Wall clock time and date at job start Tue Mar 31 2020 23:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.50137 * 2 1 4 4 C 1.53039 * 109.52439 * 120.08272 * 2 1 3 5 5 C 1.53039 * 109.54037 * 181.33264 * 4 2 1 6 6 C 1.53193 * 109.31281 * 298.63548 * 5 4 2 7 7 N 1.46923 * 108.77680 * 54.62909 * 6 5 4 8 8 C 1.34785 * 120.62795 * 126.39321 * 7 6 5 9 9 O 1.21279 * 119.99695 * 185.94099 * 8 7 6 10 10 C 1.50704 * 120.00066 * 5.94203 * 8 7 6 11 11 N 1.46490 * 109.46788 * 179.97438 * 10 8 7 12 12 C 1.46094 * 118.72937 * 269.72998 * 11 10 8 13 13 C 1.53209 * 109.82379 * 161.47067 * 12 11 10 14 14 O 1.43246 * 108.51531 * 49.54371 * 13 12 11 15 15 C 1.42968 * 112.98358 * 291.45633 * 14 13 12 16 16 C 1.33871 * 118.72954 * 90.00356 * 11 10 8 17 17 O 1.21275 * 118.83489 * 1.87502 * 16 11 10 18 18 C 1.46923 * 118.73927 * 306.39650 * 7 6 5 19 19 H 1.09001 * 109.58731 * 293.81593 * 18 7 6 20 20 C 1.53005 * 109.70065 * 173.46244 * 18 7 6 21 21 N 1.46499 * 109.46998 * 69.54376 * 20 18 7 22 22 C 1.36938 * 119.99774 * 174.77313 * 21 20 18 23 23 H 1.08000 * 120.00347 * 359.97438 * 22 21 20 24 24 C 1.38815 * 120.00182 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99689 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00391 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47143 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47183 * 119.99992 * 26 24 22 29 29 H 1.48499 * 109.47381 * 240.00038 * 26 24 22 30 30 H 1.08999 * 109.47433 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47517 * 300.06435 * 1 2 3 32 32 H 1.09003 * 109.47088 * 60.06683 * 1 2 3 33 33 H 1.08999 * 109.45771 * 301.35249 * 4 2 1 34 34 H 1.09005 * 109.46176 * 61.31069 * 4 2 1 35 35 H 1.08998 * 109.49761 * 58.58243 * 5 4 2 36 36 H 1.08996 * 109.50281 * 178.64883 * 5 4 2 37 37 H 1.09000 * 109.59240 * 174.42439 * 6 5 4 38 38 H 1.09006 * 109.58267 * 294.70353 * 6 5 4 39 39 H 1.08999 * 109.46989 * 300.00008 * 10 8 7 40 40 H 1.08999 * 109.46931 * 59.99671 * 10 8 7 41 41 H 1.08996 * 109.39604 * 281.78449 * 12 11 10 42 42 H 1.08998 * 109.39435 * 41.50651 * 12 11 10 43 43 H 1.08997 * 109.83251 * 289.74786 * 13 12 11 44 44 H 1.09004 * 109.67300 * 169.24044 * 13 12 11 45 45 H 1.08996 * 109.41808 * 289.49275 * 15 14 13 46 46 H 1.09000 * 109.41601 * 169.69876 * 15 14 13 47 47 H 1.09008 * 109.46959 * 189.54216 * 20 18 7 48 48 H 1.08998 * 109.47619 * 309.54072 * 20 18 7 49 49 H 0.96996 * 120.00669 * 354.77325 * 21 20 18 50 50 H 0.96998 * 120.00210 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7230 1.2481 5 6 3.5714 -0.6943 1.2654 6 6 4.1059 -1.4255 0.0299 7 7 3.5046 -0.8282 -1.1702 8 6 4.2807 -0.3846 -2.1789 9 8 3.7813 0.2031 -3.1149 10 6 5.7690 -0.6189 -2.1437 11 7 6.3819 -0.0465 -3.3448 12 6 6.5203 -0.8874 -4.5314 13 6 6.7383 -0.0094 -5.7679 14 8 7.7812 0.9297 -5.4809 15 6 7.4010 1.9063 -4.5084 16 6 6.7986 1.2253 -3.3109 17 8 6.6864 1.8501 -2.2776 18 6 2.0413 -0.7235 -1.2497 19 1 1.6056 -1.7215 -1.2982 20 6 1.6479 0.0689 -2.4981 21 7 1.9473 -0.7230 -3.6936 22 6 1.5810 -0.2618 -4.9299 23 1 1.0709 0.6856 -5.0235 24 6 1.8651 -1.0119 -6.0628 25 7 2.4871 -2.1662 -5.9488 26 14 1.3647 -0.3831 -7.7491 27 1 0.6840 0.9290 -7.6062 28 1 2.5734 -0.2246 -8.5970 29 1 0.4382 -1.3542 -8.3846 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.6588 -0.2247 2.1388 34 1 1.6978 -1.7574 1.2351 35 1 3.9160 0.3398 1.2535 36 1 3.9345 -1.1883 2.1666 37 1 5.1901 -1.3230 -0.0149 38 1 3.8408 -2.4813 0.0871 39 1 6.1908 -0.1435 -1.2583 40 1 5.9674 -1.6902 -2.1102 41 1 7.3712 -1.5564 -4.4037 42 1 5.6139 -1.4781 -4.6642 43 1 5.8198 0.5262 -6.0077 44 1 7.0297 -0.6324 -6.6136 45 1 6.6693 2.5863 -4.9447 46 1 8.2803 2.4714 -4.1995 47 1 0.5811 0.2904 -2.4667 48 1 2.2117 1.0013 -2.5293 49 1 2.4051 -1.5741 -3.6097 50 1 2.6860 -2.6902 -6.7405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715475824.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:54 Heat of formation + Delta-G solvation = -52.673250 kcal Electronic energy + Delta-G solvation = -32884.288968 eV Core-core repulsion = 28720.928194 eV Total energy + Delta-G solvation = -4163.360775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.71578 -39.85113 -37.53929 -37.13881 -35.22311 -34.41714 -33.41519 -32.08260 -30.37478 -30.03053 -29.00722 -27.10577 -25.99937 -25.50897 -23.88818 -23.53935 -22.38137 -21.01843 -20.27822 -19.18253 -18.55318 -17.47692 -17.19158 -16.79018 -16.44714 -15.66368 -15.47093 -15.26264 -14.87296 -14.71803 -14.44950 -14.37190 -14.03831 -13.88484 -13.44566 -13.27871 -13.07926 -12.98927 -12.83703 -12.73566 -12.47799 -12.33242 -12.00361 -11.74234 -11.60137 -11.58359 -11.39678 -11.09771 -10.93714 -10.88172 -10.76688 -10.59265 -10.55052 -10.35608 -10.15002 -9.79691 -9.54178 -9.29350 -8.95453 -8.71631 -8.07098 -8.01677 -6.54412 -5.60341 -2.79454 2.61152 2.97354 3.34480 3.48668 3.50717 3.55589 3.57109 3.87297 4.49067 4.70035 4.73824 4.84139 4.91070 4.98192 5.05785 5.10460 5.17092 5.30227 5.31607 5.36465 5.45258 5.48970 5.54943 5.61311 5.71239 5.74647 5.75421 5.79076 5.81209 5.88300 5.91535 5.94274 5.96947 6.03630 6.15320 6.18859 6.33323 6.38433 6.46788 6.60714 6.69989 6.91027 6.98626 7.32681 7.52176 7.84073 7.96060 8.21244 8.58249 8.95982 9.69901 10.30327 10.65779 11.63686 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008047 B = 0.006306 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3478.705948 B = 4439.309817 C = 7116.378519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.135 4.135 6 C 0.112 3.888 7 N -0.617 5.617 8 C 0.463 3.537 9 O -0.437 6.437 10 C 0.095 3.905 11 N -0.577 5.577 12 C 0.085 3.915 13 C 0.046 3.954 14 O -0.377 6.377 15 C 0.053 3.947 16 C 0.496 3.504 17 O -0.551 6.551 18 C 0.150 3.850 19 H 0.067 0.933 20 C 0.159 3.841 21 N -0.697 5.697 22 C -0.199 4.199 23 H 0.063 0.937 24 C -0.023 4.023 25 N -0.940 5.940 26 Si 0.897 3.103 27 H -0.284 1.284 28 H -0.295 1.295 29 H -0.296 1.296 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.114 0.886 45 H 0.090 0.910 46 H 0.125 0.875 47 H 0.017 0.983 48 H 0.040 0.960 49 H 0.378 0.622 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.600 0.392 12.493 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 H 0.090 0.910 4 C -0.149 4.149 5 C -0.173 4.173 6 C -0.012 4.012 7 N -0.355 5.355 8 C 0.247 3.753 9 O -0.304 6.304 10 C -0.032 4.032 11 N -0.309 5.309 12 C -0.038 4.038 13 C -0.030 4.030 14 O -0.296 6.296 15 C -0.026 4.026 16 C 0.284 3.716 17 O -0.430 6.430 18 C 0.046 3.954 19 H 0.084 0.916 20 C 0.032 3.968 21 N -0.340 5.340 22 C -0.331 4.331 23 H 0.081 0.919 24 C -0.216 4.216 25 N -0.592 5.592 26 Si 0.730 3.270 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.224 1.224 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.122 0.878 43 H 0.093 0.907 44 H 0.132 0.868 45 H 0.108 0.892 46 H 0.143 0.857 47 H 0.034 0.966 48 H 0.058 0.942 49 H 0.211 0.789 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.399 1.188 12.197 14.315 hybrid contribution -0.404 -0.211 -0.783 0.906 sum 6.995 0.976 11.414 13.423 Atomic orbital electron populations 1.21837 0.94570 1.02000 1.01924 1.21472 0.95918 1.00050 0.94520 0.90987 1.21557 0.95030 1.00741 0.97596 1.21913 0.96420 1.01419 0.97540 1.21584 0.97744 0.96941 0.84929 1.47877 1.06164 1.63410 1.18076 1.20810 0.88602 0.82854 0.83040 1.91090 1.71771 1.35549 1.32036 1.21370 0.92348 0.99772 0.89685 1.46970 1.58282 1.12043 1.13562 1.22224 1.03559 0.93934 0.84107 1.23039 0.91827 0.91471 0.96711 1.88117 1.39032 1.42748 1.59680 1.22744 1.02030 0.91584 0.86289 1.20891 0.78198 0.81783 0.90769 1.90689 1.57486 1.62933 1.31922 1.21484 0.78986 0.99271 0.95636 0.91553 1.20963 0.95810 0.95273 0.84749 1.42203 1.68995 1.21933 1.00867 1.19202 1.27699 1.01855 0.84335 0.91905 1.24527 1.02665 0.97474 0.96977 1.69657 1.48384 1.13781 1.27386 0.86231 0.77541 0.77654 0.85606 1.20992 1.22302 1.22378 0.92645 0.92959 0.91663 0.92049 0.91900 0.91549 0.91174 0.90502 0.91843 0.87805 0.88489 0.91232 0.87752 0.90706 0.86843 0.89204 0.85726 0.96550 0.94209 0.78902 0.94254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.98 37.15 0.33 -1.48 16 2 C -0.10 -1.34 2.34 -90.50 -0.21 -1.55 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.11 -1.20 5.17 -26.69 -0.14 -1.33 16 5 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 6 C 0.11 1.28 6.32 -3.71 -0.02 1.25 16 7 N -0.62 -9.76 2.97 -165.21 -0.49 -10.26 16 8 C 0.46 8.60 7.15 -10.98 -0.08 8.52 16 9 O -0.44 -10.14 10.28 5.56 0.06 -10.08 16 10 C 0.09 1.45 4.21 -5.20 -0.02 1.43 16 11 N -0.58 -9.44 2.32 -175.68 -0.41 -9.84 16 12 C 0.08 1.28 6.63 -4.15 -0.03 1.25 16 13 C 0.05 0.68 6.91 37.27 0.26 0.94 16 14 O -0.38 -5.47 10.85 -35.23 -0.38 -5.86 16 15 C 0.05 0.75 6.98 35.84 0.25 1.00 16 16 C 0.50 8.52 7.58 -11.56 -0.09 8.43 16 17 O -0.55 -10.85 16.36 5.56 0.09 -10.76 16 18 C 0.15 2.52 2.38 -67.60 -0.16 2.36 16 19 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 20 C 0.16 3.43 4.80 -4.04 -0.02 3.41 16 21 N -0.70 -17.92 3.24 -59.90 -0.19 -18.11 16 22 C -0.20 -5.68 9.74 -15.06 -0.15 -5.83 16 23 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 25 N -0.94 -27.73 13.06 55.49 0.72 -27.00 16 26 Si 0.90 22.87 29.55 -169.99 -5.02 17.85 16 27 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.90 6.42 -51.93 -0.33 0.57 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.76 5.97 -51.93 -0.31 0.45 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 1.51 6.54 -51.93 -0.34 1.17 16 40 H 0.10 1.22 8.02 -51.93 -0.42 0.81 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.10 1.88 8.13 -51.93 -0.42 1.46 16 43 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 44 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 45 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 47 H 0.02 0.36 6.24 -51.92 -0.32 0.04 16 48 H 0.04 0.97 6.30 -51.93 -0.33 0.64 16 49 H 0.38 10.24 7.07 -40.82 -0.29 9.95 16 50 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 385.49 15.07 5.81 5.81 Total: -1.00 -34.55 385.49 -8.37 -42.92 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -8.22 Total: 9.21 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: -0.33 Total: 16.11 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.37 Total: -65.21 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.23 Total: -26.70 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.55 -8.37 -42.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715475824.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.749 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds