Wall clock time and date at job start Tue Mar 31 2020 23:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.00178 * 2 1 4 4 C 1.54330 * 109.88337 * 238.89889 * 2 1 3 5 5 C 1.55161 * 102.94258 * 262.77536 * 4 2 1 6 6 H 1.09000 * 110.99942 * 82.57249 * 5 4 2 7 7 N 1.46898 * 111.00314 * 206.42217 * 5 4 2 8 8 C 1.46901 * 110.99950 * 205.00436 * 7 5 4 9 9 C 1.50696 * 109.46980 * 180.02562 * 8 7 5 10 10 O 1.21296 * 120.00126 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99881 * 180.02562 * 9 8 7 12 12 C 1.37095 * 119.99952 * 179.97438 * 11 9 8 13 13 H 1.08007 * 119.99984 * 359.97438 * 12 11 9 14 14 C 1.38944 * 120.00058 * 179.97438 * 12 11 9 15 15 N 1.31418 * 119.99990 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00282 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47275 * 89.99444 * 16 14 12 18 18 H 1.48504 * 109.47147 * 209.99960 * 16 14 12 19 19 H 1.48498 * 109.46634 * 329.99558 * 16 14 12 20 20 C 1.55125 * 101.48765 * 324.33288 * 5 4 2 21 21 N 1.47032 * 109.88020 * 121.09414 * 2 1 3 22 22 C 1.34773 * 125.64661 * 300.43862 * 21 2 1 23 23 O 1.21285 * 119.99871 * 0.02562 * 22 21 2 24 24 C 1.50696 * 119.99911 * 180.02562 * 22 21 2 25 25 C 1.53004 * 109.47199 * 185.28446 * 24 22 21 26 26 O 1.42901 * 112.84540 * 59.69562 * 25 24 22 27 27 C 1.53778 * 113.61515 * 190.89157 * 25 24 22 28 28 C 1.54051 * 86.98445 * 140.02052 * 27 25 24 29 29 C 1.53778 * 113.61477 * 288.50101 * 25 24 22 30 30 H 1.08997 * 109.47232 * 300.36288 * 1 2 3 31 31 H 1.09004 * 109.46754 * 60.36218 * 1 2 3 32 32 H 1.09006 * 109.47415 * 180.35918 * 1 2 3 33 33 H 1.09000 * 110.71822 * 21.14255 * 4 2 1 34 34 H 1.08998 * 110.71729 * 144.23844 * 4 2 1 35 35 H 1.00897 * 110.99882 * 328.95873 * 7 5 4 36 36 H 1.09003 * 109.46756 * 300.00196 * 8 7 5 37 37 H 1.08997 * 109.47467 * 59.99811 * 8 7 5 38 38 H 0.96998 * 119.99696 * 359.97438 * 11 9 8 39 39 H 0.96995 * 120.00101 * 180.02562 * 15 14 12 40 40 H 1.08997 * 110.49938 * 278.45257 * 20 5 4 41 41 H 1.09002 * 110.34333 * 156.05664 * 20 5 4 42 42 H 1.09004 * 109.47106 * 65.29062 * 24 22 21 43 43 H 1.08997 * 109.47208 * 305.28918 * 24 22 21 44 44 H 0.96701 * 113.99966 * 65.16302 * 26 25 24 45 45 H 1.09001 * 113.61282 * 254.61964 * 27 25 24 46 46 H 1.09003 * 113.61356 * 25.52147 * 27 25 24 47 47 H 1.09004 * 113.62074 * 220.01941 * 28 27 25 48 48 H 1.09004 * 113.60723 * 89.11347 * 28 27 25 49 49 H 1.08997 * 113.61572 * 334.48111 * 29 25 24 50 50 H 1.09000 * 113.61533 * 105.30182 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7497 -1.2427 5 6 2.3519 -2.1696 -0.6922 6 1 1.4451 -2.7737 -0.6602 7 7 3.3965 -2.8332 -1.4836 8 6 3.2808 -4.2945 -1.3882 9 6 4.3668 -4.9392 -2.2103 10 8 5.1590 -4.2491 -2.8165 11 7 4.4572 -6.2825 -2.2729 12 6 5.4449 -6.8690 -3.0212 13 1 6.1503 -6.2545 -3.5610 14 6 5.5384 -8.2538 -3.0853 15 7 4.6804 -9.0014 -2.4281 16 14 6.8847 -9.0529 -4.1044 17 1 8.0886 -9.2589 -3.2599 18 1 6.4075 -10.3635 -4.6144 19 1 7.2279 -8.1716 -5.2492 20 6 2.8613 -1.8466 0.7370 21 7 2.0299 -0.7141 1.1840 22 6 1.7752 -0.3844 2.4658 23 8 1.0784 0.5757 2.7180 24 6 2.3563 -1.2087 3.5855 25 6 1.8121 -0.7061 4.9243 26 8 0.3879 -0.7868 5.0097 27 6 2.5370 -1.2973 6.1449 28 6 2.4423 0.1040 6.7777 29 6 2.3781 0.6603 5.3455 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5082 -0.8933 32 1 -0.3634 -1.0277 0.0064 33 1 1.2918 -0.7892 -2.0200 34 1 2.9639 -0.2815 -1.6200 35 1 3.3686 -2.5303 -2.4456 36 1 3.3840 -4.5999 -0.3469 37 1 2.3064 -4.6072 -1.7635 38 1 3.8234 -6.8343 -1.7884 39 1 4.7459 -9.9681 -2.4725 40 1 3.9123 -1.5589 0.7116 41 1 2.7177 -2.7048 1.3934 42 1 3.4425 -1.1177 3.5778 43 1 2.0783 -2.2538 3.4495 44 1 0.0434 -1.6902 4.9925 45 1 1.9578 -2.0559 6.6715 46 1 3.5588 -1.6134 5.9350 47 1 3.3399 0.3994 7.3210 48 1 1.5282 0.2639 7.3496 49 1 3.3565 0.8783 4.9175 50 1 1.6712 1.4813 5.2258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717812336.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:12 Heat of formation + Delta-G solvation = -93.912417 kcal Electronic energy + Delta-G solvation = -29815.693551 eV Core-core repulsion = 25650.544512 eV Total energy + Delta-G solvation = -4165.149039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.73220 -39.61408 -38.36197 -37.49933 -34.83593 -34.76653 -33.83604 -32.48471 -31.29293 -30.06669 -29.87402 -26.36676 -26.03487 -26.00298 -24.31328 -23.82333 -21.98102 -20.74673 -19.95021 -19.41080 -19.09830 -17.94651 -17.30497 -16.73106 -16.30484 -15.93976 -15.84858 -15.49585 -15.22658 -15.09871 -14.75093 -14.52149 -14.10934 -13.91191 -13.67605 -13.51247 -13.47008 -13.25362 -12.95742 -12.74327 -12.58237 -12.46087 -12.18325 -12.00801 -11.88495 -11.71908 -11.57321 -11.45103 -11.22413 -11.17406 -11.16425 -11.06472 -10.75785 -10.44632 -10.43307 -10.26529 -10.12263 -9.66565 -9.56112 -8.76659 -8.54912 -8.21651 -8.01875 -6.46807 -3.87814 2.58251 2.77147 3.14293 3.23468 3.29014 3.78802 3.84091 3.95056 4.10708 4.23403 4.31568 4.33543 4.39921 4.45970 4.56729 4.76733 4.85601 4.98686 5.02077 5.10775 5.17517 5.18786 5.21506 5.28918 5.31910 5.40111 5.40937 5.45010 5.50135 5.58934 5.65550 5.66857 5.72979 5.84651 5.89302 5.90448 5.91059 5.93626 6.05160 6.10291 6.20080 6.30069 7.08773 7.40531 7.43934 7.50462 7.51470 8.00689 8.12586 8.55266 9.12628 9.48333 9.99317 10.70809 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.002136 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.754987 B =13105.189024 C =14409.226279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.075 0.925 4 C -0.133 4.133 5 C 0.075 3.925 6 H 0.062 0.938 7 N -0.657 5.657 8 C 0.050 3.950 9 C 0.440 3.560 10 O -0.583 6.583 11 N -0.563 5.563 12 C -0.300 4.300 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.901 5.901 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.269 1.269 20 C 0.108 3.892 21 N -0.619 5.619 22 C 0.532 3.468 23 O -0.522 6.522 24 C -0.157 4.157 25 C 0.127 3.873 26 O -0.528 6.528 27 C -0.167 4.167 28 C -0.137 4.137 29 C -0.118 4.118 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.356 0.644 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.372 0.628 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.068 0.932 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.602 14.172 13.877 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.171 4.171 5 C -0.036 4.036 6 H 0.080 0.920 7 N -0.291 5.291 8 C -0.083 4.083 9 C 0.225 3.775 10 O -0.467 6.467 11 N -0.199 5.199 12 C -0.429 4.429 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.016 4.016 21 N -0.354 5.354 22 C 0.320 3.680 23 O -0.398 6.398 24 C -0.197 4.197 25 C 0.085 3.915 26 O -0.332 6.332 27 C -0.205 4.205 28 C -0.175 4.175 29 C -0.155 4.155 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.177 0.823 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.122 0.878 43 H 0.111 0.889 44 H 0.219 0.781 45 H 0.091 0.909 46 H 0.108 0.892 47 H 0.087 0.913 48 H 0.101 0.899 49 H 0.106 0.894 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.945 15.661 14.205 22.587 hybrid contribution -0.469 -1.920 -0.851 2.152 sum -8.414 13.740 13.354 20.927 Atomic orbital electron populations 1.22147 0.94744 1.02224 1.02920 1.21447 0.94580 0.96213 0.84147 0.90742 1.22946 1.02429 0.95066 0.96686 1.22665 0.93101 0.94360 0.93522 0.92001 1.59971 1.46782 1.05018 1.17281 1.21754 0.97408 0.88067 1.01055 1.19767 0.88121 0.83109 0.86505 1.90532 1.44675 1.62451 1.49065 1.41866 1.29402 1.04544 1.44110 1.19701 1.08348 0.89956 1.24920 0.87887 1.25270 0.98437 0.96269 0.97950 1.69609 1.36418 1.05947 1.42298 0.85854 0.80285 0.78322 0.79820 1.20354 1.20923 1.19403 1.22432 0.95618 0.88358 0.95181 1.48627 1.50984 1.30822 1.05016 1.20091 0.80759 0.85260 0.81877 1.90712 1.37724 1.28406 1.82913 1.22316 1.02705 1.00734 0.93995 1.21881 0.81515 0.97704 0.90401 1.86620 1.18432 1.31869 1.96272 1.23732 1.01563 0.97769 0.97449 1.22834 1.02170 0.95810 0.96672 1.22891 1.00836 0.96538 0.95256 0.90992 0.91878 0.92667 0.89886 0.89316 0.82303 0.89623 0.93652 0.77464 0.91831 0.89834 0.90942 0.87826 0.88871 0.78093 0.90851 0.89172 0.91344 0.89874 0.89396 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.06 37.15 0.34 -1.31 16 2 C 0.14 1.45 3.49 -66.95 -0.23 1.22 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -1.27 5.89 -24.89 -0.15 -1.42 16 5 C 0.07 0.82 3.40 -65.45 -0.22 0.59 16 6 H 0.06 0.66 7.83 -51.93 -0.41 0.26 16 7 N -0.66 -9.36 6.03 -105.60 -0.64 -10.00 16 8 C 0.05 0.80 6.03 -4.98 -0.03 0.77 16 9 C 0.44 9.84 7.82 -10.98 -0.09 9.75 16 10 O -0.58 -15.17 15.78 5.54 0.09 -15.09 16 11 N -0.56 -13.72 5.29 -10.96 -0.06 -13.77 16 12 C -0.30 -8.14 9.68 -14.94 -0.14 -8.28 16 13 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -23.94 13.05 55.50 0.72 -23.22 16 16 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 C 0.11 1.12 6.40 -2.41 -0.02 1.10 16 21 N -0.62 -6.71 3.08 -162.87 -0.50 -7.21 16 22 C 0.53 6.23 7.41 -10.99 -0.08 6.15 16 23 O -0.52 -7.78 13.84 -8.97 -0.12 -7.91 16 24 C -0.16 -1.36 4.42 -27.88 -0.12 -1.48 16 25 C 0.13 1.14 0.94 -89.81 -0.08 1.06 16 26 O -0.53 -5.45 12.58 -49.75 -0.63 -6.08 16 27 C -0.17 -1.18 7.49 -25.78 -0.19 -1.37 16 28 C -0.14 -1.06 8.03 -25.78 -0.21 -1.27 16 29 C -0.12 -1.12 6.64 -25.92 -0.17 -1.29 16 30 H 0.07 0.88 6.74 -51.93 -0.35 0.53 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.70 7.83 -51.93 -0.41 0.29 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.36 5.27 8.14 -39.29 -0.32 4.95 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 38 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.67 7.32 -51.93 -0.38 0.29 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.67 7.61 -51.93 -0.40 0.27 16 44 H 0.37 2.40 9.12 45.56 0.42 2.81 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 50 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 404.51 15.07 6.10 6.10 Total: -1.00 -33.15 404.51 -9.15 -42.30 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -7.59 Total: 14.59 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.50 Total: 4.71 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.47 Total: -54.20 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.66 Total: -29.07 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.15 -9.15 -42.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717812336.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.613 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds