Wall clock time and date at job start Tue Mar 31 2020 23:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 115.56191 * 2 1 4 4 C 1.53074 * 117.49417 * 214.28861 * 2 1 3 5 5 C 1.52999 * 59.98788 * 252.51622 * 4 2 1 6 6 H 1.08996 * 117.49626 * 107.49912 * 5 4 2 7 7 C 1.50694 * 117.49722 * 252.49989 * 5 4 2 8 8 O 1.21279 * 120.00207 * 68.74789 * 7 5 4 9 9 N 1.34778 * 120.00038 * 248.74343 * 7 5 4 10 10 C 1.46924 * 120.62862 * 0.02562 * 9 7 5 11 11 C 1.53191 * 108.77693 * 233.58511 * 10 9 7 12 12 C 1.53038 * 109.31345 * 305.36781 * 11 10 9 13 13 C 1.53041 * 109.53809 * 61.36415 * 12 11 10 14 14 C 1.53002 * 109.49627 * 178.64975 * 13 12 11 15 15 O 1.42902 * 109.47036 * 294.72593 * 14 13 12 16 16 N 1.46897 * 109.49711 * 58.58401 * 13 12 11 17 17 C 1.46906 * 111.00011 * 174.69533 * 16 13 12 18 18 C 1.50699 * 109.46796 * 180.35436 * 17 16 13 19 19 O 1.21288 * 120.00344 * 0.02562 * 18 17 16 20 20 N 1.34785 * 119.99583 * 180.27626 * 18 17 16 21 21 C 1.37093 * 119.99960 * 179.72785 * 20 18 17 22 22 H 1.08005 * 119.99983 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00161 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99940 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00368 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46801 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47111 * 119.99543 * 25 23 21 28 28 H 1.48499 * 109.47219 * 240.00068 * 25 23 21 29 29 C 1.46923 * 120.63173 * 179.97438 * 9 7 5 30 30 H 1.09003 * 109.47114 * 274.30588 * 1 2 3 31 31 H 1.08993 * 109.46902 * 34.31300 * 1 2 3 32 32 H 1.09000 * 109.46959 * 154.31126 * 1 2 3 33 33 H 1.09001 * 117.51510 * 145.03605 * 4 2 1 34 34 H 1.09007 * 117.49472 * 0.02562 * 4 2 1 35 35 H 1.09003 * 109.58370 * 113.80073 * 10 9 7 36 36 H 1.08999 * 109.70842 * 353.44955 * 10 9 7 37 37 H 1.09000 * 109.49724 * 185.41298 * 11 10 9 38 38 H 1.08999 * 109.52221 * 65.33614 * 11 10 9 39 39 H 1.09006 * 109.46316 * 301.34410 * 12 11 10 40 40 H 1.09006 * 109.45060 * 181.37668 * 12 11 10 41 41 H 1.09000 * 109.47230 * 54.72799 * 14 13 12 42 42 H 1.09002 * 109.47011 * 174.72854 * 14 13 12 43 43 H 0.96702 * 113.99012 * 180.02562 * 15 14 13 44 44 H 1.00893 * 111.00213 * 298.65122 * 16 13 12 45 45 H 1.08991 * 109.47046 * 60.35546 * 17 16 13 46 46 H 1.09002 * 109.46901 * 300.35375 * 17 16 13 47 47 H 0.96995 * 119.99942 * 359.72638 * 20 18 17 48 48 H 0.96997 * 119.99750 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.58590 * 6.62573 * 29 9 7 50 50 H 1.09001 * 109.58870 * 246.20322 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2367 -1.1219 -0.7650 5 6 2.2365 -1.1211 0.7650 6 1 1.6112 -1.8583 1.2685 7 6 3.5293 -0.7812 1.4608 8 8 3.9710 0.3468 1.4026 9 7 4.1946 -1.7308 2.1479 10 6 3.6724 -3.1018 2.2271 11 6 3.5786 -3.5093 3.7008 12 6 4.9428 -3.3169 4.3671 13 6 5.3423 -1.8411 4.2985 14 6 6.6905 -1.6442 4.9944 15 8 6.5532 -1.9283 6.3882 16 7 4.3209 -1.0251 4.9684 17 6 4.7316 0.3839 5.0327 18 6 3.6653 1.1864 5.7326 19 8 2.6621 0.6386 6.1383 20 7 3.8241 2.5140 5.9032 21 6 2.8515 3.2451 6.5349 22 1 1.9579 2.7574 6.8955 23 6 3.0149 4.6137 6.7104 24 7 4.1021 5.2072 6.2712 25 14 1.6895 5.6101 7.5705 26 1 0.5742 4.7129 7.9659 27 1 2.2608 6.2534 8.7808 28 1 1.1794 6.6560 6.6479 29 6 5.4565 -1.4149 2.8310 30 1 -0.3633 0.0772 1.0248 31 1 -0.3633 0.8488 -0.5793 32 1 -0.3633 -0.9261 -0.4455 33 1 3.1719 -0.8767 -1.2683 34 1 1.6113 -1.8593 -1.2683 35 1 4.3455 -3.7801 1.7026 36 1 2.6828 -3.1451 1.7722 37 1 3.2840 -4.5565 3.7707 38 1 2.8372 -2.8886 4.2039 39 1 5.6885 -3.9194 3.8484 40 1 4.8848 -3.6293 5.4098 41 1 7.4271 -2.3182 4.5571 42 1 7.0193 -0.6131 4.8645 43 1 7.3711 -1.8234 6.8933 44 1 3.4258 -1.1203 4.5126 45 1 4.8712 0.7681 4.0224 46 1 5.6681 0.4645 5.5847 47 1 4.6265 2.9520 5.5791 48 1 4.2163 6.1626 6.3940 49 1 5.6436 -0.3425 2.7752 50 1 6.2747 -1.9559 2.3556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724909603.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:27 Heat of formation + Delta-G solvation = -115.311174 kcal Electronic energy + Delta-G solvation = -31600.291064 eV Core-core repulsion = 27434.214105 eV Total energy + Delta-G solvation = -4166.076959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.86327 -40.39449 -39.61666 -37.77985 -37.24586 -36.13843 -35.46070 -33.50071 -33.22554 -31.71577 -29.75419 -28.17466 -27.29667 -26.86104 -25.79581 -24.23078 -23.13985 -21.80507 -21.18417 -20.38749 -19.99144 -19.60244 -18.50667 -18.30190 -17.97647 -17.16881 -17.15033 -16.59437 -16.18434 -16.04942 -15.83568 -15.53463 -15.41741 -15.22752 -14.96175 -14.59380 -14.39784 -14.27692 -14.14198 -13.87775 -13.71750 -13.60026 -13.53141 -13.17581 -13.12715 -12.93921 -12.87054 -12.46849 -12.43843 -12.36477 -12.13928 -11.89287 -11.74747 -11.55810 -11.41613 -11.34649 -10.96559 -10.82709 -10.80030 -10.40188 -10.06636 -9.88821 -9.18757 -8.50247 -5.99996 1.33299 1.37142 1.39334 1.53000 1.86177 1.98878 2.25920 2.77673 2.85452 3.15538 3.29710 3.42769 3.48809 3.68299 3.74058 3.80726 3.83711 4.04090 4.10113 4.14277 4.24927 4.27453 4.32586 4.37768 4.40641 4.43150 4.50668 4.58304 4.62954 4.68736 4.76325 4.79603 4.84251 4.85813 4.89933 5.00824 5.08975 5.18379 5.34852 5.35871 5.36826 5.41486 5.46607 5.86756 6.08891 6.28883 6.34882 6.54474 7.01712 7.07180 7.09817 7.49158 8.04430 8.67960 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008706 B = 0.004139 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.502480 B = 6763.406322 C = 9041.754657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.144 4.144 3 H 0.080 0.920 4 C -0.115 4.115 5 C -0.198 4.198 6 H 0.147 0.853 7 C 0.530 3.470 8 O -0.590 6.590 9 N -0.603 5.603 10 C 0.104 3.896 11 C -0.139 4.139 12 C -0.093 4.093 13 C 0.098 3.902 14 C 0.087 3.913 15 O -0.572 6.572 16 N -0.645 5.645 17 C 0.069 3.931 18 C 0.440 3.560 19 O -0.621 6.621 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.998 3.002 26 H -0.273 1.273 27 H -0.266 1.266 28 H -0.269 1.269 29 C 0.081 3.919 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.141 0.859 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.043 0.957 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.038 0.962 43 H 0.390 0.610 44 H 0.335 0.665 45 H 0.043 0.957 46 H 0.100 0.900 47 H 0.393 0.607 48 H 0.278 0.722 49 H 0.065 0.935 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 -20.917 -14.357 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.163 4.163 3 H 0.098 0.902 4 C -0.152 4.152 5 C -0.219 4.219 6 H 0.164 0.836 7 C 0.320 3.680 8 O -0.470 6.470 9 N -0.335 5.335 10 C -0.017 4.017 11 C -0.177 4.177 12 C -0.130 4.130 13 C 0.006 3.994 14 C 0.008 3.992 15 O -0.378 6.378 16 N -0.277 5.277 17 C -0.064 4.064 18 C 0.227 3.773 19 O -0.508 6.508 20 N -0.209 5.209 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.820 3.180 26 H -0.197 1.197 27 H -0.191 1.191 28 H -0.195 1.195 29 C -0.044 4.044 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.159 0.841 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.062 0.938 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.057 0.943 43 H 0.238 0.762 44 H 0.155 0.845 45 H 0.060 0.940 46 H 0.118 0.882 47 H 0.226 0.774 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.080 -20.775 -13.644 25.044 hybrid contribution 0.497 1.881 -0.096 1.948 sum 3.577 -18.894 -13.740 23.634 Atomic orbital electron populations 1.21375 0.90543 1.03638 1.01936 1.22393 0.96626 0.94155 1.03086 0.90179 1.23191 1.02642 1.00485 0.88916 1.22379 0.96456 1.06021 0.97050 0.83557 1.20382 0.85477 0.83785 0.78314 1.90701 1.69939 1.22955 1.63434 1.48035 1.23396 1.11498 1.50558 1.22137 1.01751 0.80545 0.97284 1.21977 0.97542 1.03275 0.94887 1.21440 0.97643 0.92034 1.01929 1.21607 0.92176 0.95808 0.89786 1.22165 0.94823 0.99550 0.82635 1.86617 1.39468 1.92181 1.19572 1.60290 1.04971 1.05412 1.57019 1.21481 0.97135 0.89654 0.98125 1.20783 0.89367 0.82720 0.84413 1.90453 1.33103 1.71133 1.56107 1.41924 1.20380 1.06523 1.52121 1.19720 1.00649 0.90972 1.35093 0.90378 1.26130 1.00018 0.97246 0.98007 1.69702 1.27737 1.12036 1.46821 0.84816 0.77462 0.77618 0.78060 1.19711 1.19135 1.19465 1.22264 0.87012 1.01993 0.93157 0.93204 0.91376 0.89642 0.89088 0.84146 0.88016 0.87814 0.87453 0.93793 0.88482 0.91616 0.89732 0.94342 0.76165 0.84516 0.93950 0.88229 0.77384 0.91233 0.91692 0.87877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 10.19 71.98 0.73 -1.46 16 2 C -0.14 -3.37 5.92 -10.77 -0.06 -3.43 16 3 H 0.08 2.47 7.67 -2.39 -0.02 2.45 16 4 C -0.12 -1.89 9.88 30.62 0.30 -1.59 16 5 C -0.20 -4.37 4.84 -11.54 -0.06 -4.42 16 6 H 0.15 2.51 6.57 -2.39 -0.02 2.49 16 7 C 0.53 15.81 7.48 87.65 0.66 16.47 16 8 O -0.59 -23.84 15.67 -3.03 -0.05 -23.88 16 9 N -0.60 -14.07 2.45 -818.82 -2.01 -16.08 16 10 C 0.10 1.50 6.34 86.36 0.55 2.05 16 11 C -0.14 -2.37 5.76 30.67 0.18 -2.20 16 12 C -0.09 -1.78 4.80 30.62 0.15 -1.63 16 13 C 0.10 2.45 0.47 3.62 0.00 2.46 16 14 C 0.09 1.89 5.20 71.98 0.37 2.26 16 15 O -0.57 -14.38 12.92 -148.98 -1.93 -16.31 16 16 N -0.64 -23.45 5.37 -473.67 -2.54 -25.99 16 17 C 0.07 2.87 5.37 85.56 0.46 3.33 16 18 C 0.44 23.99 7.82 87.66 0.69 24.68 16 19 O -0.62 -38.16 15.79 -3.05 -0.05 -38.21 16 20 N -0.57 -33.01 5.29 -306.98 -1.62 -34.64 16 21 C -0.33 -20.64 9.68 84.04 0.81 -19.83 16 22 H 0.08 5.10 7.16 -2.91 -0.02 5.08 16 23 C -0.01 -0.84 5.50 84.92 0.47 -0.37 16 24 N -0.92 -53.22 13.05 21.66 0.28 -52.94 16 25 Si 1.00 45.53 29.55 68.60 2.03 47.55 16 26 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 29 C 0.08 1.93 5.06 86.38 0.44 2.37 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.08 7.90 -2.39 -0.02 1.06 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.14 1.29 8.05 -2.38 -0.02 1.27 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 1.18 5.52 -2.39 -0.01 1.17 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.04 1.08 6.62 -2.39 -0.02 1.06 16 39 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.07 1.56 7.80 -2.38 -0.02 1.54 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.04 0.89 6.64 -2.39 -0.02 0.88 16 43 H 0.39 6.19 9.12 -74.06 -0.68 5.51 16 44 H 0.34 13.35 6.11 -89.70 -0.55 12.80 16 45 H 0.04 1.82 6.36 -2.39 -0.02 1.81 16 46 H 0.10 3.86 6.30 -2.39 -0.02 3.85 16 47 H 0.39 21.89 7.90 -92.71 -0.73 21.15 16 48 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 49 H 0.06 2.03 5.18 -2.39 -0.01 2.02 16 50 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -85.94 394.08 -1.16 -87.10 By element: Atomic # 1 Polarization: 55.67 SS G_CDS: -0.96 Total: 54.71 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 5.68 Total: 18.69 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -5.89 Total: -129.65 kcal Atomic # 8 Polarization: -76.38 SS G_CDS: -2.02 Total: -78.40 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -85.94 -1.16 -87.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724909603.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.209 kcal (2) G-P(sol) polarization free energy of solvation -85.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds