Wall clock time and date at job start Tue Mar 31 2020 23:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.00153 * 2 1 4 4 C 1.54340 * 109.98836 * 238.96293 * 2 1 3 5 5 C 1.55156 * 103.01844 * 218.66906 * 4 2 1 6 6 H 1.08999 * 111.00513 * 277.22995 * 5 4 2 7 7 N 1.46905 * 111.00515 * 153.38298 * 5 4 2 8 8 C 1.46895 * 111.00296 * 161.34807 * 7 5 4 9 9 C 1.50698 * 109.47282 * 180.02562 * 8 7 5 10 10 O 1.21288 * 119.99806 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00092 * 179.97438 * 9 8 7 12 12 C 1.37093 * 119.99981 * 179.97438 * 11 9 8 13 13 H 1.07995 * 120.00134 * 0.02562 * 12 11 9 14 14 C 1.38953 * 120.00123 * 180.02562 * 12 11 9 15 15 N 1.31412 * 119.99540 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00193 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46948 * 60.00032 * 16 14 12 18 18 H 1.48499 * 109.46940 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47016 * 300.00497 * 16 14 12 20 20 C 1.54908 * 101.58319 * 35.30812 * 5 4 2 21 21 N 1.47022 * 109.88092 * 121.10239 * 2 1 3 22 22 C 1.34782 * 125.64655 * 298.38971 * 21 2 1 23 23 O 1.21284 * 119.99469 * 359.72052 * 22 21 2 24 24 C 1.50699 * 120.00124 * 179.71884 * 22 21 2 25 25 C 1.52997 * 109.46976 * 179.97438 * 24 22 21 26 26 O 1.42896 * 112.91018 * 53.74861 * 25 24 22 27 27 C 1.53784 * 113.61330 * 184.99861 * 25 24 22 28 28 C 1.53787 * 87.07923 * 139.97966 * 27 25 24 29 29 C 1.53778 * 87.08035 * 334.56830 * 28 27 25 30 30 H 1.09000 * 109.47185 * 300.36130 * 1 2 3 31 31 H 1.09005 * 109.46833 * 60.35253 * 1 2 3 32 32 H 1.08996 * 109.47595 * 180.35359 * 1 2 3 33 33 H 1.09000 * 110.84739 * 100.20286 * 4 2 1 34 34 H 1.08997 * 110.66707 * 337.04959 * 4 2 1 35 35 H 1.00897 * 110.99537 * 37.39738 * 7 5 4 36 36 H 1.09004 * 109.46986 * 300.00363 * 8 7 5 37 37 H 1.08998 * 109.47208 * 59.99556 * 8 7 5 38 38 H 0.96999 * 119.99536 * 0.02562 * 11 9 8 39 39 H 0.97005 * 119.99862 * 179.97438 * 15 14 12 40 40 H 1.09001 * 110.36775 * 204.15001 * 20 5 4 41 41 H 1.09003 * 110.36788 * 81.83038 * 20 5 4 42 42 H 1.08997 * 109.47034 * 59.99836 * 24 22 21 43 43 H 1.08996 * 109.47007 * 299.99906 * 24 22 21 44 44 H 0.96698 * 113.99953 * 311.25221 * 26 25 24 45 45 H 1.09004 * 113.61451 * 25.43452 * 27 25 24 46 46 H 1.08994 * 113.61477 * 254.52754 * 27 25 24 47 47 H 1.08998 * 113.61103 * 89.12089 * 28 27 25 48 48 H 1.08999 * 113.61167 * 220.01551 * 28 27 25 49 49 H 1.08999 * 113.61111 * 139.98327 * 29 28 27 50 50 H 1.08999 * 113.61280 * 270.79710 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0575 -0.7478 -1.2428 5 6 3.2862 -1.5185 -0.6915 6 1 4.1668 -0.8771 -0.6580 7 7 3.5481 -2.7277 -1.4836 8 6 4.9183 -3.2114 -1.2686 9 6 5.1497 -4.4495 -2.0959 10 8 4.2606 -4.8858 -2.7961 11 7 6.3448 -5.0715 -2.0585 12 6 6.5550 -6.1981 -2.8107 13 1 5.7631 -6.5871 -3.4336 14 6 7.7869 -6.8397 -2.7718 15 7 8.7503 -6.3666 -2.0135 16 14 8.0737 -8.3745 -3.7973 17 1 7.8821 -8.0525 -5.2343 18 1 9.4587 -8.8637 -3.5795 19 1 7.1078 -9.4275 -3.3930 20 6 2.8097 -1.8827 0.7368 21 7 2.0299 -0.7142 1.1838 22 6 1.8073 -0.3622 2.4657 23 8 1.1474 0.6236 2.7179 24 6 2.3783 -1.1936 3.5854 25 6 1.9814 -0.5801 4.9297 26 8 0.5718 -0.3831 5.0567 27 6 2.6163 -1.2850 6.1400 28 6 2.8129 0.1124 6.7512 29 6 2.8130 0.6554 5.3125 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5084 -0.8932 32 1 -0.3634 -1.0276 0.0063 33 1 2.3597 -0.0450 -2.0192 34 1 1.3065 -1.4405 -1.6226 35 1 3.3723 -2.5632 -2.4634 36 1 5.6273 -2.4385 -1.5658 37 1 5.0591 -3.4472 -0.2138 38 1 7.0558 -4.7223 -1.4988 39 1 9.6103 -6.8147 -1.9860 40 1 3.6653 -2.0414 1.3932 41 1 2.1799 -2.7719 0.7114 42 1 3.4649 -1.2163 3.5035 43 1 1.9877 -2.2091 3.5196 44 1 0.1667 0.0598 4.2985 45 1 3.5510 -1.7952 5.9073 46 1 1.9185 -1.9107 6.6964 47 1 1.9650 0.4519 7.3460 48 1 3.7669 0.2343 7.2641 49 1 2.2741 1.5962 5.2009 50 1 3.8017 0.6771 4.8541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717812333.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:02 Heat of formation + Delta-G solvation = -97.713972 kcal Electronic energy + Delta-G solvation = -29849.277235 eV Core-core repulsion = 25683.963348 eV Total energy + Delta-G solvation = -4165.313887 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.92532 -39.59654 -38.39819 -37.64262 -34.97608 -34.58638 -33.86186 -32.60594 -31.30891 -30.21009 -29.94367 -26.42690 -26.11943 -25.97774 -24.30978 -23.84969 -21.88995 -20.97139 -19.85177 -19.45489 -19.06815 -17.95532 -17.51794 -16.90746 -16.53586 -16.15477 -15.70859 -15.51252 -15.27869 -15.00831 -14.73859 -14.56889 -14.27371 -13.90830 -13.76719 -13.57294 -13.40493 -13.28205 -13.09504 -12.78618 -12.59664 -12.42332 -12.28833 -12.14931 -11.84152 -11.73275 -11.57189 -11.42891 -11.30530 -11.18424 -11.10218 -11.06436 -10.90499 -10.66831 -10.48637 -10.26801 -9.90862 -9.86849 -9.56011 -8.94360 -8.58441 -8.25088 -8.02936 -6.47531 -3.88607 2.30554 2.62628 3.16010 3.22456 3.26521 3.81669 3.85040 3.88947 4.09202 4.23982 4.25590 4.31574 4.40962 4.44501 4.58487 4.76327 4.79491 4.93658 5.00390 5.02111 5.13868 5.16057 5.17349 5.22519 5.36331 5.40155 5.41442 5.44045 5.50024 5.54388 5.62908 5.65818 5.67759 5.78866 5.83246 5.83429 5.90602 5.98943 6.01675 6.10876 6.14181 6.18636 7.03988 7.19134 7.46197 7.49634 7.57929 7.90315 7.99514 8.54256 9.11669 9.47227 9.98176 10.69975 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013719 B = 0.002198 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.516111 B =12736.433288 C =14314.629472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 H 0.076 0.924 4 C -0.130 4.130 5 C 0.074 3.926 6 H 0.060 0.940 7 N -0.656 5.656 8 C 0.049 3.951 9 C 0.439 3.561 10 O -0.583 6.583 11 N -0.562 5.562 12 C -0.301 4.301 13 H 0.103 0.897 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.931 3.069 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.105 3.895 21 N -0.610 5.610 22 C 0.536 3.464 23 O -0.547 6.547 24 C -0.161 4.161 25 C 0.129 3.871 26 O -0.548 6.548 27 C -0.129 4.129 28 C -0.135 4.135 29 C -0.161 4.161 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.357 0.643 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.273 0.727 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.388 0.612 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.068 0.932 49 H 0.075 0.925 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.834 14.747 11.757 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.094 0.906 4 C -0.169 4.169 5 C -0.038 4.038 6 H 0.078 0.922 7 N -0.290 5.290 8 C -0.083 4.083 9 C 0.224 3.776 10 O -0.468 6.468 11 N -0.198 5.198 12 C -0.430 4.430 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.542 5.542 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.018 4.018 21 N -0.344 5.344 22 C 0.326 3.674 23 O -0.426 6.426 24 C -0.201 4.201 25 C 0.087 3.913 26 O -0.360 6.360 27 C -0.166 4.166 28 C -0.173 4.173 29 C -0.199 4.199 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.178 0.822 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.243 0.757 45 H 0.112 0.888 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.086 0.914 49 H 0.093 0.907 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.767 14.199 12.516 21.775 hybrid contribution 1.303 0.248 -1.275 1.840 sum -9.463 14.447 11.241 20.606 Atomic orbital electron populations 1.22127 0.94402 1.02567 1.02884 1.21530 0.94893 0.96153 0.84030 0.90618 1.22922 0.98014 0.99429 0.96497 1.22614 0.96892 0.90866 0.93397 0.92227 1.59976 1.25124 1.29723 1.14160 1.21748 0.89016 0.96573 1.00996 1.19747 0.83958 0.86944 0.86906 1.90531 1.43501 1.67911 1.44807 1.41855 1.11633 1.25266 1.41079 1.19651 0.98755 1.02403 1.22230 0.87935 1.25269 0.95248 0.99631 0.97717 1.69601 1.04371 1.41113 1.39163 0.85914 0.77279 0.81093 0.79929 1.19885 1.20952 1.19834 1.22443 0.95539 0.88537 0.95311 1.48595 1.52283 1.28476 1.05028 1.20314 0.79974 0.84861 0.82281 1.90534 1.41235 1.27953 1.82925 1.22370 1.03300 1.01111 0.93362 1.21802 0.82488 0.95468 0.91535 1.86340 1.18772 1.82301 1.48605 1.23078 1.00515 0.97312 0.95712 1.22743 1.01972 0.96107 0.96440 1.23566 1.00406 0.99109 0.96788 0.91256 0.91622 0.92226 0.89918 0.88976 0.82229 0.93634 0.89591 0.77459 0.91758 0.90598 0.89526 0.87680 0.87863 0.75717 0.88753 0.90430 0.89871 0.91373 0.90667 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.11 37.16 0.34 -1.15 16 2 C 0.14 1.29 3.46 -66.95 -0.23 1.06 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.13 -1.16 5.95 -24.89 -0.15 -1.31 16 5 C 0.07 0.76 3.32 -65.56 -0.22 0.54 16 6 H 0.06 0.60 7.92 -51.93 -0.41 0.19 16 7 N -0.66 -9.09 6.00 -105.73 -0.63 -9.72 16 8 C 0.05 0.77 6.04 -4.98 -0.03 0.74 16 9 C 0.44 9.73 7.82 -10.99 -0.09 9.65 16 10 O -0.58 -15.07 15.78 5.55 0.09 -14.98 16 11 N -0.56 -13.61 5.29 -10.97 -0.06 -13.67 16 12 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 13 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 14 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 15 N -0.90 -23.85 13.05 55.50 0.72 -23.13 16 16 Si 0.93 20.54 29.55 -169.99 -5.02 15.51 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 C 0.11 1.04 6.34 -2.53 -0.02 1.02 16 21 N -0.61 -6.08 3.06 -163.01 -0.50 -6.58 16 22 C 0.54 5.70 7.39 -10.98 -0.08 5.62 16 23 O -0.55 -6.94 12.65 -14.27 -0.18 -7.12 16 24 C -0.16 -1.41 4.35 -27.89 -0.12 -1.53 16 25 C 0.13 1.26 1.10 -89.81 -0.10 1.16 16 26 O -0.55 -6.55 13.40 -55.05 -0.74 -7.29 16 27 C -0.13 -1.06 7.47 -25.91 -0.19 -1.26 16 28 C -0.14 -1.12 8.02 -25.92 -0.21 -1.33 16 29 C -0.16 -1.48 7.16 -25.92 -0.19 -1.67 16 30 H 0.07 0.74 6.89 -51.93 -0.36 0.38 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.87 7.85 -51.93 -0.41 0.46 16 35 H 0.36 5.15 8.23 -39.29 -0.32 4.82 16 36 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.39 9.05 7.90 -40.82 -0.32 8.72 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.08 0.66 7.48 -51.93 -0.39 0.27 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.11 0.75 7.76 -51.93 -0.40 0.34 16 43 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.39 4.59 6.18 45.56 0.28 4.87 16 45 H 0.09 0.62 8.10 -51.93 -0.42 0.20 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 LS Contribution 402.26 15.07 6.06 6.06 Total: -1.00 -31.25 402.26 -9.53 -40.78 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -7.75 Total: 16.34 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -1.52 Total: 3.79 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.47 Total: -53.09 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.83 Total: -29.39 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.25 -9.53 -40.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717812333.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.932 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds