Wall clock time and date at job start Tue Mar 31 2020 23:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 110.32929 * 2 1 4 4 C 1.54918 * 110.36468 * 122.23108 * 2 1 3 5 5 C 1.55159 * 101.58227 * 155.95814 * 4 2 1 6 6 H 1.09000 * 110.71966 * 83.03761 * 5 4 2 7 7 N 1.46893 * 110.72172 * 206.13810 * 5 4 2 8 8 C 1.46903 * 111.00304 * 202.55957 * 7 5 4 9 9 C 1.50696 * 109.47177 * 179.97438 * 8 7 5 10 10 O 1.21292 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99627 * 179.97438 * 9 8 7 12 12 C 1.37090 * 119.99714 * 180.02562 * 11 9 8 13 13 H 1.07999 * 120.00232 * 0.02562 * 12 11 9 14 14 C 1.38955 * 119.99992 * 180.02562 * 12 11 9 15 15 N 1.31413 * 120.00236 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99845 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47174 * 270.00316 * 16 14 12 18 18 H 1.48501 * 109.47062 * 30.00267 * 16 14 12 19 19 H 1.48504 * 109.46913 * 150.00066 * 16 14 12 20 20 C 1.54330 * 103.10026 * 324.59002 * 5 4 2 21 21 N 1.47314 * 107.12258 * 21.97474 * 20 5 4 22 22 C 1.34777 * 125.61843 * 181.11179 * 21 20 5 23 23 O 1.21282 * 120.00106 * 180.22998 * 22 21 20 24 24 C 1.50699 * 119.99665 * 0.22027 * 22 21 20 25 25 C 1.52998 * 109.47006 * 180.02562 * 24 22 21 26 26 O 1.42900 * 112.85245 * 53.80303 * 25 24 22 27 27 C 1.53782 * 113.61130 * 282.49399 * 25 24 22 28 28 C 1.53786 * 87.08104 * 220.02011 * 27 25 24 29 29 C 1.53779 * 87.07984 * 25.43582 * 28 27 25 30 30 H 1.09000 * 109.47692 * 297.76495 * 1 2 3 31 31 H 1.09003 * 109.47324 * 57.77103 * 1 2 3 32 32 H 1.09004 * 109.47594 * 177.76192 * 1 2 3 33 33 H 1.09004 * 111.00081 * 37.88541 * 4 2 1 34 34 H 1.09000 * 111.03998 * 274.05128 * 4 2 1 35 35 H 1.00899 * 111.00478 * 78.60135 * 7 5 4 36 36 H 1.09005 * 109.46883 * 59.99694 * 8 7 5 37 37 H 1.09002 * 109.46817 * 300.00144 * 8 7 5 38 38 H 0.96999 * 120.00048 * 0.02562 * 11 9 8 39 39 H 0.97001 * 119.99781 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.87716 * 141.52123 * 20 5 4 41 41 H 1.09001 * 109.87631 * 262.68308 * 20 5 4 42 42 H 1.09003 * 109.47380 * 300.00161 * 24 22 21 43 43 H 1.09000 * 109.47240 * 60.00285 * 24 22 21 44 44 H 0.96699 * 113.99627 * 309.66638 * 26 25 24 45 45 H 1.09001 * 113.61686 * 334.57085 * 27 25 24 46 46 H 1.09008 * 113.61207 * 105.47469 * 27 25 24 47 47 H 1.09000 * 113.61471 * 270.88267 * 28 27 25 48 48 H 1.08997 * 113.60957 * 139.98259 * 28 27 25 49 49 H 1.09003 * 113.60866 * 220.01907 * 29 28 27 50 50 H 1.08997 * 113.69125 * 89.12921 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0690 -0.7746 1.2286 5 6 3.4788 -1.1965 0.7367 6 1 4.1948 -0.3869 0.8779 7 7 3.9283 -2.4120 1.4283 8 6 5.3928 -2.5243 1.3975 9 6 5.8155 -3.7799 2.1155 10 8 4.9792 -4.5098 2.6044 11 7 7.1230 -4.0924 2.2135 12 6 7.5076 -5.2349 2.8662 13 1 6.7629 -5.8848 3.3015 14 6 8.8555 -5.5568 2.9677 15 7 9.2243 -6.6518 3.5939 16 14 10.1434 -4.4330 2.2142 17 1 10.4047 -4.8492 0.8129 18 1 9.6493 -3.0328 2.2307 19 1 11.4003 -4.5237 3.0000 20 6 3.2569 -1.4734 -0.7653 21 7 2.0454 -0.7382 -1.1674 22 6 1.5007 -0.7374 -2.4002 23 8 0.4994 -0.0893 -2.6204 24 6 2.1359 -1.5416 -3.5051 25 6 1.3271 -1.3679 -4.7921 26 8 1.1405 0.0031 -5.1496 27 6 0.0317 -2.1961 -4.8221 28 6 0.3429 -2.4840 -6.3004 29 6 1.8221 -2.2455 -5.9539 30 1 -0.3634 0.4787 0.9093 31 1 -0.3634 0.5481 -0.8693 32 1 -0.3634 -1.0269 -0.0401 33 1 1.4520 -1.6476 1.4415 34 1 2.1378 -0.1252 2.1013 35 1 3.4944 -3.2335 1.0348 36 1 5.8340 -1.6580 1.8906 37 1 5.7323 -2.5652 0.3625 38 1 7.7917 -3.5088 1.8222 39 1 10.1652 -6.8766 3.6644 40 1 4.1152 -1.1215 -1.3377 41 1 3.1129 -2.5415 -0.9279 42 1 3.1560 -1.1935 -3.6677 43 1 2.1518 -2.5949 -3.2249 44 1 0.8070 0.5554 -4.4293 45 1 0.0652 -3.0822 -4.1882 46 1 -0.8700 -1.6019 -4.6734 47 1 -0.0699 -1.7437 -6.9857 48 1 0.1246 -3.5087 -6.6009 49 1 2.3657 -1.6912 -6.7190 50 1 2.3463 -3.1444 -5.6295 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717812334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:05 Heat of formation + Delta-G solvation = -88.116946 kcal Electronic energy + Delta-G solvation = -29965.225001 eV Core-core repulsion = 25800.327272 eV Total energy + Delta-G solvation = -4164.897729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.02086 -39.68378 -38.58793 -37.73494 -35.05399 -34.64080 -33.93088 -32.70948 -31.74259 -30.30052 -30.00312 -26.61605 -26.05366 -25.98713 -24.25160 -23.75266 -22.09273 -21.16708 -19.90761 -19.49167 -19.30472 -18.46529 -17.44334 -16.96807 -16.60449 -16.22645 -15.89935 -15.56239 -15.24419 -15.10669 -14.86866 -14.74442 -14.42694 -13.92320 -13.91011 -13.49117 -13.27922 -13.21096 -12.94530 -12.76347 -12.67265 -12.52978 -12.42597 -12.28361 -12.21385 -11.88729 -11.86318 -11.62360 -11.48768 -11.27300 -11.22551 -11.15133 -11.00551 -10.68714 -10.65394 -10.03702 -9.93587 -9.82259 -9.64345 -9.04942 -8.70222 -8.33860 -8.24473 -6.37215 -3.89129 2.23088 2.54469 2.97018 3.01043 3.10374 3.64460 3.78656 3.83271 4.01372 4.04575 4.20622 4.24733 4.33463 4.39934 4.54054 4.70115 4.73870 4.77978 4.83920 4.94854 4.98482 5.06822 5.10945 5.14932 5.27261 5.32472 5.32880 5.36084 5.43930 5.45413 5.49186 5.62689 5.64381 5.70529 5.76194 5.77949 5.83031 5.92595 5.94048 5.97107 6.06673 6.21859 6.89986 7.09761 7.35862 7.50907 7.51454 7.83964 8.07343 8.52317 8.88194 9.35270 9.74266 10.75722 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.002299 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.770712 B =12176.190904 C =13426.945086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.077 0.923 4 C -0.117 4.117 5 C 0.078 3.922 6 H 0.096 0.904 7 N -0.652 5.652 8 C 0.045 3.955 9 C 0.448 3.552 10 O -0.565 6.565 11 N -0.589 5.589 12 C -0.306 4.306 13 H 0.120 0.880 14 C 0.042 3.958 15 N -0.879 5.879 16 Si 0.880 3.120 17 H -0.271 1.271 18 H -0.269 1.269 19 H -0.276 1.276 20 C 0.067 3.933 21 N -0.609 5.609 22 C 0.536 3.464 23 O -0.543 6.543 24 C -0.162 4.162 25 C 0.129 3.871 26 O -0.548 6.548 27 C -0.161 4.161 28 C -0.135 4.135 29 C -0.129 4.129 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.354 0.646 36 H 0.090 0.910 37 H 0.047 0.953 38 H 0.371 0.629 39 H 0.274 0.726 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.388 0.612 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.068 0.932 49 H 0.077 0.923 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.356 14.530 -15.787 25.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 H 0.094 0.906 4 C -0.156 4.156 5 C -0.034 4.034 6 H 0.114 0.886 7 N -0.284 5.284 8 C -0.088 4.088 9 C 0.233 3.767 10 O -0.447 6.447 11 N -0.228 5.228 12 C -0.435 4.435 13 H 0.137 0.863 14 C -0.161 4.161 15 N -0.519 5.519 16 Si 0.706 3.294 17 H -0.196 1.196 18 H -0.195 1.195 19 H -0.201 1.201 20 C -0.059 4.059 21 N -0.343 5.343 22 C 0.326 3.674 23 O -0.422 6.422 24 C -0.202 4.202 25 C 0.087 3.913 26 O -0.361 6.361 27 C -0.198 4.198 28 C -0.172 4.172 29 C -0.166 4.166 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.175 0.825 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.203 0.797 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.243 0.757 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.102 0.898 48 H 0.087 0.913 49 H 0.095 0.905 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.093 14.284 -15.473 25.339 hybrid contribution 1.435 0.595 -0.773 1.735 sum -12.658 14.879 -16.246 25.407 Atomic orbital electron populations 1.22111 0.93568 1.02877 1.03246 1.22008 0.95487 0.95498 0.84156 0.90552 1.22908 0.95263 1.00844 0.96558 1.22689 0.97585 0.94540 0.88538 0.88615 1.60154 1.06047 1.04391 1.57841 1.21799 0.88890 0.98993 0.99074 1.19655 0.83099 0.87986 0.85939 1.90578 1.50795 1.52468 1.50831 1.42206 1.05774 1.23312 1.51504 1.19426 0.93764 0.98859 1.31465 0.86257 1.25055 0.97118 0.96627 0.97348 1.69621 1.17381 1.23658 1.41254 0.86669 0.82195 0.80514 0.79982 1.19635 1.19466 1.20123 1.23129 0.87309 0.97031 0.98407 1.48624 1.27839 1.48408 1.09420 1.20310 0.83598 0.81490 0.82037 1.90503 1.25553 1.44763 1.81411 1.22374 1.01833 1.01954 0.94014 1.21802 0.94591 0.83305 0.91607 1.86343 1.88326 1.18106 1.43278 1.23569 0.99008 1.00234 0.97031 1.22742 0.95989 1.01674 0.96841 1.23070 0.97511 0.98642 0.97393 0.91916 0.89861 0.92626 0.89714 0.89239 0.82464 0.89203 0.93549 0.79674 0.91541 0.91001 0.90892 0.88166 0.87743 0.75693 0.89830 0.90599 0.89837 0.91321 0.90469 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 8.60 37.15 0.32 -1.16 16 2 C 0.13 1.15 3.76 -66.42 -0.25 0.90 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -1.04 6.19 -24.58 -0.15 -1.19 16 5 C 0.08 0.73 3.24 -65.88 -0.21 0.52 16 6 H 0.10 0.81 7.86 -51.93 -0.41 0.41 16 7 N -0.65 -8.53 5.99 -106.05 -0.64 -9.17 16 8 C 0.05 0.65 6.03 -4.98 -0.03 0.62 16 9 C 0.45 9.47 7.82 -10.98 -0.09 9.38 16 10 O -0.56 -14.42 15.78 5.55 0.09 -14.34 16 11 N -0.59 -13.30 5.09 -10.96 -0.06 -13.36 16 12 C -0.31 -8.39 10.16 -14.93 -0.15 -8.54 16 13 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 14 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 15 N -0.88 -25.13 13.96 55.50 0.77 -24.35 16 16 Si 0.88 18.67 27.74 -169.99 -4.71 13.95 16 17 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.27 -5.15 6.52 56.52 0.37 -4.79 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 C 0.07 0.55 6.21 -2.90 -0.02 0.53 16 21 N -0.61 -5.53 3.25 -162.81 -0.53 -6.06 16 22 C 0.54 5.31 7.39 -10.99 -0.08 5.23 16 23 O -0.54 -6.42 11.32 -14.26 -0.16 -6.58 16 24 C -0.16 -1.31 4.53 -27.88 -0.13 -1.44 16 25 C 0.13 1.19 1.10 -89.81 -0.10 1.09 16 26 O -0.55 -6.22 13.39 -55.04 -0.74 -6.95 16 27 C -0.16 -1.43 7.16 -25.92 -0.19 -1.62 16 28 C -0.14 -1.08 8.02 -25.92 -0.21 -1.29 16 29 C -0.13 -1.01 7.47 -25.92 -0.19 -1.20 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.90 6.10 -51.93 -0.32 0.58 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.35 4.87 7.80 -39.29 -0.31 4.56 16 36 H 0.09 1.15 8.08 -51.93 -0.42 0.73 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.37 7.27 5.76 -40.82 -0.24 7.04 16 39 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.61 7.53 -51.93 -0.39 0.22 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.10 0.72 8.05 -51.93 -0.42 0.30 16 44 H 0.39 4.32 6.20 45.56 0.28 4.60 16 45 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 46 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 397.28 15.07 5.99 5.99 Total: -1.00 -32.62 397.28 -9.23 -41.85 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -7.68 Total: 16.16 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -1.57 Total: 2.86 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.45 Total: -52.94 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.81 Total: -27.87 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.71 Total: 13.95 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.62 -9.23 -41.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717812334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.266 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds