Wall clock time and date at job start Tue Mar 31 2020 23:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 115.56399 * 2 1 4 4 C 1.53004 * 117.49387 * 214.31181 * 2 1 3 5 5 C 1.53001 * 60.00226 * 252.50912 * 4 2 1 6 6 H 1.08996 * 117.49366 * 107.48931 * 5 4 2 7 7 C 1.50689 * 117.50187 * 252.51412 * 5 4 2 8 8 O 1.21283 * 120.00477 * 68.60351 * 7 5 4 9 9 N 1.34775 * 120.00081 * 248.61059 * 7 5 4 10 10 C 1.46930 * 120.62723 * 359.71272 * 9 7 5 11 11 C 1.53630 * 108.54180 * 126.37416 * 10 9 7 12 12 C 1.53035 * 109.24223 * 54.85481 * 11 10 9 13 13 C 1.53040 * 109.54221 * 298.51167 * 12 11 10 14 14 C 1.52990 * 109.50126 * 181.31469 * 13 12 11 15 15 O 1.42904 * 109.47027 * 65.25236 * 14 13 12 16 16 N 1.46895 * 109.52383 * 301.40251 * 13 12 11 17 17 C 1.46897 * 111.00039 * 184.75345 * 16 13 12 18 18 C 1.50701 * 109.47013 * 185.66254 * 17 16 13 19 19 O 1.21286 * 120.00164 * 0.02562 * 18 17 16 20 20 N 1.34789 * 119.99911 * 179.97438 * 18 17 16 21 21 C 1.37091 * 119.99750 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00602 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99762 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00294 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00166 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47242 * 89.99991 * 25 23 21 27 27 H 1.48502 * 109.47281 * 209.99999 * 25 23 21 28 28 H 1.48498 * 109.47335 * 329.99870 * 25 23 21 29 29 C 1.46924 * 120.63657 * 179.97438 * 9 7 5 30 30 H 1.09005 * 109.46611 * 274.30890 * 1 2 3 31 31 H 1.09000 * 109.46632 * 34.30795 * 1 2 3 32 32 H 1.08998 * 109.47241 * 154.30890 * 1 2 3 33 33 H 1.08996 * 117.49795 * 145.02057 * 4 2 1 34 34 H 1.08999 * 117.50332 * 0.02562 * 4 2 1 35 35 H 1.09001 * 109.58712 * 246.20370 * 10 9 7 36 36 H 1.08997 * 109.58814 * 6.63568 * 10 9 7 37 37 H 1.08996 * 109.63076 * 294.86354 * 11 10 9 38 38 H 1.09002 * 109.45492 * 174.74071 * 11 10 9 39 39 H 1.08996 * 109.45979 * 178.49261 * 12 11 10 40 40 H 1.09004 * 109.45121 * 58.52791 * 12 11 10 41 41 H 1.08996 * 109.47537 * 185.25473 * 14 13 12 42 42 H 1.08998 * 109.47559 * 305.25336 * 14 13 12 43 43 H 0.96699 * 114.00138 * 180.02562 * 15 14 13 44 44 H 1.00900 * 110.99794 * 308.70482 * 16 13 12 45 45 H 1.09005 * 109.46982 * 305.66194 * 17 16 13 46 46 H 1.08997 * 109.47377 * 65.66648 * 17 16 13 47 47 H 0.96995 * 119.99650 * 0.02562 * 20 18 17 48 48 H 0.97001 * 120.00447 * 180.02562 * 24 23 21 49 49 H 1.08998 * 109.58245 * 353.36676 * 29 9 7 50 50 H 1.08998 * 109.58960 * 113.79261 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2364 -1.1211 -0.7651 5 6 2.2365 -1.1211 0.7649 6 1 1.6113 -1.8586 1.2682 7 6 3.5293 -0.7813 1.4607 8 8 3.9720 0.3462 1.4009 9 7 4.1936 -1.7304 2.1494 10 6 3.6668 -3.0992 2.2360 11 6 4.7620 -4.0742 1.7776 12 6 6.0281 -3.8349 2.6033 13 6 6.5276 -2.4068 2.3724 14 6 7.8114 -2.1792 3.1727 15 8 8.8462 -3.0228 2.6633 16 7 6.7990 -2.2068 0.9427 17 6 7.3870 -0.8830 0.6986 18 6 7.5223 -0.6593 -0.7855 19 8 7.1637 -1.5180 -1.5634 20 7 8.0409 0.4955 -1.2485 21 6 8.1635 0.6991 -2.5987 22 1 7.8442 -0.0654 -3.2914 23 6 8.6986 1.8893 -3.0759 24 7 9.0867 2.8200 -2.2331 25 14 8.8663 2.1666 -4.9156 26 1 7.6294 2.8034 -5.4350 27 1 10.0278 3.0539 -5.1786 28 1 9.0752 0.8632 -5.5957 29 6 5.4555 -1.4146 2.8325 30 1 -0.3633 0.0772 1.0248 31 1 -0.3632 0.8489 -0.5793 32 1 -0.3633 -0.9260 -0.4455 33 1 3.1714 -0.8753 -1.2684 34 1 1.6112 -1.8583 -1.2687 35 1 3.3866 -3.3184 3.2664 36 1 2.7948 -3.1968 1.5893 37 1 4.9797 -3.9105 0.7222 38 1 4.4204 -5.0989 1.9240 39 1 6.7991 -4.5428 2.2993 40 1 5.8036 -3.9745 3.6608 41 1 8.1156 -1.1364 3.0828 42 1 7.6328 -2.4163 4.2215 43 1 9.6911 -2.9315 3.1248 44 1 7.3928 -2.9383 0.5816 45 1 6.7416 -0.1147 1.1246 46 1 8.3708 -0.8307 1.1651 47 1 8.3273 1.1823 -0.6264 48 1 9.4599 3.6510 -2.5663 49 1 5.7640 -0.4003 2.5795 50 1 5.3185 -1.4989 3.9105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724909605.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:30 Heat of formation + Delta-G solvation = -117.950712 kcal Electronic energy + Delta-G solvation = -31727.599910 eV Core-core repulsion = 27561.408492 eV Total energy + Delta-G solvation = -4166.191418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.65217 -40.36643 -39.57854 -37.79203 -37.21107 -36.11885 -35.46654 -33.43008 -33.16147 -31.64209 -29.69515 -28.18502 -27.19486 -26.81469 -25.74948 -24.20254 -23.05220 -21.78115 -21.11980 -20.46499 -19.95394 -19.53203 -18.45431 -18.31304 -17.87580 -17.07668 -16.94408 -16.58532 -16.13924 -16.01777 -15.89409 -15.53950 -15.35461 -15.32359 -14.91406 -14.80378 -14.22506 -14.13491 -14.02287 -13.79556 -13.69815 -13.56271 -13.25387 -13.15990 -13.04479 -12.90271 -12.86878 -12.72480 -12.45935 -12.34040 -12.14211 -11.83918 -11.73480 -11.54070 -11.37809 -11.30853 -10.94699 -10.91277 -10.74263 -10.37716 -10.04900 -9.54051 -9.22572 -8.49282 -5.98788 1.34598 1.36663 1.50865 1.52678 1.99694 2.01925 2.26124 2.84436 2.88137 3.16945 3.28216 3.40834 3.58497 3.78447 3.80320 3.85127 3.88388 4.07575 4.14275 4.18321 4.27752 4.31740 4.34149 4.38692 4.41062 4.47976 4.53679 4.57195 4.71775 4.73687 4.82735 4.84716 4.88024 4.93801 4.95830 5.03770 5.14499 5.20620 5.29173 5.36071 5.41400 5.53539 5.64103 5.88671 6.11941 6.41874 6.48096 6.56207 6.84352 7.08628 7.25842 7.51421 8.07034 8.68751 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008563 B = 0.004345 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.198166 B = 6442.486871 C = 8794.498567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.129 4.129 3 H 0.078 0.922 4 C -0.148 4.148 5 C -0.179 4.179 6 H 0.162 0.838 7 C 0.534 3.466 8 O -0.595 6.595 9 N -0.589 5.589 10 C 0.106 3.894 11 C -0.128 4.128 12 C -0.095 4.095 13 C 0.100 3.900 14 C 0.049 3.951 15 O -0.583 6.583 16 N -0.646 5.646 17 C 0.071 3.929 18 C 0.442 3.558 19 O -0.619 6.619 20 N -0.575 5.575 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.996 3.004 26 H -0.272 1.272 27 H -0.267 1.267 28 H -0.270 1.270 29 C 0.121 3.879 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.040 0.960 42 H 0.081 0.919 43 H 0.397 0.603 44 H 0.345 0.655 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.392 0.608 48 H 0.278 0.722 49 H 0.062 0.938 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.642 -13.153 16.882 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.148 4.148 3 H 0.097 0.903 4 C -0.186 4.186 5 C -0.199 4.199 6 H 0.179 0.821 7 C 0.323 3.677 8 O -0.476 6.476 9 N -0.319 5.319 10 C -0.015 4.015 11 C -0.166 4.166 12 C -0.132 4.132 13 C 0.008 3.992 14 C -0.032 4.032 15 O -0.391 6.391 16 N -0.278 5.278 17 C -0.061 4.061 18 C 0.229 3.771 19 O -0.505 6.505 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.215 4.215 24 N -0.564 5.564 25 Si 0.819 3.181 26 H -0.197 1.197 27 H -0.191 1.191 28 H -0.195 1.195 29 C -0.002 4.002 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.058 0.942 42 H 0.099 0.901 43 H 0.247 0.753 44 H 0.164 0.836 45 H 0.099 0.901 46 H 0.076 0.924 47 H 0.225 0.775 48 H 0.087 0.913 49 H 0.080 0.920 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.675 -12.952 15.768 24.563 hybrid contribution 2.316 1.161 -0.128 2.594 sum -11.358 -11.791 15.640 22.641 Atomic orbital electron populations 1.21366 0.89185 1.03323 1.02962 1.22394 0.97139 0.93512 1.01753 0.90340 1.23027 1.01994 1.02428 0.91132 1.22372 0.96661 1.05518 0.95380 0.82102 1.20239 0.85756 0.84099 0.77559 1.90670 1.70188 1.23734 1.63023 1.47745 1.22193 1.11111 1.50858 1.22146 0.97118 0.78849 1.03371 1.21883 0.94870 0.99754 1.00078 1.21477 0.97619 0.92775 1.01374 1.21548 0.93036 0.97898 0.86742 1.22810 0.88593 0.93442 0.98305 1.86405 1.24043 1.65273 1.63400 1.60111 1.51296 1.01664 1.14706 1.21410 0.98700 0.94304 0.91733 1.20811 0.81855 0.82812 0.91596 1.90452 1.54794 1.45575 1.59655 1.41932 1.55766 1.15964 1.07567 1.19660 1.40639 1.02570 0.83427 0.90431 1.26114 0.95942 0.94481 1.04934 1.69695 1.42371 1.07661 1.36682 0.84889 0.78327 0.78332 0.76520 1.19732 1.19116 1.19514 1.21574 0.83310 0.98298 0.97021 0.90878 0.91570 0.90405 0.92668 0.84741 0.88266 0.88504 0.93375 0.88412 0.91714 0.88580 0.94214 0.90051 0.75334 0.83626 0.90111 0.92402 0.77499 0.91290 0.91984 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 10.19 71.98 0.73 -1.14 16 2 C -0.13 -3.36 5.92 -10.79 -0.06 -3.42 16 3 H 0.08 2.63 7.67 -2.39 -0.02 2.62 16 4 C -0.15 -4.07 9.88 30.60 0.30 -3.77 16 5 C -0.18 -4.43 4.69 -11.54 -0.05 -4.49 16 6 H 0.16 2.55 6.80 -2.39 -0.02 2.53 16 7 C 0.53 17.42 7.48 87.65 0.66 18.08 16 8 O -0.59 -25.72 15.67 -3.04 -0.05 -25.77 16 9 N -0.59 -14.99 2.89 -818.14 -2.36 -17.35 16 10 C 0.11 1.74 6.33 86.51 0.55 2.28 16 11 C -0.13 -2.33 5.95 30.82 0.18 -2.15 16 12 C -0.09 -1.73 4.69 30.62 0.14 -1.59 16 13 C 0.10 2.40 0.39 3.59 0.00 2.41 16 14 C 0.05 0.98 5.22 71.98 0.38 1.35 16 15 O -0.58 -12.52 12.60 -148.98 -1.88 -14.40 16 16 N -0.65 -22.53 4.63 -473.85 -2.19 -24.72 16 17 C 0.07 2.92 5.28 85.56 0.45 3.37 16 18 C 0.44 23.82 7.83 87.66 0.69 24.51 16 19 O -0.62 -37.47 15.90 -3.05 -0.05 -37.52 16 20 N -0.58 -33.07 5.29 -306.98 -1.62 -34.69 16 21 C -0.33 -20.54 9.68 84.04 0.81 -19.73 16 22 H 0.08 5.05 7.16 -2.91 -0.02 5.03 16 23 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 24 N -0.92 -53.49 13.05 21.66 0.28 -53.21 16 25 Si 1.00 45.69 29.55 68.60 2.03 47.71 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 28 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 29 C 0.12 3.02 5.05 86.35 0.44 3.46 16 30 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.00 7.90 -2.39 -0.02 0.98 16 33 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.13 2.72 8.05 -2.39 -0.02 2.70 16 35 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 1.36 5.66 -2.39 -0.01 1.34 16 37 H 0.05 1.30 7.53 -2.39 -0.02 1.28 16 38 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.34 7.80 -2.39 -0.02 1.32 16 40 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.04 0.89 6.78 -2.39 -0.02 0.87 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.40 5.13 9.12 -74.06 -0.68 4.45 16 44 H 0.34 13.07 8.13 -89.69 -0.73 12.34 16 45 H 0.08 3.45 6.09 -2.38 -0.01 3.44 16 46 H 0.06 2.17 6.68 -2.39 -0.02 2.15 16 47 H 0.39 21.85 7.90 -92.71 -0.73 21.12 16 48 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 49 H 0.06 2.01 5.04 -2.39 -0.01 1.99 16 50 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -84.95 396.74 -1.31 -86.26 By element: Atomic # 1 Polarization: 56.07 SS G_CDS: -1.14 Total: 54.92 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 5.68 Total: 18.76 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -5.90 Total: -129.97 kcal Atomic # 8 Polarization: -75.71 SS G_CDS: -1.97 Total: -77.69 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -84.95 -1.31 -86.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724909605.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.694 kcal (2) G-P(sol) polarization free energy of solvation -84.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds