084 0.89335 0.83250 0.88381 0.91442 0.77015 0.91300 0.92106 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.93 71.98 0.64 -1.62 16 2 C -0.10 -1.45 2.67 -10.70 -0.03 -1.48 16 3 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 4 C 0.04 0.79 5.83 72.01 0.42 1.21 16 5 O -0.40 -8.02 10.77 -148.98 -1.60 -9.62 16 6 C 0.05 0.77 6.60 72.01 0.48 1.24 16 7 C -0.14 -1.32 5.62 30.68 0.17 -1.15 16 8 C -0.11 -1.28 2.61 -11.42 -0.03 -1.31 16 9 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 10 C 0.52 8.81 5.21 87.66 0.46 9.26 16 11 O -0.57 -13.71 11.18 -3.03 -0.03 -13.74 16 12 N -0.71 -9.90 5.35 -440.05 -2.36 -12.25 16 13 C 0.13 2.21 4.24 45.52 0.19 2.41 16 14 H 0.10 2.04 7.47 -2.39 -0.02 2.03 16 15 C -0.13 -2.04 7.40 31.12 0.23 -1.81 16 16 C 0.06 1.20 4.14 45.44 0.19 1.39 16 17 H 0.08 1.66 7.87 -2.39 -0.02 1.65 16 18 N -0.67 -19.56 6.18 -492.85 -3.05 -22.61 16 19 C 0.06 2.14 6.01 85.56 0.51 2.66 16 20 C 0.44 20.59 7.82 87.66 0.69 21.27 16 21 O -0.62 -33.97 15.78 -3.07 -0.05 -34.02 16 22 N -0.57 -29.36 5.29 -306.97 -1.62 -30.98 16 23 C -0.34 -18.98 9.68 84.04 0.81 -18.17 16 24 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 25 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 26 N -0.92 -49.65 13.05 21.67 0.28 -49.37 16 27 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 30 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 31 C -0.14 -2.86 7.68 31.12 0.24 -2.62 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.96 6.01 -2.39 -0.01 0.95 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.72 5.19 -2.39 -0.01 1.71 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.03 0.62 7.13 -2.39 -0.02 0.60 16 39 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.41 3.81 8.73 -92.71 -0.81 3.00 16 42 H 0.10 1.49 8.12 -2.39 -0.02 1.47 16 43 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 44 H 0.35 10.50 8.25 -89.70 -0.74 9.76 16 45 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 46 H 0.07 1.97 8.13 -2.38 -0.02 1.95 16 47 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 48 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 49 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -71.70 396.38 -2.27 -73.97 By element: Atomic # 1 Polarization: 44.18 SS G_CDS: -1.30 Total: 42.88 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 5.44 Total: 11.01 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -6.74 Total: -115.21 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -1.69 Total: -57.38 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -71.70 -2.27 -73.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713200306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.207 kcal (2) G-P(sol) polarization free energy of solvation -71.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds