Wall clock time and date at job start Tue Mar 31 2020 23:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.49233 * 2 1 4 4 C 1.53044 * 109.52424 * 239.92199 * 2 1 3 5 5 C 1.53046 * 109.53233 * 178.66333 * 4 2 1 6 6 C 1.53197 * 109.31188 * 61.36765 * 5 4 2 7 7 N 1.46918 * 108.77285 * 305.36303 * 6 5 4 8 8 C 1.34784 * 120.62529 * 233.61199 * 7 6 5 9 9 O 1.21287 * 119.99878 * 185.10834 * 8 7 6 10 10 C 1.50695 * 120.00262 * 5.10552 * 8 7 6 11 11 N 1.46502 * 109.47252 * 180.02562 * 10 8 7 12 12 C 1.46090 * 118.72366 * 269.73324 * 11 10 8 13 13 C 1.53209 * 109.82358 * 161.46754 * 12 11 10 14 14 O 1.43244 * 108.51265 * 49.53677 * 13 12 11 15 15 C 1.42961 * 112.98836 * 291.45993 * 14 13 12 16 16 C 1.33865 * 118.73364 * 89.99728 * 11 10 8 17 17 O 1.21288 * 118.83414 * 1.88732 * 16 11 10 18 18 C 1.46926 * 118.74292 * 53.60923 * 7 6 5 19 19 H 1.08997 * 109.70196 * 66.24914 * 18 7 6 20 20 C 1.53007 * 109.58462 * 186.60444 * 18 7 6 21 21 N 1.46499 * 109.47090 * 286.84087 * 20 18 7 22 22 C 1.36932 * 120.00186 * 185.39225 * 21 20 18 23 23 H 1.08007 * 119.99614 * 0.02562 * 22 21 20 24 24 C 1.38806 * 120.00336 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00126 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00183 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47216 * 89.99330 * 26 24 22 28 28 H 1.48493 * 109.47311 * 209.99946 * 26 24 22 29 29 H 1.48507 * 109.46880 * 329.99965 * 26 24 22 30 30 H 1.08999 * 109.47573 * 299.92977 * 1 2 3 31 31 H 1.09001 * 109.47103 * 59.93684 * 1 2 3 32 32 H 1.09008 * 109.46882 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.45985 * 298.68219 * 4 2 1 34 34 H 1.08999 * 109.46131 * 58.64587 * 4 2 1 35 35 H 1.09005 * 109.49285 * 181.31123 * 5 4 2 36 36 H 1.08992 * 109.50132 * 301.41187 * 5 4 2 37 37 H 1.08996 * 109.58418 * 65.14868 * 6 5 4 38 38 H 1.08998 * 109.58436 * 185.57012 * 6 5 4 39 39 H 1.09004 * 109.47103 * 300.00639 * 10 8 7 40 40 H 1.08998 * 109.47035 * 60.00015 * 10 8 7 41 41 H 1.09004 * 109.39797 * 281.77814 * 12 11 10 42 42 H 1.08999 * 109.39763 * 41.50056 * 12 11 10 43 43 H 1.09004 * 109.82969 * 289.74510 * 13 12 11 44 44 H 1.09001 * 109.67308 * 169.23898 * 13 12 11 45 45 H 1.09008 * 109.41576 * 289.49618 * 15 14 13 46 46 H 1.08997 * 109.41588 * 169.70311 * 15 14 13 47 47 H 1.08999 * 109.47197 * 46.84003 * 20 18 7 48 48 H 1.09000 * 109.46639 * 166.84197 * 20 18 7 49 49 H 0.97003 * 120.00043 * 5.39003 * 21 20 18 50 50 H 0.96996 * 120.00192 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0415 -0.7229 -1.2482 5 6 3.5716 -0.6940 -1.2654 6 6 4.1060 -1.4254 -0.0299 7 7 3.5046 -0.8281 1.1701 8 6 4.2807 -0.3844 2.1789 9 8 3.7718 0.0212 3.2023 10 6 5.7808 -0.3924 2.0351 11 7 6.3914 0.1337 3.2585 12 6 6.6489 1.5686 3.3537 13 6 6.8418 1.9656 4.8209 14 8 7.7886 1.0690 5.4140 15 6 7.2875 -0.2631 5.5487 16 6 6.6967 -0.7196 4.2437 17 8 6.4900 -1.9031 4.0775 18 6 2.0413 -0.7235 1.2497 19 1 1.6038 -1.7206 1.2995 20 6 1.6510 0.0708 2.4979 21 7 1.8711 -0.7528 3.6894 22 6 1.4878 -0.2920 4.9206 23 1 1.0227 0.6784 5.0132 24 6 1.6958 -1.0725 6.0494 25 7 1.3278 -0.6294 7.2329 26 14 2.4995 -2.7511 5.8892 27 1 3.9719 -2.6095 6.0199 28 1 1.9915 -3.6473 6.9587 29 1 2.1740 -3.3310 4.5613 30 1 -0.3634 0.5127 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0278 -0.0005 33 1 1.6979 -1.7573 -1.2351 34 1 1.6588 -0.2246 -2.1389 35 1 3.9346 -1.1886 -2.1663 36 1 3.9161 0.3400 -1.2534 37 1 3.8388 -2.4806 -0.0860 38 1 5.1902 -1.3227 0.0149 39 1 6.1243 -1.4132 1.8678 40 1 6.0679 0.2309 1.1883 41 1 7.5478 1.8134 2.7877 42 1 5.8022 2.1165 2.9404 43 1 5.8916 1.8968 5.3505 44 1 7.2194 2.9865 4.8782 45 1 6.5190 -0.2848 6.3215 46 1 8.1023 -0.9299 5.8306 47 1 2.2614 0.9716 2.5610 48 1 0.5987 0.3484 2.4375 49 1 2.2884 -1.6245 3.6061 50 1 1.4735 -1.1746 8.0218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715475822.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:50 Heat of formation + Delta-G solvation = -46.847633 kcal Electronic energy + Delta-G solvation = -32964.477072 eV Core-core repulsion = 28801.368915 eV Total energy + Delta-G solvation = -4163.108157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.85719 -39.99535 -37.65685 -37.28140 -35.39511 -34.57069 -33.53100 -32.14466 -30.65809 -30.28272 -29.16258 -27.32439 -26.14155 -25.72629 -23.99292 -23.64587 -22.18895 -21.07016 -20.34075 -19.33013 -18.69380 -17.63563 -17.56506 -16.93042 -16.67594 -15.79205 -15.62517 -15.40484 -15.05095 -14.71412 -14.64956 -14.40025 -14.09339 -13.95404 -13.65822 -13.44630 -13.21415 -13.11185 -12.93182 -12.77563 -12.69343 -12.41889 -12.13399 -11.84592 -11.72275 -11.67540 -11.60303 -11.28835 -11.15868 -11.08733 -10.72881 -10.67390 -10.62297 -10.45172 -10.13950 -9.86080 -9.39165 -9.36650 -9.10161 -8.66587 -8.33152 -8.14258 -6.77303 -5.53624 -2.79278 2.53947 2.86141 3.11315 3.32969 3.56065 3.61067 3.69028 3.73284 4.37513 4.58086 4.68739 4.72923 4.76284 4.83587 4.86479 4.93252 5.03695 5.04577 5.23070 5.23712 5.31199 5.36833 5.41513 5.46710 5.47835 5.59556 5.62460 5.65231 5.67407 5.73832 5.76432 5.80084 5.81796 5.85099 6.00087 6.05591 6.19324 6.22099 6.28248 6.42586 6.55648 6.75107 6.83631 7.13906 7.38119 7.76492 8.16296 8.21105 8.64640 8.75306 9.47254 10.21665 10.42980 11.66057 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008854 B = 0.006187 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.602231 B = 4524.896021 C = 6485.919842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.133 4.133 6 C 0.110 3.890 7 N -0.617 5.617 8 C 0.456 3.544 9 O -0.437 6.437 10 C 0.093 3.907 11 N -0.586 5.586 12 C 0.089 3.911 13 C 0.042 3.958 14 O -0.374 6.374 15 C 0.051 3.949 16 C 0.498 3.502 17 O -0.537 6.537 18 C 0.143 3.857 19 H 0.067 0.933 20 C 0.169 3.831 21 N -0.721 5.721 22 C -0.208 4.208 23 H 0.084 0.916 24 C -0.003 4.003 25 N -0.945 5.945 26 Si 0.883 3.117 27 H -0.283 1.283 28 H -0.298 1.298 29 H -0.286 1.286 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.097 0.903 46 H 0.128 0.872 47 H 0.037 0.963 48 H 0.028 0.972 49 H 0.357 0.643 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.759 4.455 -18.823 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.172 4.172 6 C -0.014 4.014 7 N -0.355 5.355 8 C 0.239 3.761 9 O -0.305 6.305 10 C -0.034 4.034 11 N -0.319 5.319 12 C -0.035 4.035 13 C -0.035 4.035 14 O -0.292 6.292 15 C -0.028 4.028 16 C 0.286 3.714 17 O -0.414 6.414 18 C 0.039 3.961 19 H 0.085 0.915 20 C 0.042 3.958 21 N -0.366 5.366 22 C -0.338 4.338 23 H 0.102 0.898 24 C -0.196 4.196 25 N -0.596 5.596 26 Si 0.715 3.285 27 H -0.210 1.210 28 H -0.225 1.225 29 H -0.213 1.213 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.131 0.869 45 H 0.115 0.885 46 H 0.146 0.854 47 H 0.055 0.945 48 H 0.045 0.955 49 H 0.190 0.810 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.502 4.288 -18.028 21.300 hybrid contribution 0.325 -1.383 -0.294 1.450 sum 10.826 2.906 -18.322 21.479 Atomic orbital electron populations 1.21860 0.94342 1.02172 1.02137 1.21446 0.96121 0.99875 0.94211 0.90872 1.21576 0.94957 1.00907 0.97654 1.21919 0.96514 1.01186 0.97540 1.21634 0.97768 0.97216 0.84781 1.47995 1.06292 1.62945 1.18290 1.21072 0.89057 0.81708 0.84229 1.91242 1.72082 1.41285 1.25895 1.21382 0.92040 1.02381 0.87551 1.46979 1.60546 1.07814 1.16609 1.22138 1.01779 0.80670 0.98865 1.23062 0.94641 0.94411 0.91426 1.88116 1.40056 1.18719 1.82325 1.22819 1.01390 0.84476 0.94121 1.20912 0.78115 0.86350 0.86052 1.90736 1.54065 1.16618 1.80019 1.21569 0.78961 0.99592 0.95938 0.91528 1.20810 0.96701 0.94240 0.84020 1.42549 1.72767 1.18120 1.03132 1.18956 1.30104 1.01824 0.82948 0.89845 1.24503 1.01902 0.98026 0.95216 1.69708 1.54650 1.37803 0.97439 0.86567 0.80065 0.85875 0.76029 1.20975 1.22455 1.21266 0.91434 0.92800 0.92606 0.91858 0.91852 0.91068 0.91580 0.91717 0.90358 0.87642 0.88374 0.90977 0.89576 0.90632 0.86858 0.88534 0.85445 0.94510 0.95466 0.81045 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.99 37.16 0.33 -1.36 16 2 C -0.10 -1.16 2.34 -90.50 -0.21 -1.37 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.11 -1.06 5.17 -26.68 -0.14 -1.20 16 5 C -0.13 -1.11 6.08 -26.61 -0.16 -1.27 16 6 C 0.11 1.14 6.35 -3.71 -0.02 1.11 16 7 N -0.62 -9.14 2.97 -165.22 -0.49 -9.63 16 8 C 0.46 7.92 7.37 -10.98 -0.08 7.84 16 9 O -0.44 -9.77 10.15 5.55 0.06 -9.71 16 10 C 0.09 1.29 4.15 -5.19 -0.02 1.27 16 11 N -0.59 -8.88 2.32 -175.67 -0.41 -9.28 16 12 C 0.09 1.02 6.63 -4.15 -0.03 1.00 16 13 C 0.04 0.50 6.91 37.27 0.26 0.76 16 14 O -0.37 -5.13 10.85 -35.23 -0.38 -5.51 16 15 C 0.05 0.78 6.98 35.83 0.25 1.03 16 16 C 0.50 8.95 7.58 -11.56 -0.09 8.87 16 17 O -0.54 -11.66 16.36 5.55 0.09 -11.56 16 18 C 0.14 2.28 2.37 -67.60 -0.16 2.12 16 19 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 20 C 0.17 3.50 4.85 -4.04 -0.02 3.48 16 21 N -0.72 -18.68 3.00 -59.91 -0.18 -18.86 16 22 C -0.21 -6.31 10.22 -15.06 -0.15 -6.47 16 23 H 0.08 2.70 8.06 -52.48 -0.42 2.28 16 24 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 25 N -0.95 -31.56 13.97 55.49 0.78 -30.79 16 26 Si 0.88 25.27 27.74 -169.99 -4.71 20.55 16 27 H -0.28 -8.37 7.11 56.52 0.40 -7.97 16 28 H -0.30 -8.48 7.11 56.52 0.40 -8.08 16 29 H -0.29 -7.93 6.52 56.52 0.37 -7.57 16 30 H 0.07 0.88 6.37 -51.93 -0.33 0.55 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.67 5.93 -51.93 -0.31 0.36 16 39 H 0.11 1.50 6.82 -51.93 -0.35 1.14 16 40 H 0.10 0.95 7.79 -51.93 -0.40 0.55 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.97 8.13 -51.93 -0.42 0.55 16 43 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 44 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16 46 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 47 H 0.04 0.82 6.36 -51.93 -0.33 0.49 16 48 H 0.03 0.57 6.14 -51.93 -0.32 0.25 16 49 H 0.36 9.60 5.08 -40.82 -0.21 9.40 16 50 H 0.25 8.15 8.31 -40.82 -0.34 7.81 16 LS Contribution 382.51 15.07 5.76 5.76 Total: -1.00 -39.61 382.51 -8.01 -47.62 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -8.18 Total: 5.79 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: -0.34 Total: 15.63 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -0.30 Total: -68.56 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.24 Total: -26.79 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -4.71 Total: 20.55 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.61 -8.01 -47.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715475822.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.771 kcal (2) G-P(sol) polarization free energy of solvation -39.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds