Wall clock time and date at job start Tue Mar 31 2020 23:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.49619 * 2 1 4 4 C 1.53039 * 109.52843 * 120.07915 * 2 1 3 5 5 C 1.53045 * 109.53468 * 58.60349 * 4 2 1 6 6 C 1.53186 * 109.31173 * 61.36500 * 5 4 2 7 7 N 1.46954 * 108.89237 * 305.44075 * 6 5 4 8 8 C 1.34778 * 120.65945 * 233.53481 * 7 6 5 9 9 O 1.21278 * 120.00511 * 185.20863 * 8 7 6 10 10 C 1.50703 * 119.99571 * 5.20494 * 8 7 6 11 11 N 1.46499 * 109.47070 * 179.97438 * 10 8 7 12 12 C 1.46094 * 118.73069 * 269.73466 * 11 10 8 13 13 C 1.53192 * 109.82286 * 161.46375 * 12 11 10 14 14 O 1.43244 * 108.54035 * 49.51666 * 13 12 11 15 15 C 1.42966 * 112.98452 * 291.48487 * 14 13 12 16 16 C 1.33875 * 118.72649 * 90.00450 * 11 10 8 17 17 O 1.21282 * 118.83346 * 1.88059 * 16 11 10 18 18 C 1.46929 * 118.71601 * 53.35545 * 7 6 5 19 19 H 1.09006 * 109.58262 * 66.49703 * 18 7 6 20 20 C 1.52996 * 109.59178 * 186.78528 * 18 7 6 21 21 N 1.46494 * 109.47432 * 177.78824 * 20 18 7 22 22 C 1.36941 * 120.00054 * 174.81577 * 21 20 18 23 23 H 1.07995 * 119.99847 * 0.28018 * 22 21 20 24 24 C 1.38806 * 119.99681 * 180.27532 * 22 21 20 25 25 N 1.31617 * 120.00593 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99768 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46792 * 90.00151 * 26 24 22 28 28 H 1.48498 * 109.47318 * 210.00235 * 26 24 22 29 29 H 1.48495 * 109.47146 * 330.00327 * 26 24 22 30 30 H 1.09004 * 109.47399 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47149 * 300.06437 * 1 2 3 32 32 H 1.08999 * 109.47514 * 60.06423 * 1 2 3 33 33 H 1.08997 * 109.45700 * 178.62360 * 4 2 1 34 34 H 1.09002 * 109.46107 * 298.58761 * 4 2 1 35 35 H 1.09003 * 109.49137 * 181.32050 * 5 4 2 36 36 H 1.09008 * 109.49501 * 301.41192 * 5 4 2 37 37 H 1.09001 * 109.58786 * 65.15526 * 6 5 4 38 38 H 1.09003 * 109.58331 * 185.43209 * 6 5 4 39 39 H 1.08998 * 109.47269 * 300.00436 * 10 8 7 40 40 H 1.09005 * 109.46989 * 60.00166 * 10 8 7 41 41 H 1.08999 * 109.39464 * 281.77916 * 12 11 10 42 42 H 1.08993 * 109.39280 * 41.50356 * 12 11 10 43 43 H 1.09006 * 109.78940 * 289.72328 * 13 12 11 44 44 H 1.09001 * 109.53986 * 169.16108 * 13 12 11 45 45 H 1.09003 * 109.41606 * 289.49343 * 15 14 13 46 46 H 1.09001 * 109.41218 * 169.70346 * 15 14 13 47 47 H 1.08996 * 109.46879 * 57.78596 * 20 18 7 48 48 H 1.09000 * 109.46767 * 297.78993 * 20 18 7 49 49 H 0.96997 * 119.99823 * 355.09328 * 21 20 18 50 50 H 0.97000 * 120.00076 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0415 -0.7229 1.2481 5 6 1.5044 -2.1559 1.2658 6 6 2.0154 -2.9037 0.0303 7 7 1.6550 -2.1389 -1.1716 8 6 0.9801 -2.7232 -2.1814 9 8 0.7712 -2.1096 -3.2064 10 6 0.4851 -4.1392 -2.0367 11 7 -0.2126 -4.5401 -3.2609 12 6 -1.6507 -4.3025 -3.3596 13 6 -2.0861 -4.3533 -4.8274 14 8 -1.5569 -5.5459 -5.4185 15 6 -0.1335 -5.5197 -5.5500 16 6 0.4914 -5.1151 -4.2438 17 8 1.6755 -5.3162 -4.0748 18 6 2.0412 -0.7234 -1.2499 19 1 3.1272 -0.6432 -1.2999 20 6 1.4221 -0.0909 -2.4978 21 7 1.7651 1.3325 -2.5453 22 6 1.4092 2.0867 -3.6315 23 1 0.8718 1.6331 -4.4511 24 6 1.7392 3.4341 -3.6790 25 7 2.3946 3.9868 -2.6803 26 14 1.2545 4.4628 -5.1611 27 1 -0.0886 5.0546 -4.9348 28 1 2.2478 5.5493 -5.3558 29 1 1.2187 3.6021 -6.3706 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5149 0.8894 32 1 -0.3634 0.5128 -0.8905 33 1 3.1312 -0.7436 1.2347 34 1 1.6994 -0.1959 2.1389 35 1 1.8500 -2.6628 2.1668 36 1 0.4146 -2.1361 1.2542 37 1 3.0994 -3.0035 0.0860 38 1 1.5592 -3.8927 -0.0127 39 1 1.3315 -4.8044 -1.8659 40 1 -0.2008 -4.1998 -1.1916 41 1 -2.1835 -5.0667 -2.7937 42 1 -1.8843 -3.3206 -2.9482 43 1 -1.7020 -3.4812 -5.3567 44 1 -3.1745 -4.3686 -4.8845 45 1 0.1459 -4.8034 -6.3226 46 1 0.2227 -6.5109 -5.8304 47 1 0.3385 -0.2026 -2.4622 48 1 1.8095 -0.5879 -3.3872 49 1 2.2477 1.7399 -1.8092 50 1 2.6255 4.9283 -2.7137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715475826.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:57 Heat of formation + Delta-G solvation = -97.162429 kcal Electronic energy + Delta-G solvation = -32049.001130 eV Core-core repulsion = 27883.711159 eV Total energy + Delta-G solvation = -4165.289970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.18173 -41.31253 -38.92396 -38.66757 -36.75714 -36.29518 -34.66039 -33.77275 -31.79608 -31.39888 -30.41835 -28.59474 -27.31641 -27.03569 -25.46187 -24.87005 -24.72336 -22.47510 -21.56266 -20.09484 -19.51832 -19.17114 -18.77576 -18.21340 -18.12269 -17.14390 -17.01765 -16.47422 -16.43518 -16.30919 -15.95752 -15.66595 -15.44842 -15.16673 -15.09530 -14.86350 -14.75734 -14.52062 -14.41399 -14.17595 -13.91869 -13.64848 -13.28682 -13.07604 -13.01251 -12.81383 -12.79865 -12.62427 -12.45263 -12.31584 -12.13023 -12.02761 -11.97771 -11.80190 -11.61713 -11.36999 -11.25129 -10.96339 -10.64346 -10.44700 -9.72273 -9.57486 -8.95797 -7.97751 -5.25172 1.24071 1.41276 1.43800 1.52673 1.60422 1.67133 2.06257 2.54080 2.72417 3.26278 3.34986 3.45312 3.72791 3.80688 3.85588 3.89360 4.02278 4.08820 4.10936 4.13879 4.18380 4.20820 4.29673 4.39203 4.41546 4.47161 4.51958 4.62586 4.68779 4.70717 4.78177 4.79950 4.87254 4.95590 5.02909 5.10556 5.14188 5.22035 5.28656 5.33783 5.38894 5.43973 5.55704 5.69748 5.72003 6.19225 6.24909 6.45445 6.86298 7.20716 7.31166 8.06913 8.33646 9.25873 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009476 B = 0.004105 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.234700 B = 6819.945783 C = 8933.510724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 H 0.054 0.946 4 C -0.111 4.111 5 C -0.127 4.127 6 C 0.099 3.901 7 N -0.599 5.599 8 C 0.484 3.516 9 O -0.564 6.564 10 C 0.096 3.904 11 N -0.589 5.589 12 C 0.080 3.920 13 C 0.040 3.960 14 O -0.373 6.373 15 C 0.056 3.944 16 C 0.484 3.516 17 O -0.583 6.583 18 C 0.153 3.847 19 H 0.052 0.948 20 C 0.178 3.822 21 N -0.743 5.743 22 C -0.240 4.240 23 H 0.059 0.941 24 C -0.071 4.071 25 N -0.967 5.967 26 Si 0.972 3.028 27 H -0.283 1.283 28 H -0.289 1.289 29 H -0.278 1.278 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.025 0.975 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.152 0.848 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.050 0.950 44 H 0.149 0.851 45 H 0.092 0.908 46 H 0.149 0.851 47 H 0.018 0.982 48 H 0.016 0.984 49 H 0.372 0.628 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.439 -23.511 8.945 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.114 4.114 3 H 0.072 0.928 4 C -0.149 4.149 5 C -0.164 4.164 6 C -0.022 4.022 7 N -0.333 5.333 8 C 0.272 3.728 9 O -0.442 6.442 10 C -0.030 4.030 11 N -0.320 5.320 12 C -0.042 4.042 13 C -0.037 4.037 14 O -0.291 6.291 15 C -0.024 4.024 16 C 0.273 3.727 17 O -0.464 6.464 18 C 0.048 3.952 19 H 0.070 0.930 20 C 0.053 3.947 21 N -0.388 5.388 22 C -0.372 4.372 23 H 0.077 0.923 24 C -0.263 4.263 25 N -0.618 5.618 26 Si 0.801 3.199 27 H -0.209 1.209 28 H -0.215 1.215 29 H -0.203 1.203 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.169 0.831 41 H 0.128 0.872 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.166 0.834 45 H 0.110 0.890 46 H 0.167 0.833 47 H 0.036 0.964 48 H 0.034 0.966 49 H 0.205 0.795 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.173 -23.475 8.249 26.519 hybrid contribution 0.618 1.829 -0.769 2.078 sum -8.555 -21.646 7.480 24.447 Atomic orbital electron populations 1.21698 0.94618 1.01616 1.00731 1.21348 0.96955 0.98575 0.94497 0.92787 1.21554 1.00567 0.96627 0.96117 1.21955 1.01926 0.94617 0.97950 1.22144 1.01529 0.95646 0.82924 1.48201 1.55820 1.10085 1.19200 1.21825 0.78000 0.90064 0.82927 1.90801 1.58132 1.65061 1.30191 1.21585 1.00870 0.91385 0.89139 1.47256 1.10002 1.58242 1.16494 1.22461 0.78292 1.03984 0.99452 1.23230 1.02317 0.87146 0.91005 1.88163 1.18873 1.39652 1.82415 1.22826 0.81335 1.06067 0.92136 1.21551 0.87000 0.76891 0.87268 1.90709 1.17262 1.57386 1.81077 1.21204 0.97420 0.80776 0.95750 0.92998 1.21072 0.96391 0.82581 0.94694 1.42718 1.68768 1.05859 1.21478 1.19454 1.28758 0.91682 0.97349 0.92274 1.25484 1.01887 0.97870 1.01075 1.69800 1.46554 1.11985 1.33427 0.85169 0.77360 0.78263 0.79155 1.20941 1.21531 1.20290 0.91344 0.91923 0.95609 0.91877 0.90421 0.87456 0.90464 0.90688 0.86640 0.86383 0.83060 0.87156 0.89483 0.93146 0.83363 0.89030 0.83347 0.96428 0.96617 0.79506 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 8.20 71.98 0.59 -3.32 16 2 C -0.09 -2.95 2.52 -10.72 -0.03 -2.98 16 3 H 0.05 2.08 6.86 -2.39 -0.02 2.07 16 4 C -0.11 -2.31 5.43 30.62 0.17 -2.15 16 5 C -0.13 -1.73 5.74 30.67 0.18 -1.56 16 6 C 0.10 1.58 6.34 86.36 0.55 2.13 16 7 N -0.60 -16.35 2.43 -794.95 -1.93 -18.28 16 8 C 0.48 14.57 7.59 87.66 0.67 15.23 16 9 O -0.56 -23.11 11.98 -3.02 -0.04 -23.15 16 10 C 0.10 1.92 4.15 85.63 0.36 2.27 16 11 N -0.59 -12.92 2.32 -828.62 -1.92 -14.84 16 12 C 0.08 1.20 6.63 86.52 0.57 1.78 16 13 C 0.04 0.61 6.91 72.05 0.50 1.10 16 14 O -0.37 -6.78 10.85 -148.98 -1.62 -8.39 16 15 C 0.06 1.11 6.98 71.12 0.50 1.61 16 16 C 0.48 12.81 7.58 87.69 0.66 13.47 16 17 O -0.58 -19.82 16.36 -3.04 -0.05 -19.87 16 18 C 0.15 5.51 2.81 44.97 0.13 5.63 16 19 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 20 C 0.18 8.51 3.58 86.38 0.31 8.82 16 21 N -0.74 -41.69 5.38 -343.48 -1.85 -43.53 16 22 C -0.24 -14.79 9.99 84.03 0.84 -13.95 16 23 H 0.06 3.66 7.83 -2.91 -0.02 3.64 16 24 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 25 N -0.97 -61.34 13.06 21.65 0.28 -61.05 16 26 Si 0.97 48.96 29.55 68.60 2.03 50.98 16 27 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 28 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 29 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 30 H 0.07 1.71 5.98 -2.38 -0.01 1.70 16 31 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.02 0.99 6.39 -2.39 -0.02 0.97 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 1.01 6.34 -2.38 -0.02 1.00 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 38 H 0.12 1.06 5.94 -2.39 -0.01 1.05 16 39 H 0.12 2.31 6.82 -2.39 -0.02 2.29 16 40 H 0.15 1.57 7.80 -2.38 -0.02 1.55 16 41 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.09 1.39 8.13 -2.39 -0.02 1.37 16 43 H 0.05 0.99 8.10 -2.38 -0.02 0.97 16 44 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 46 H 0.15 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.02 0.89 5.52 -2.39 -0.01 0.88 16 48 H 0.02 0.88 6.27 -2.39 -0.01 0.86 16 49 H 0.37 21.44 6.33 -92.71 -0.59 20.85 16 50 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -86.66 381.25 1.72 -84.93 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.37 Total: 28.96 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: 6.45 Total: 24.25 kcal Atomic # 7 Polarization: -132.29 SS G_CDS: -5.42 Total: -137.71 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -1.70 Total: -51.41 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.03 Total: 50.98 kcal Total: -86.66 1.72 -84.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715475826.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.232 kcal (2) G-P(sol) polarization free energy of solvation -86.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds