Wall clock time and date at job start Tue Mar 31 2020 23:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 115.56191 * 2 1 4 4 C 1.53074 * 117.49417 * 214.28861 * 2 1 3 5 5 C 1.52999 * 59.98788 * 252.51622 * 4 2 1 6 6 H 1.08996 * 117.49626 * 107.49912 * 5 4 2 7 7 C 1.50694 * 117.49722 * 252.49989 * 5 4 2 8 8 O 1.21279 * 120.00207 * 68.74789 * 7 5 4 9 9 N 1.34778 * 120.00038 * 248.74343 * 7 5 4 10 10 C 1.46924 * 120.62862 * 0.02562 * 9 7 5 11 11 C 1.53191 * 108.77693 * 233.58511 * 10 9 7 12 12 C 1.53038 * 109.31345 * 305.36781 * 11 10 9 13 13 C 1.53041 * 109.53809 * 61.36415 * 12 11 10 14 14 C 1.53002 * 109.49627 * 178.64975 * 13 12 11 15 15 O 1.42902 * 109.47036 * 294.72593 * 14 13 12 16 16 N 1.46897 * 109.49711 * 58.58401 * 13 12 11 17 17 C 1.46906 * 111.00011 * 174.69533 * 16 13 12 18 18 C 1.50699 * 109.46796 * 180.35436 * 17 16 13 19 19 O 1.21288 * 120.00344 * 0.02562 * 18 17 16 20 20 N 1.34785 * 119.99583 * 180.27626 * 18 17 16 21 21 C 1.37093 * 119.99960 * 179.72785 * 20 18 17 22 22 H 1.08005 * 119.99983 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00161 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99940 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00368 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46801 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47111 * 119.99543 * 25 23 21 28 28 H 1.48499 * 109.47219 * 240.00068 * 25 23 21 29 29 C 1.46923 * 120.63173 * 179.97438 * 9 7 5 30 30 H 1.09003 * 109.47114 * 274.30588 * 1 2 3 31 31 H 1.08993 * 109.46902 * 34.31300 * 1 2 3 32 32 H 1.09000 * 109.46959 * 154.31126 * 1 2 3 33 33 H 1.09001 * 117.51510 * 145.03605 * 4 2 1 34 34 H 1.09007 * 117.49472 * 0.02562 * 4 2 1 35 35 H 1.09003 * 109.58370 * 113.80073 * 10 9 7 36 36 H 1.08999 * 109.70842 * 353.44955 * 10 9 7 37 37 H 1.09000 * 109.49724 * 185.41298 * 11 10 9 38 38 H 1.08999 * 109.52221 * 65.33614 * 11 10 9 39 39 H 1.09006 * 109.46316 * 301.34410 * 12 11 10 40 40 H 1.09006 * 109.45060 * 181.37668 * 12 11 10 41 41 H 1.09000 * 109.47230 * 54.72799 * 14 13 12 42 42 H 1.09002 * 109.47011 * 174.72854 * 14 13 12 43 43 H 0.96702 * 113.99012 * 180.02562 * 15 14 13 44 44 H 1.00893 * 111.00213 * 298.65122 * 16 13 12 45 45 H 1.08991 * 109.47046 * 60.35546 * 17 16 13 46 46 H 1.09002 * 109.46901 * 300.35375 * 17 16 13 47 47 H 0.96995 * 119.99942 * 359.72638 * 20 18 17 48 48 H 0.96997 * 119.99750 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.58590 * 6.62573 * 29 9 7 50 50 H 1.09001 * 109.58870 * 246.20322 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2367 -1.1219 -0.7650 5 6 2.2365 -1.1211 0.7650 6 1 1.6112 -1.8583 1.2685 7 6 3.5293 -0.7812 1.4608 8 8 3.9710 0.3468 1.4026 9 7 4.1946 -1.7308 2.1479 10 6 3.6724 -3.1018 2.2271 11 6 3.5786 -3.5093 3.7008 12 6 4.9428 -3.3169 4.3671 13 6 5.3423 -1.8411 4.2985 14 6 6.6905 -1.6442 4.9944 15 8 6.5532 -1.9283 6.3882 16 7 4.3209 -1.0251 4.9684 17 6 4.7316 0.3839 5.0327 18 6 3.6653 1.1864 5.7326 19 8 2.6621 0.6386 6.1383 20 7 3.8241 2.5140 5.9032 21 6 2.8515 3.2451 6.5349 22 1 1.9579 2.7574 6.8955 23 6 3.0149 4.6137 6.7104 24 7 4.1021 5.2072 6.2712 25 14 1.6895 5.6101 7.5705 26 1 0.5742 4.7129 7.9659 27 1 2.2608 6.2534 8.7808 28 1 1.1794 6.6560 6.6479 29 6 5.4565 -1.4149 2.8310 30 1 -0.3633 0.0772 1.0248 31 1 -0.3633 0.8488 -0.5793 32 1 -0.3633 -0.9261 -0.4455 33 1 3.1719 -0.8767 -1.2683 34 1 1.6113 -1.8593 -1.2683 35 1 4.3455 -3.7801 1.7026 36 1 2.6828 -3.1451 1.7722 37 1 3.2840 -4.5565 3.7707 38 1 2.8372 -2.8886 4.2039 39 1 5.6885 -3.9194 3.8484 40 1 4.8848 -3.6293 5.4098 41 1 7.4271 -2.3182 4.5571 42 1 7.0193 -0.6131 4.8645 43 1 7.3711 -1.8234 6.8933 44 1 3.4258 -1.1203 4.5126 45 1 4.8712 0.7681 4.0224 46 1 5.6681 0.4645 5.5847 47 1 4.6265 2.9520 5.5791 48 1 4.2163 6.1626 6.3940 49 1 5.6436 -0.3425 2.7752 50 1 6.2747 -1.9559 2.3556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724909603.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:28 Heat of formation + Delta-G solvation = -85.295047 kcal Electronic energy + Delta-G solvation = -31598.989467 eV Core-core repulsion = 27434.214105 eV Total energy + Delta-G solvation = -4164.775362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.82596 -39.09690 -37.81762 -36.84218 -36.24248 -34.48782 -33.70808 -32.41477 -31.11564 -30.51139 -28.93051 -26.47207 -26.36902 -25.79435 -23.93868 -23.34939 -22.21836 -20.96352 -19.38004 -19.19349 -18.59923 -17.80574 -17.50674 -17.32313 -16.41760 -16.12654 -15.64331 -15.01215 -14.83789 -14.64328 -14.50242 -14.28575 -14.07837 -13.92601 -13.76167 -13.51126 -13.29013 -13.16686 -12.93833 -12.86743 -12.64219 -12.28766 -12.08724 -12.05075 -11.77074 -11.56205 -11.43476 -11.27508 -10.99483 -10.96273 -10.81961 -10.52087 -10.44553 -10.27195 -10.14410 -10.12381 -9.86681 -9.76093 -9.41119 -8.86080 -8.29135 -7.86538 -7.80122 -6.30924 -3.71026 2.43776 2.78246 3.23298 3.32584 3.40448 3.65597 4.05175 4.08704 4.23563 4.29536 4.46125 4.51357 4.60003 4.64721 4.71158 4.84359 4.92257 5.03253 5.16384 5.19540 5.22222 5.25779 5.28551 5.33516 5.41659 5.43753 5.51840 5.52295 5.57448 5.62439 5.64996 5.66939 5.74731 5.90250 5.97889 6.02636 6.13866 6.20094 6.22575 6.30209 6.36234 6.42445 7.26992 7.37054 7.65265 7.70931 7.81694 8.14718 8.18068 8.73705 9.29191 9.67075 10.19225 10.87299 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008706 B = 0.004139 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.502480 B = 6763.406322 C = 9041.754657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.119 4.119 3 H 0.118 0.882 4 C -0.149 4.149 5 C -0.191 4.191 6 H 0.125 0.875 7 C 0.544 3.456 8 O -0.530 6.530 9 N -0.607 5.607 10 C 0.106 3.894 11 C -0.142 4.142 12 C -0.098 4.098 13 C 0.103 3.897 14 C 0.090 3.910 15 O -0.546 6.546 16 N -0.635 5.635 17 C 0.045 3.955 18 C 0.449 3.551 19 O -0.584 6.584 20 N -0.565 5.565 21 C -0.295 4.295 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.269 1.269 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.079 3.921 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.048 0.952 43 H 0.372 0.628 44 H 0.346 0.654 45 H 0.046 0.954 46 H 0.086 0.914 47 H 0.391 0.609 48 H 0.269 0.731 49 H 0.098 0.902 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.555 -18.525 -13.183 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.137 4.137 3 H 0.136 0.864 4 C -0.187 4.187 5 C -0.212 4.212 6 H 0.143 0.857 7 C 0.332 3.668 8 O -0.406 6.406 9 N -0.340 5.340 10 C -0.017 4.017 11 C -0.180 4.180 12 C -0.136 4.136 13 C 0.010 3.990 14 C 0.010 3.990 15 O -0.349 6.349 16 N -0.268 5.268 17 C -0.088 4.088 18 C 0.234 3.766 19 O -0.468 6.468 20 N -0.202 5.202 21 C -0.424 4.424 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.193 1.193 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.046 4.046 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.217 0.783 44 H 0.168 0.832 45 H 0.064 0.936 46 H 0.104 0.896 47 H 0.224 0.776 48 H 0.079 0.921 49 H 0.116 0.884 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.743 -18.337 -12.472 22.345 hybrid contribution 0.517 1.169 -0.481 1.366 sum 3.260 -17.167 -12.953 21.751 Atomic orbital electron populations 1.21405 0.92104 1.01989 1.02628 1.22407 0.95402 0.95141 1.00786 0.86395 1.23096 1.03080 1.01863 0.90646 1.22301 0.97764 1.05622 0.95494 0.85727 1.19717 0.84585 0.84227 0.78242 1.90732 1.68311 1.20538 1.61061 1.47878 1.23825 1.10444 1.51902 1.21839 1.00013 0.82262 0.97555 1.21996 0.99094 1.02181 0.94765 1.21444 0.96047 0.93701 1.02416 1.21338 0.92725 0.95205 0.89731 1.22059 0.94954 0.98968 0.82973 1.86672 1.37520 1.92089 1.18622 1.60248 1.04086 1.06824 1.55609 1.21766 0.99066 0.88737 0.99182 1.19757 0.88679 0.82923 0.85236 1.90498 1.31210 1.70499 1.54613 1.41835 1.20596 1.05840 1.51933 1.19733 1.00268 0.89782 1.32663 0.88004 1.25239 0.97732 0.96974 0.98101 1.69632 1.26574 1.11265 1.47014 0.85819 0.80544 0.79393 0.78686 1.19281 1.20807 1.20839 1.22311 0.85681 1.03475 0.93153 0.91568 0.91614 0.92502 0.88476 0.87876 0.91350 0.89454 0.90453 0.90312 0.91968 0.89694 0.93647 0.93434 0.78258 0.83238 0.93604 0.89632 0.77575 0.92070 0.88389 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 10.19 37.16 0.38 -0.81 16 2 C -0.12 -1.37 5.92 -90.58 -0.54 -1.90 16 3 H 0.12 1.64 7.67 -51.93 -0.40 1.24 16 4 C -0.15 -1.38 9.88 -26.69 -0.26 -1.64 16 5 C -0.19 -2.17 4.84 -91.77 -0.44 -2.61 16 6 H 0.12 1.19 6.57 -51.93 -0.34 0.85 16 7 C 0.54 7.95 7.48 -10.99 -0.08 7.87 16 8 O -0.53 -10.03 15.67 5.56 0.09 -9.94 16 9 N -0.61 -7.41 2.45 -172.74 -0.42 -7.83 16 10 C 0.11 0.94 6.34 -3.71 -0.02 0.91 16 11 C -0.14 -1.39 5.76 -26.61 -0.15 -1.54 16 12 C -0.10 -1.07 4.80 -26.69 -0.13 -1.20 16 13 C 0.10 1.34 0.47 -131.45 -0.06 1.28 16 14 C 0.09 1.05 5.20 37.16 0.19 1.24 16 15 O -0.55 -7.15 12.92 -35.23 -0.46 -7.61 16 16 N -0.63 -11.24 5.37 -101.07 -0.54 -11.78 16 17 C 0.04 0.90 5.37 -4.97 -0.03 0.87 16 18 C 0.45 11.60 7.82 -10.98 -0.09 11.51 16 19 O -0.58 -17.00 15.79 5.55 0.09 -16.91 16 20 N -0.57 -15.49 5.29 -10.96 -0.06 -15.55 16 21 C -0.29 -8.71 9.68 -14.94 -0.14 -8.85 16 22 H 0.10 3.15 7.16 -52.48 -0.38 2.77 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -25.82 13.05 55.50 0.72 -25.09 16 25 Si 0.93 22.02 29.55 -169.99 -5.02 16.99 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 29 C 0.08 0.98 5.06 -3.69 -0.02 0.96 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.10 0.70 8.05 -51.93 -0.42 0.29 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.65 5.52 -51.93 -0.29 0.36 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.98 6.62 -51.93 -0.34 0.64 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 1.08 7.80 -51.93 -0.40 0.67 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.57 6.64 -51.93 -0.35 0.22 16 43 H 0.37 3.17 9.12 45.56 0.42 3.59 16 44 H 0.35 6.60 6.11 -39.30 -0.24 6.36 16 45 H 0.05 0.92 6.36 -51.93 -0.33 0.59 16 46 H 0.09 1.60 6.30 -51.93 -0.33 1.28 16 47 H 0.39 10.37 7.90 -40.82 -0.32 10.05 16 48 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.10 1.48 5.18 -51.93 -0.27 1.22 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -36.77 394.08 -8.07 -44.85 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -6.91 Total: 20.35 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -1.49 Total: 6.58 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.30 Total: -60.25 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.28 Total: -34.46 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.77 -8.07 -44.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724909603.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.448 kcal (2) G-P(sol) polarization free energy of solvation -36.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds