Wall clock time and date at job start Tue Mar 31 2020 23:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.00153 * 2 1 4 4 C 1.54340 * 109.98836 * 238.96293 * 2 1 3 5 5 C 1.55156 * 103.01844 * 218.66906 * 4 2 1 6 6 H 1.08999 * 111.00513 * 277.22995 * 5 4 2 7 7 N 1.46905 * 111.00515 * 153.38298 * 5 4 2 8 8 C 1.46895 * 111.00296 * 161.34807 * 7 5 4 9 9 C 1.50698 * 109.47282 * 180.02562 * 8 7 5 10 10 O 1.21288 * 119.99806 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00092 * 179.97438 * 9 8 7 12 12 C 1.37093 * 119.99981 * 179.97438 * 11 9 8 13 13 H 1.07995 * 120.00134 * 0.02562 * 12 11 9 14 14 C 1.38953 * 120.00123 * 180.02562 * 12 11 9 15 15 N 1.31412 * 119.99540 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00193 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46948 * 60.00032 * 16 14 12 18 18 H 1.48499 * 109.46940 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47016 * 300.00497 * 16 14 12 20 20 C 1.54908 * 101.58319 * 35.30812 * 5 4 2 21 21 N 1.47022 * 109.88092 * 121.10239 * 2 1 3 22 22 C 1.34782 * 125.64655 * 298.38971 * 21 2 1 23 23 O 1.21284 * 119.99469 * 359.72052 * 22 21 2 24 24 C 1.50699 * 120.00124 * 179.71884 * 22 21 2 25 25 C 1.52997 * 109.46976 * 179.97438 * 24 22 21 26 26 O 1.42896 * 112.91018 * 53.74861 * 25 24 22 27 27 C 1.53784 * 113.61330 * 184.99861 * 25 24 22 28 28 C 1.53787 * 87.07923 * 139.97966 * 27 25 24 29 29 C 1.53778 * 87.08035 * 334.56830 * 28 27 25 30 30 H 1.09000 * 109.47185 * 300.36130 * 1 2 3 31 31 H 1.09005 * 109.46833 * 60.35253 * 1 2 3 32 32 H 1.08996 * 109.47595 * 180.35359 * 1 2 3 33 33 H 1.09000 * 110.84739 * 100.20286 * 4 2 1 34 34 H 1.08997 * 110.66707 * 337.04959 * 4 2 1 35 35 H 1.00897 * 110.99537 * 37.39738 * 7 5 4 36 36 H 1.09004 * 109.46986 * 300.00363 * 8 7 5 37 37 H 1.08998 * 109.47208 * 59.99556 * 8 7 5 38 38 H 0.96999 * 119.99536 * 0.02562 * 11 9 8 39 39 H 0.97005 * 119.99862 * 179.97438 * 15 14 12 40 40 H 1.09001 * 110.36775 * 204.15001 * 20 5 4 41 41 H 1.09003 * 110.36788 * 81.83038 * 20 5 4 42 42 H 1.08997 * 109.47034 * 59.99836 * 24 22 21 43 43 H 1.08996 * 109.47007 * 299.99906 * 24 22 21 44 44 H 0.96698 * 113.99953 * 311.25221 * 26 25 24 45 45 H 1.09004 * 113.61451 * 25.43452 * 27 25 24 46 46 H 1.08994 * 113.61477 * 254.52754 * 27 25 24 47 47 H 1.08998 * 113.61103 * 89.12089 * 28 27 25 48 48 H 1.08999 * 113.61167 * 220.01551 * 28 27 25 49 49 H 1.08999 * 113.61111 * 139.98327 * 29 28 27 50 50 H 1.08999 * 113.61280 * 270.79710 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0575 -0.7478 -1.2428 5 6 3.2862 -1.5185 -0.6915 6 1 4.1668 -0.8771 -0.6580 7 7 3.5481 -2.7277 -1.4836 8 6 4.9183 -3.2114 -1.2686 9 6 5.1497 -4.4495 -2.0959 10 8 4.2606 -4.8858 -2.7961 11 7 6.3448 -5.0715 -2.0585 12 6 6.5550 -6.1981 -2.8107 13 1 5.7631 -6.5871 -3.4336 14 6 7.7869 -6.8397 -2.7718 15 7 8.7503 -6.3666 -2.0135 16 14 8.0737 -8.3745 -3.7973 17 1 7.8821 -8.0525 -5.2343 18 1 9.4587 -8.8637 -3.5795 19 1 7.1078 -9.4275 -3.3930 20 6 2.8097 -1.8827 0.7368 21 7 2.0299 -0.7142 1.1838 22 6 1.8073 -0.3622 2.4657 23 8 1.1474 0.6236 2.7179 24 6 2.3783 -1.1936 3.5854 25 6 1.9814 -0.5801 4.9297 26 8 0.5718 -0.3831 5.0567 27 6 2.6163 -1.2850 6.1400 28 6 2.8129 0.1124 6.7512 29 6 2.8130 0.6554 5.3125 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5084 -0.8932 32 1 -0.3634 -1.0276 0.0063 33 1 2.3597 -0.0450 -2.0192 34 1 1.3065 -1.4405 -1.6226 35 1 3.3723 -2.5632 -2.4634 36 1 5.6273 -2.4385 -1.5658 37 1 5.0591 -3.4472 -0.2138 38 1 7.0558 -4.7223 -1.4988 39 1 9.6103 -6.8147 -1.9860 40 1 3.6653 -2.0414 1.3932 41 1 2.1799 -2.7719 0.7114 42 1 3.4649 -1.2163 3.5035 43 1 1.9877 -2.2091 3.5196 44 1 0.1667 0.0598 4.2985 45 1 3.5510 -1.7952 5.9073 46 1 1.9185 -1.9107 6.6964 47 1 1.9650 0.4519 7.3460 48 1 3.7669 0.2343 7.2641 49 1 2.2741 1.5962 5.2009 50 1 3.8017 0.6771 4.8541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717812333.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:01 Heat of formation + Delta-G solvation = -120.221029 kcal Electronic energy + Delta-G solvation = -29850.253214 eV Core-core repulsion = 25683.963348 eV Total energy + Delta-G solvation = -4166.289866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.71033 -40.43911 -39.97547 -38.59790 -36.24697 -35.62631 -35.39642 -33.38880 -33.23030 -31.15589 -30.73074 -27.92910 -26.88530 -26.65063 -25.81291 -24.72208 -22.69621 -21.80550 -21.06420 -20.57723 -20.02857 -19.80169 -18.33457 -17.88214 -17.53761 -17.29816 -16.76079 -16.55707 -16.35547 -16.18599 -15.97918 -15.64413 -15.49688 -15.20043 -14.74112 -14.65347 -14.50854 -14.07664 -13.92804 -13.79712 -13.56639 -13.46805 -13.36524 -13.23139 -13.08557 -12.89928 -12.77323 -12.56254 -12.41104 -12.15457 -12.11828 -12.06796 -11.95859 -11.77253 -11.72436 -11.47766 -11.39671 -10.70330 -10.62051 -10.31773 -9.99074 -9.75153 -9.38527 -8.44761 -5.92882 1.41236 1.43746 1.50570 1.53850 1.85068 2.08757 2.30712 2.87238 3.14079 3.23250 3.28081 3.45756 3.58434 3.61976 3.70239 3.71947 3.91373 4.03015 4.09099 4.18333 4.30749 4.34339 4.37791 4.40961 4.48540 4.52773 4.60830 4.65456 4.71030 4.73634 4.79393 4.80416 4.84821 4.93370 4.97843 5.05028 5.12355 5.13297 5.26331 5.30807 5.37019 5.43294 5.44724 5.90207 6.11022 6.34817 6.41921 6.62662 6.73890 7.09269 7.15328 7.59668 8.14914 8.72240 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013719 B = 0.002198 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.516111 B =12736.433288 C =14314.629472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.135 3.865 3 H 0.076 0.924 4 C -0.122 4.122 5 C 0.076 3.924 6 H 0.074 0.926 7 N -0.667 5.667 8 C 0.065 3.935 9 C 0.438 3.562 10 O -0.624 6.624 11 N -0.573 5.573 12 C -0.332 4.332 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.989 3.011 17 H -0.272 1.272 18 H -0.272 1.272 19 H -0.273 1.273 20 C 0.107 3.893 21 N -0.609 5.609 22 C 0.531 3.469 23 O -0.571 6.571 24 C -0.156 4.156 25 C 0.115 3.885 26 O -0.566 6.566 27 C -0.124 4.124 28 C -0.134 4.134 29 C -0.161 4.161 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.352 0.648 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.385 0.615 45 H 0.117 0.883 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.085 0.915 49 H 0.055 0.945 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.645 14.962 12.106 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 H 0.094 0.906 4 C -0.160 4.160 5 C -0.034 4.034 6 H 0.092 0.908 7 N -0.301 5.301 8 C -0.067 4.067 9 C 0.226 3.774 10 O -0.510 6.510 11 N -0.211 5.211 12 C -0.462 4.462 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.813 3.187 17 H -0.197 1.197 18 H -0.196 1.196 19 H -0.198 1.198 20 C -0.017 4.017 21 N -0.342 5.342 22 C 0.322 3.678 23 O -0.453 6.453 24 C -0.195 4.195 25 C 0.074 3.926 26 O -0.378 6.378 27 C -0.161 4.161 28 C -0.171 4.171 29 C -0.199 4.199 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.173 0.827 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.146 0.854 43 H 0.127 0.873 44 H 0.239 0.761 45 H 0.135 0.865 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.103 0.897 49 H 0.074 0.926 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.568 14.429 12.884 21.581 hybrid contribution 0.849 0.243 -1.378 1.637 sum -8.719 14.673 11.506 20.584 Atomic orbital electron populations 1.22063 0.94471 1.02054 1.02805 1.21590 0.94864 0.96255 0.84113 0.90569 1.22873 0.97181 0.99364 0.96554 1.22644 0.97908 0.89751 0.93107 0.90830 1.59941 1.23957 1.31865 1.14334 1.21610 0.90710 0.93786 1.00644 1.20904 0.82486 0.87942 0.86117 1.90503 1.44576 1.69439 1.46490 1.41928 1.12653 1.25148 1.41358 1.19604 0.98854 1.04253 1.23505 0.90351 1.25986 0.94660 1.02013 0.98520 1.69656 1.04626 1.42052 1.39735 0.85040 0.77553 0.77701 0.78380 1.19745 1.19641 1.19797 1.22430 0.95863 0.87933 0.95441 1.48624 1.52088 1.28406 1.05041 1.20684 0.79645 0.84719 0.82784 1.90528 1.42323 1.29183 1.83267 1.22380 1.04535 1.00737 0.91891 1.22077 0.81488 0.96268 0.92804 1.86321 1.20390 1.82363 1.48714 1.23142 1.01137 0.97156 0.94676 1.22731 1.02401 0.96037 0.95955 1.23578 1.00703 0.97969 0.97610 0.92951 0.90096 0.92871 0.88195 0.89627 0.82726 0.91221 0.87369 0.76914 0.91341 0.88837 0.90677 0.85406 0.87257 0.76082 0.86463 0.91090 0.91070 0.89651 0.92627 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.11 71.98 0.66 -2.10 16 2 C 0.14 2.33 3.46 45.35 0.16 2.49 16 3 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.12 -1.90 5.95 31.79 0.19 -1.72 16 5 C 0.08 1.38 3.32 46.31 0.15 1.53 16 6 H 0.07 1.19 7.92 -2.39 -0.02 1.17 16 7 N -0.67 -17.15 6.00 -488.41 -2.93 -20.08 16 8 C 0.06 1.87 6.04 85.56 0.52 2.39 16 9 C 0.44 19.19 7.82 87.66 0.69 19.87 16 10 O -0.62 -32.51 15.78 -3.05 -0.05 -32.56 16 11 N -0.57 -27.74 5.29 -306.99 -1.62 -29.37 16 12 C -0.33 -18.19 9.68 84.04 0.81 -17.37 16 13 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 14 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 15 N -0.92 -48.02 13.05 21.66 0.28 -47.74 16 16 Si 0.99 41.71 29.55 68.60 2.03 43.74 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 19 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 20 C 0.11 1.84 6.34 86.86 0.55 2.39 16 21 N -0.61 -11.07 3.06 -788.03 -2.41 -13.49 16 22 C 0.53 10.67 7.39 87.66 0.65 11.32 16 23 O -0.57 -14.42 12.65 15.91 0.20 -14.21 16 24 C -0.16 -2.42 4.35 29.85 0.13 -2.29 16 25 C 0.12 2.12 1.10 -10.27 -0.01 2.11 16 26 O -0.57 -13.68 13.40 -130.03 -1.74 -15.42 16 27 C -0.12 -1.82 7.47 31.12 0.23 -1.59 16 28 C -0.13 -2.04 8.02 31.12 0.25 -1.79 16 29 C -0.16 -2.78 7.16 31.12 0.22 -2.56 16 30 H 0.05 1.11 6.89 -2.39 -0.02 1.10 16 31 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.49 7.85 -2.39 -0.02 1.47 16 35 H 0.35 9.66 8.23 -89.70 -0.74 8.92 16 36 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 37 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.40 18.10 7.90 -92.71 -0.73 17.37 16 39 H 0.28 13.62 8.31 -92.70 -0.77 12.85 16 40 H 0.09 1.29 7.48 -2.39 -0.02 1.27 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.13 1.38 7.76 -2.39 -0.02 1.37 16 43 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.39 9.45 6.18 -74.06 -0.46 9.00 16 45 H 0.12 1.18 8.10 -2.39 -0.02 1.16 16 46 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.10 1.38 8.04 -2.39 -0.02 1.36 16 Total: -1.00 -68.34 402.26 -1.55 -69.89 By element: Atomic # 1 Polarization: 47.66 SS G_CDS: -0.96 Total: 46.70 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 5.66 Total: 12.53 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -6.69 Total: -110.67 kcal Atomic # 8 Polarization: -60.60 SS G_CDS: -1.59 Total: -62.19 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -68.34 -1.55 -69.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717812333.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.331 kcal (2) G-P(sol) polarization free energy of solvation -68.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds