Wall clock time and date at job start Tue Mar 31 2020 23:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.99843 * 2 1 4 4 C 1.54321 * 109.88262 * 238.90108 * 2 1 3 5 5 H 1.09005 * 110.72098 * 144.41564 * 4 2 1 6 6 N 1.46897 * 110.72002 * 21.31972 * 4 2 1 7 7 C 1.46902 * 110.99821 * 157.44222 * 6 4 2 8 8 C 1.50706 * 109.46892 * 179.97438 * 7 6 4 9 9 O 1.21292 * 120.00058 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99813 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99886 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00008 * 0.02562 * 11 10 8 13 13 C 1.38945 * 119.99918 * 180.02562 * 11 10 8 14 14 N 1.31408 * 120.00390 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99817 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46774 * 90.00419 * 15 13 11 17 17 H 1.48505 * 109.47099 * 210.00130 * 15 13 11 18 18 H 1.48494 * 109.47264 * 330.00396 * 15 13 11 19 19 C 1.55157 * 102.94554 * 262.77645 * 4 2 1 20 20 C 1.54914 * 101.58016 * 324.49764 * 19 4 2 21 21 N 1.47024 * 109.88273 * 121.09299 * 2 1 3 22 22 C 1.34777 * 125.65048 * 300.44538 * 21 2 1 23 23 O 1.21280 * 120.00023 * 184.94125 * 22 21 2 24 24 C 1.50703 * 119.99732 * 4.93809 * 22 21 2 25 25 C 1.53179 * 109.54690 * 290.97742 * 24 22 21 26 26 C 1.53093 * 109.16439 * 183.15383 * 25 24 22 27 27 O 1.42897 * 109.41268 * 57.60941 * 26 25 24 28 28 C 1.42903 * 114.09866 * 298.84066 * 27 26 25 29 29 C 1.53087 * 109.41740 * 61.16229 * 28 27 26 30 30 H 1.09008 * 109.47258 * 196.00523 * 1 2 3 31 31 H 1.09003 * 109.47224 * 316.00209 * 1 2 3 32 32 H 1.09002 * 109.47108 * 76.00338 * 1 2 3 33 33 H 1.00902 * 110.99749 * 281.39163 * 6 4 2 34 34 H 1.09001 * 109.46837 * 299.99116 * 7 6 4 35 35 H 1.08991 * 109.47614 * 60.00069 * 7 6 4 36 36 H 0.96994 * 120.00211 * 0.02562 * 10 8 7 37 37 H 0.96998 * 120.00076 * 179.97438 * 14 13 11 38 38 H 1.08996 * 111.00395 * 82.56986 * 19 4 2 39 39 H 1.09003 * 111.00700 * 206.42902 * 19 4 2 40 40 H 1.08994 * 110.37072 * 278.16988 * 20 19 4 41 41 H 1.08999 * 110.46233 * 155.89251 * 20 19 4 42 42 H 1.09005 * 109.54206 * 51.24562 * 24 22 21 43 43 H 1.09002 * 109.51773 * 303.06147 * 25 24 22 44 44 H 1.08997 * 109.51707 * 63.24327 * 25 24 22 45 45 H 1.08998 * 109.47686 * 297.62794 * 26 25 24 46 46 H 1.08996 * 109.47589 * 177.59386 * 26 25 24 47 47 H 1.09009 * 109.48027 * 301.17588 * 28 27 26 48 48 H 1.09005 * 109.48888 * 181.15173 * 28 27 26 49 49 H 1.09002 * 109.52589 * 182.48667 * 29 28 27 50 50 H 1.08998 * 109.52380 * 62.29173 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2426 5 1 2.9657 -0.2833 -1.6182 6 7 1.0279 -0.7991 -2.2919 7 6 1.6353 -1.0052 -3.6135 8 6 0.5535 -1.0511 -4.6618 9 8 -0.6090 -0.9242 -4.3396 10 7 0.8778 -1.2322 -5.9573 11 6 -0.1063 -1.2745 -6.9109 12 1 -1.1415 -1.1623 -6.6240 13 6 0.2280 -1.4617 -8.2465 14 7 1.4874 -1.5988 -8.5956 15 14 -1.1130 -1.5201 -9.5457 16 1 -1.3653 -0.1494 -10.0585 17 1 -0.6804 -2.3954 -10.6646 18 1 -2.3592 -2.0617 -8.9468 19 6 2.3518 -2.1695 -0.6923 20 6 2.8568 -1.8498 0.7369 21 7 2.0300 -0.7140 1.1840 22 6 1.7753 -0.3845 2.4658 23 8 2.3138 -0.9921 3.3666 24 6 0.8213 0.7392 2.7795 25 6 1.4452 2.0736 2.3592 26 6 0.5038 3.2148 2.7532 27 8 0.2626 3.1670 4.1609 28 6 -0.3631 1.9615 4.6051 29 6 0.5434 0.7700 4.2856 30 1 -0.3634 -0.9879 0.2834 31 1 -0.3634 0.7393 0.7139 32 1 -0.3633 0.2486 -0.9972 33 1 0.3426 -1.5127 -2.0937 34 1 2.3182 -0.1841 -3.8315 35 1 2.1851 -1.9462 -3.6180 36 1 1.8074 -1.3333 -6.2150 37 1 1.7207 -1.7299 -9.5280 38 1 1.4452 -2.7737 -0.6603 39 1 3.1270 -2.6619 -1.2795 40 1 3.9091 -1.5668 0.7130 41 1 2.7102 -2.7074 1.3935 42 1 -0.1130 0.5858 2.2394 43 1 2.4037 2.2019 2.8622 44 1 1.5954 2.0814 1.2797 45 1 -0.4402 3.1080 2.2188 46 1 0.9620 4.1694 2.4950 47 1 -1.3185 1.8385 4.0949 48 1 -0.5296 2.0133 5.6811 49 1 0.0487 -0.1544 4.5837 50 1 1.4837 0.8721 4.8274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725554425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:57 Heat of formation + Delta-G solvation = -109.062227 kcal Electronic energy + Delta-G solvation = -30369.825558 eV Core-core repulsion = 26204.019573 eV Total energy + Delta-G solvation = -4165.805984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.01750 -39.36703 -38.43842 -37.79298 -34.82281 -34.20129 -33.82889 -31.69082 -31.32703 -31.11650 -30.45028 -26.87828 -26.23707 -25.38238 -23.97179 -23.88865 -23.02974 -20.93570 -20.41102 -19.43973 -19.24499 -18.01247 -17.41524 -16.78808 -16.35145 -16.23159 -16.08582 -15.49676 -15.35993 -15.15396 -14.78367 -14.58389 -14.15718 -14.07441 -13.86591 -13.75513 -13.59482 -13.29299 -13.01608 -12.78877 -12.64222 -12.41451 -12.30855 -12.27933 -11.91622 -11.68769 -11.61407 -11.52250 -11.29711 -11.19928 -11.08861 -11.00148 -10.91247 -10.48673 -10.44053 -10.27549 -10.18091 -9.70660 -9.56840 -8.86027 -8.57187 -8.18442 -8.02630 -6.47538 -3.88610 2.41018 2.71478 3.13709 3.22995 3.28342 3.55015 3.82619 3.88107 4.10978 4.20708 4.29011 4.41884 4.43971 4.48176 4.63005 4.83460 4.85450 4.91039 4.93415 5.02464 5.07099 5.11410 5.17880 5.19667 5.21675 5.30775 5.35546 5.44742 5.46567 5.50153 5.55574 5.63954 5.68580 5.72225 5.79318 5.81474 5.87616 5.90876 5.96846 6.14763 6.18257 6.40202 6.85608 7.03644 7.31418 7.46947 7.49711 7.96198 7.99787 8.54230 9.11766 9.47549 9.98247 10.70010 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020694 B = 0.002121 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.726186 B =13200.246208 C =14047.875759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.133 3.867 3 H 0.083 0.917 4 C 0.082 3.918 5 H 0.095 0.905 6 N -0.653 5.653 7 C 0.049 3.951 8 C 0.440 3.560 9 O -0.584 6.584 10 N -0.562 5.562 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.901 5.901 15 Si 0.930 3.070 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.270 1.270 19 C -0.166 4.166 20 C 0.109 3.891 21 N -0.615 5.615 22 C 0.539 3.461 23 O -0.544 6.544 24 C -0.116 4.116 25 C -0.152 4.152 26 C 0.063 3.937 27 O -0.383 6.383 28 C 0.061 3.939 29 C -0.136 4.136 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.354 0.646 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.098 0.902 47 H 0.052 0.948 48 H 0.097 0.903 49 H 0.077 0.923 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.781 4.618 20.650 21.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.030 3.970 3 H 0.101 0.899 4 C -0.030 4.030 5 H 0.113 0.887 6 N -0.285 5.285 7 C -0.083 4.083 8 C 0.225 3.775 9 O -0.469 6.469 10 N -0.199 5.199 11 C -0.430 4.430 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.542 5.542 15 Si 0.757 3.243 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.206 4.206 20 C -0.014 4.014 21 N -0.349 5.349 22 C 0.328 3.672 23 O -0.421 6.421 24 C -0.136 4.136 25 C -0.189 4.189 26 C -0.014 4.014 27 O -0.302 6.302 28 C -0.016 4.016 29 C -0.174 4.174 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.176 0.824 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.126 0.874 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.074 0.926 46 H 0.116 0.884 47 H 0.070 0.930 48 H 0.115 0.885 49 H 0.096 0.904 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.353 5.194 21.262 22.014 hybrid contribution 0.320 -1.415 -1.186 1.873 sum 2.674 3.780 20.077 20.603 Atomic orbital electron populations 1.22395 0.93920 1.01802 1.05055 1.21701 0.95651 0.95763 0.83935 0.89909 1.22585 0.95143 0.94052 0.91196 0.88665 1.60132 1.13596 1.54911 0.99831 1.21722 0.96662 1.00720 0.89218 1.19763 0.89623 0.84624 0.83501 1.90526 1.20012 1.55329 1.80993 1.41863 1.10055 1.62967 1.04976 1.19693 0.90475 1.46601 0.86187 0.87898 1.25269 0.97181 0.97189 0.98274 1.69604 1.16401 1.49406 1.18793 0.85857 0.80489 0.78231 0.79713 1.20346 1.20925 1.19414 1.23585 1.02707 0.98640 0.95687 1.22123 0.94766 0.89485 0.94990 1.48653 1.50636 1.30362 1.05255 1.20192 0.81926 0.84362 0.80745 1.90690 1.51920 1.54492 1.45000 1.21627 0.99549 0.93836 0.98633 1.22282 1.00399 0.93446 1.02802 1.22581 0.98170 0.98697 0.81935 1.87942 1.80872 1.38236 1.23108 1.22623 0.94527 0.83985 1.00460 1.22043 1.01972 0.99273 0.94160 0.92612 0.92564 0.87676 0.82450 0.89431 0.93621 0.77454 0.91819 0.90230 0.89576 0.91381 0.90562 0.87351 0.90537 0.89629 0.92650 0.88370 0.92983 0.88519 0.90389 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 7.92 37.16 0.29 -1.43 16 2 C 0.13 1.28 2.84 -66.95 -0.19 1.09 16 3 H 0.08 0.74 5.92 -51.93 -0.31 0.43 16 4 C 0.08 0.83 3.11 -65.88 -0.21 0.63 16 5 H 0.10 0.90 7.86 -51.93 -0.41 0.50 16 6 N -0.65 -8.72 4.14 -106.05 -0.44 -9.16 16 7 C 0.05 0.76 6.04 -4.97 -0.03 0.73 16 8 C 0.44 9.63 7.82 -10.98 -0.09 9.54 16 9 O -0.58 -14.84 15.78 5.55 0.09 -14.75 16 10 N -0.56 -13.55 5.29 -10.96 -0.06 -13.61 16 11 C -0.30 -8.08 9.68 -14.93 -0.14 -8.23 16 12 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -23.84 13.05 55.50 0.72 -23.12 16 15 Si 0.93 20.51 29.55 -169.99 -5.02 15.48 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 19 C -0.17 -1.53 6.67 -24.58 -0.16 -1.70 16 20 C 0.11 1.08 6.89 -2.52 -0.02 1.06 16 21 N -0.61 -6.45 3.08 -163.01 -0.50 -6.95 16 22 C 0.54 6.39 7.00 -10.98 -0.08 6.31 16 23 O -0.54 -8.30 16.22 5.56 0.09 -8.21 16 24 C -0.12 -1.06 1.71 -91.58 -0.16 -1.22 16 25 C -0.15 -1.23 5.12 -26.59 -0.14 -1.37 16 26 C 0.06 0.48 6.84 37.21 0.25 0.74 16 27 O -0.38 -3.66 10.77 -35.23 -0.38 -4.04 16 28 C 0.06 0.47 6.84 37.20 0.25 0.73 16 29 C -0.14 -1.23 4.82 -26.59 -0.13 -1.36 16 30 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.06 0.48 5.29 -51.93 -0.27 0.20 16 32 H 0.10 1.27 6.60 -51.93 -0.34 0.92 16 33 H 0.35 5.05 7.46 -39.29 -0.29 4.76 16 34 H 0.09 1.24 8.08 -51.93 -0.42 0.82 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.39 9.03 7.90 -40.82 -0.32 8.71 16 37 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.08 0.78 7.80 -51.93 -0.41 0.38 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 42 H 0.11 0.91 5.07 -51.93 -0.26 0.65 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.63 5.28 -51.93 -0.27 0.36 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 48 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 LS Contribution 388.13 15.07 5.85 5.85 Total: -1.00 -31.97 388.13 -8.16 -40.13 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -7.88 Total: 12.36 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -0.63 Total: 6.00 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.27 Total: -52.84 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.20 Total: -26.99 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.97 -8.16 -40.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725554425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.931 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds