Wall clock time and date at job start Tue Mar 31 2020 23:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.49233 * 2 1 4 4 C 1.53044 * 109.52424 * 239.92199 * 2 1 3 5 5 C 1.53046 * 109.53233 * 178.66333 * 4 2 1 6 6 C 1.53197 * 109.31188 * 61.36765 * 5 4 2 7 7 N 1.46918 * 108.77285 * 305.36303 * 6 5 4 8 8 C 1.34784 * 120.62529 * 233.61199 * 7 6 5 9 9 O 1.21287 * 119.99878 * 185.10834 * 8 7 6 10 10 C 1.50695 * 120.00262 * 5.10552 * 8 7 6 11 11 N 1.46502 * 109.47252 * 180.02562 * 10 8 7 12 12 C 1.46090 * 118.72366 * 269.73324 * 11 10 8 13 13 C 1.53209 * 109.82358 * 161.46754 * 12 11 10 14 14 O 1.43244 * 108.51265 * 49.53677 * 13 12 11 15 15 C 1.42961 * 112.98836 * 291.45993 * 14 13 12 16 16 C 1.33865 * 118.73364 * 89.99728 * 11 10 8 17 17 O 1.21288 * 118.83414 * 1.88732 * 16 11 10 18 18 C 1.46926 * 118.74292 * 53.60923 * 7 6 5 19 19 H 1.08997 * 109.70196 * 66.24914 * 18 7 6 20 20 C 1.53007 * 109.58462 * 186.60444 * 18 7 6 21 21 N 1.46499 * 109.47090 * 286.84087 * 20 18 7 22 22 C 1.36932 * 120.00186 * 185.39225 * 21 20 18 23 23 H 1.08007 * 119.99614 * 0.02562 * 22 21 20 24 24 C 1.38806 * 120.00336 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00126 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00183 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47216 * 89.99330 * 26 24 22 28 28 H 1.48493 * 109.47311 * 209.99946 * 26 24 22 29 29 H 1.48507 * 109.46880 * 329.99965 * 26 24 22 30 30 H 1.08999 * 109.47573 * 299.92977 * 1 2 3 31 31 H 1.09001 * 109.47103 * 59.93684 * 1 2 3 32 32 H 1.09008 * 109.46882 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.45985 * 298.68219 * 4 2 1 34 34 H 1.08999 * 109.46131 * 58.64587 * 4 2 1 35 35 H 1.09005 * 109.49285 * 181.31123 * 5 4 2 36 36 H 1.08992 * 109.50132 * 301.41187 * 5 4 2 37 37 H 1.08996 * 109.58418 * 65.14868 * 6 5 4 38 38 H 1.08998 * 109.58436 * 185.57012 * 6 5 4 39 39 H 1.09004 * 109.47103 * 300.00639 * 10 8 7 40 40 H 1.08998 * 109.47035 * 60.00015 * 10 8 7 41 41 H 1.09004 * 109.39797 * 281.77814 * 12 11 10 42 42 H 1.08999 * 109.39763 * 41.50056 * 12 11 10 43 43 H 1.09004 * 109.82969 * 289.74510 * 13 12 11 44 44 H 1.09001 * 109.67308 * 169.23898 * 13 12 11 45 45 H 1.09008 * 109.41576 * 289.49618 * 15 14 13 46 46 H 1.08997 * 109.41588 * 169.70311 * 15 14 13 47 47 H 1.08999 * 109.47197 * 46.84003 * 20 18 7 48 48 H 1.09000 * 109.46639 * 166.84197 * 20 18 7 49 49 H 0.97003 * 120.00043 * 5.39003 * 21 20 18 50 50 H 0.96996 * 120.00192 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0415 -0.7229 -1.2482 5 6 3.5716 -0.6940 -1.2654 6 6 4.1060 -1.4254 -0.0299 7 7 3.5046 -0.8281 1.1701 8 6 4.2807 -0.3844 2.1789 9 8 3.7718 0.0212 3.2023 10 6 5.7808 -0.3924 2.0351 11 7 6.3914 0.1337 3.2585 12 6 6.6489 1.5686 3.3537 13 6 6.8418 1.9656 4.8209 14 8 7.7886 1.0690 5.4140 15 6 7.2875 -0.2631 5.5487 16 6 6.6967 -0.7196 4.2437 17 8 6.4900 -1.9031 4.0775 18 6 2.0413 -0.7235 1.2497 19 1 1.6038 -1.7206 1.2995 20 6 1.6510 0.0708 2.4979 21 7 1.8711 -0.7528 3.6894 22 6 1.4878 -0.2920 4.9206 23 1 1.0227 0.6784 5.0132 24 6 1.6958 -1.0725 6.0494 25 7 1.3278 -0.6294 7.2329 26 14 2.4995 -2.7511 5.8892 27 1 3.9719 -2.6095 6.0199 28 1 1.9915 -3.6473 6.9587 29 1 2.1740 -3.3310 4.5613 30 1 -0.3634 0.5127 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0278 -0.0005 33 1 1.6979 -1.7573 -1.2351 34 1 1.6588 -0.2246 -2.1389 35 1 3.9346 -1.1886 -2.1663 36 1 3.9161 0.3400 -1.2534 37 1 3.8388 -2.4806 -0.0860 38 1 5.1902 -1.3227 0.0149 39 1 6.1243 -1.4132 1.8678 40 1 6.0679 0.2309 1.1883 41 1 7.5478 1.8134 2.7877 42 1 5.8022 2.1165 2.9404 43 1 5.8916 1.8968 5.3505 44 1 7.2194 2.9865 4.8782 45 1 6.5190 -0.2848 6.3215 46 1 8.1023 -0.9299 5.8306 47 1 2.2614 0.9716 2.5610 48 1 0.5987 0.3484 2.4375 49 1 2.2884 -1.6245 3.6061 50 1 1.4735 -1.1746 8.0218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715475822.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:49 Heat of formation + Delta-G solvation = -76.586521 kcal Electronic energy + Delta-G solvation = -32965.766647 eV Core-core repulsion = 28801.368915 eV Total energy + Delta-G solvation = -4164.397732 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.10082 -41.22161 -38.83906 -38.52287 -36.86641 -36.10718 -34.83906 -33.77515 -32.34929 -31.41942 -30.42909 -28.70010 -27.16253 -27.02783 -25.40497 -24.84612 -23.78674 -22.37834 -21.41872 -20.56458 -19.96283 -19.59919 -18.80087 -18.15067 -17.98352 -16.98021 -16.84864 -16.76244 -16.49983 -16.09015 -15.96353 -15.76725 -15.46802 -15.18525 -14.81863 -14.78885 -14.68338 -14.46805 -14.17090 -14.06850 -13.94287 -13.84087 -13.49866 -13.16171 -13.08566 -12.89752 -12.88222 -12.83630 -12.51561 -12.33772 -12.22619 -11.93082 -11.86964 -11.68985 -11.67299 -11.53760 -11.12775 -10.97884 -10.66316 -10.40199 -9.64889 -9.48683 -8.94626 -8.01435 -5.20805 1.19992 1.22467 1.29433 1.33176 1.70016 1.82501 2.17490 2.43722 2.65145 3.23941 3.31864 3.52427 3.61946 3.71284 3.85994 3.91811 3.99429 4.06274 4.10066 4.13548 4.19884 4.25938 4.30154 4.31037 4.35589 4.43510 4.53510 4.61790 4.64146 4.75742 4.76921 4.80757 4.86343 4.95500 4.99271 5.10181 5.14200 5.24197 5.26219 5.28672 5.40601 5.53791 5.64720 5.74403 5.78135 6.16792 6.22751 6.55443 6.85451 7.12012 7.45771 7.93396 8.10259 9.22109 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008854 B = 0.006187 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.602231 B = 4524.896021 C = 6485.919842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 H 0.072 0.928 4 C -0.110 4.110 5 C -0.125 4.125 6 C 0.100 3.900 7 N -0.614 5.614 8 C 0.452 3.548 9 O -0.503 6.503 10 C 0.096 3.904 11 N -0.585 5.585 12 C 0.086 3.914 13 C 0.037 3.963 14 O -0.369 6.369 15 C 0.055 3.945 16 C 0.484 3.516 17 O -0.586 6.586 18 C 0.148 3.852 19 H 0.054 0.946 20 C 0.171 3.829 21 N -0.721 5.721 22 C -0.184 4.184 23 H 0.053 0.947 24 C -0.064 4.064 25 N -0.988 5.988 26 Si 0.946 3.054 27 H -0.301 1.301 28 H -0.293 1.293 29 H -0.273 1.273 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.151 0.849 41 H 0.115 0.885 42 H 0.090 0.910 43 H 0.039 0.961 44 H 0.154 0.846 45 H 0.073 0.927 46 H 0.149 0.851 47 H 0.024 0.976 48 H 0.024 0.976 49 H 0.352 0.648 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.580 4.717 -23.169 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.091 0.909 4 C -0.147 4.147 5 C -0.162 4.162 6 C -0.022 4.022 7 N -0.351 5.351 8 C 0.237 3.763 9 O -0.376 6.376 10 C -0.030 4.030 11 N -0.317 5.317 12 C -0.036 4.036 13 C -0.040 4.040 14 O -0.287 6.287 15 C -0.025 4.025 16 C 0.273 3.727 17 O -0.467 6.467 18 C 0.044 3.956 19 H 0.072 0.928 20 C 0.046 3.954 21 N -0.364 5.364 22 C -0.316 4.316 23 H 0.071 0.929 24 C -0.254 4.254 25 N -0.642 5.642 26 Si 0.778 3.222 27 H -0.229 1.229 28 H -0.220 1.220 29 H -0.199 1.199 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.168 0.832 41 H 0.132 0.868 42 H 0.109 0.891 43 H 0.057 0.943 44 H 0.172 0.828 45 H 0.091 0.909 46 H 0.167 0.833 47 H 0.042 0.958 48 H 0.042 0.958 49 H 0.184 0.816 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.322 4.578 -22.498 26.057 hybrid contribution -0.263 -1.314 0.940 1.637 sum 12.059 3.265 -21.557 24.916 Atomic orbital electron populations 1.21854 0.94159 1.02178 1.02231 1.21387 0.96216 0.99600 0.93456 0.90912 1.21578 0.95912 1.00666 0.96569 1.21897 0.95414 1.01624 0.97312 1.22025 0.99134 0.97340 0.83682 1.48159 1.05650 1.62020 1.19261 1.21788 0.90728 0.80082 0.83709 1.91214 1.73487 1.44664 1.28241 1.21565 0.89215 1.03638 0.88589 1.47179 1.59100 1.09037 1.16350 1.22416 1.03794 0.78529 0.98820 1.23264 0.93121 0.96084 0.91483 1.88124 1.40083 1.17992 1.82533 1.22738 1.01437 0.85836 0.92449 1.21372 0.78022 0.86163 0.87174 1.90692 1.56385 1.18530 1.81068 1.21417 0.80217 0.98484 0.95466 0.92821 1.20876 0.96123 0.94008 0.84436 1.42544 1.72372 1.18331 1.03115 1.18951 1.27647 1.00092 0.84888 0.92869 1.25068 1.03842 1.01418 0.95116 1.69839 1.57071 1.39231 0.98098 0.85532 0.77766 0.82425 0.76456 1.22886 1.22015 1.19947 0.93841 0.90170 0.92661 0.91873 0.89529 0.88002 0.90886 0.91573 0.87975 0.87686 0.83179 0.86758 0.89132 0.94253 0.82821 0.90881 0.83323 0.95816 0.95827 0.81598 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.99 71.98 0.65 -2.47 16 2 C -0.09 -1.87 2.34 -10.72 -0.03 -1.90 16 3 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 4 C -0.11 -1.57 5.17 30.62 0.16 -1.42 16 5 C -0.12 -1.42 6.08 30.68 0.19 -1.24 16 6 C 0.10 1.69 6.35 86.37 0.55 2.23 16 7 N -0.61 -17.03 2.97 -795.03 -2.36 -19.39 16 8 C 0.45 15.24 7.37 87.65 0.65 15.88 16 9 O -0.50 -22.96 10.15 -3.05 -0.03 -23.00 16 10 C 0.10 2.42 4.15 85.63 0.36 2.78 16 11 N -0.59 -16.94 2.32 -828.60 -1.92 -18.87 16 12 C 0.09 1.78 6.63 86.53 0.57 2.35 16 13 C 0.04 0.85 6.91 72.05 0.50 1.35 16 14 O -0.37 -9.81 10.85 -148.98 -1.62 -11.43 16 15 C 0.05 1.71 6.98 71.12 0.50 2.21 16 16 C 0.48 17.53 7.58 87.69 0.66 18.19 16 17 O -0.59 -25.90 16.36 -3.05 -0.05 -25.95 16 18 C 0.15 4.59 2.37 44.98 0.11 4.70 16 19 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 20 C 0.17 7.26 4.85 86.38 0.42 7.68 16 21 N -0.72 -38.49 3.00 -343.45 -1.03 -39.52 16 22 C -0.18 -11.66 10.22 84.03 0.86 -10.80 16 23 H 0.05 3.64 8.06 -2.91 -0.02 3.62 16 24 C -0.06 -4.24 5.50 84.86 0.47 -3.77 16 25 N -0.99 -68.76 13.97 21.65 0.30 -68.46 16 26 Si 0.95 54.71 27.74 68.60 1.90 56.62 16 27 H -0.30 -18.19 7.11 99.48 0.71 -17.48 16 28 H -0.29 -16.57 7.11 99.48 0.71 -15.87 16 29 H -0.27 -14.98 6.52 99.48 0.65 -14.33 16 30 H 0.04 1.12 6.37 -2.39 -0.02 1.10 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 1.26 5.93 -2.39 -0.01 1.24 16 39 H 0.11 2.74 6.82 -2.38 -0.02 2.73 16 40 H 0.15 2.17 7.79 -2.39 -0.02 2.15 16 41 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.09 1.84 8.13 -2.39 -0.02 1.82 16 43 H 0.04 1.19 8.10 -2.38 -0.02 1.17 16 44 H 0.15 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 46 H 0.15 3.85 8.14 -2.39 -0.02 3.83 16 47 H 0.02 1.10 6.36 -2.39 -0.02 1.08 16 48 H 0.02 1.02 6.14 -2.39 -0.01 1.01 16 49 H 0.35 19.32 5.08 -92.71 -0.47 18.85 16 50 H 0.25 16.82 8.31 -92.71 -0.77 16.05 16 Total: -1.00 -92.93 382.51 2.20 -90.73 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.41 Total: 23.48 kcal Atomic # 6 Polarization: 29.18 SS G_CDS: 6.60 Total: 35.78 kcal Atomic # 7 Polarization: -141.22 SS G_CDS: -5.01 Total: -146.24 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -1.70 Total: -60.37 kcal Atomic # 14 Polarization: 54.71 SS G_CDS: 1.90 Total: 56.62 kcal Total: -92.93 2.20 -90.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715475822.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.139 kcal (2) G-P(sol) polarization free energy of solvation -92.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds