Wall clock time and date at job start Tue Mar 31 2020 23:31:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.99843 * 2 1
4 4 C 1.54321 * 109.88262 * 238.90108 * 2 1 3
5 5 H 1.09005 * 110.72098 * 144.41564 * 4 2 1
6 6 N 1.46897 * 110.72002 * 21.31972 * 4 2 1
7 7 C 1.46902 * 110.99821 * 157.44222 * 6 4 2
8 8 C 1.50706 * 109.46892 * 179.97438 * 7 6 4
9 9 O 1.21292 * 120.00058 * 0.02562 * 8 7 6
10 10 N 1.34775 * 119.99813 * 179.97438 * 8 7 6
11 11 C 1.37101 * 119.99886 * 179.97438 * 10 8 7
12 12 H 1.08000 * 120.00008 * 0.02562 * 11 10 8
13 13 C 1.38945 * 119.99918 * 180.02562 * 11 10 8
14 14 N 1.31408 * 120.00390 * 0.02562 * 13 11 10
15 15 Si 1.86803 * 119.99817 * 179.97438 * 13 11 10
16 16 H 1.48506 * 109.46774 * 90.00419 * 15 13 11
17 17 H 1.48505 * 109.47099 * 210.00130 * 15 13 11
18 18 H 1.48494 * 109.47264 * 330.00396 * 15 13 11
19 19 C 1.55157 * 102.94554 * 262.77645 * 4 2 1
20 20 C 1.54914 * 101.58016 * 324.49764 * 19 4 2
21 21 N 1.47024 * 109.88273 * 121.09299 * 2 1 3
22 22 C 1.34777 * 125.65048 * 300.44538 * 21 2 1
23 23 O 1.21280 * 120.00023 * 184.94125 * 22 21 2
24 24 C 1.50703 * 119.99732 * 4.93809 * 22 21 2
25 25 C 1.53179 * 109.54690 * 290.97742 * 24 22 21
26 26 C 1.53093 * 109.16439 * 183.15383 * 25 24 22
27 27 O 1.42897 * 109.41268 * 57.60941 * 26 25 24
28 28 C 1.42903 * 114.09866 * 298.84066 * 27 26 25
29 29 C 1.53087 * 109.41740 * 61.16229 * 28 27 26
30 30 H 1.09008 * 109.47258 * 196.00523 * 1 2 3
31 31 H 1.09003 * 109.47224 * 316.00209 * 1 2 3
32 32 H 1.09002 * 109.47108 * 76.00338 * 1 2 3
33 33 H 1.00902 * 110.99749 * 281.39163 * 6 4 2
34 34 H 1.09001 * 109.46837 * 299.99116 * 7 6 4
35 35 H 1.08991 * 109.47614 * 60.00069 * 7 6 4
36 36 H 0.96994 * 120.00211 * 0.02562 * 10 8 7
37 37 H 0.96998 * 120.00076 * 179.97438 * 14 13 11
38 38 H 1.08996 * 111.00395 * 82.56986 * 19 4 2
39 39 H 1.09003 * 111.00700 * 206.42902 * 19 4 2
40 40 H 1.08994 * 110.37072 * 278.16988 * 20 19 4
41 41 H 1.08999 * 110.46233 * 155.89251 * 20 19 4
42 42 H 1.09005 * 109.54206 * 51.24562 * 24 22 21
43 43 H 1.09002 * 109.51773 * 303.06147 * 25 24 22
44 44 H 1.08997 * 109.51707 * 63.24327 * 25 24 22
45 45 H 1.08998 * 109.47686 * 297.62794 * 26 25 24
46 46 H 1.08996 * 109.47589 * 177.59386 * 26 25 24
47 47 H 1.09009 * 109.48027 * 301.17588 * 28 27 26
48 48 H 1.09005 * 109.48888 * 181.15173 * 28 27 26
49 49 H 1.09002 * 109.52589 * 182.48667 * 29 28 27
50 50 H 1.08998 * 109.52380 * 62.29173 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9027 1.0243 0.0000
4 6 2.0548 -0.7496 -1.2426
5 1 2.9657 -0.2833 -1.6182
6 7 1.0279 -0.7991 -2.2919
7 6 1.6353 -1.0052 -3.6135
8 6 0.5535 -1.0511 -4.6618
9 8 -0.6090 -0.9242 -4.3396
10 7 0.8778 -1.2322 -5.9573
11 6 -0.1063 -1.2745 -6.9109
12 1 -1.1415 -1.1623 -6.6240
13 6 0.2280 -1.4617 -8.2465
14 7 1.4874 -1.5988 -8.5956
15 14 -1.1130 -1.5201 -9.5457
16 1 -1.3653 -0.1494 -10.0585
17 1 -0.6804 -2.3954 -10.6646
18 1 -2.3592 -2.0617 -8.9468
19 6 2.3518 -2.1695 -0.6923
20 6 2.8568 -1.8498 0.7369
21 7 2.0300 -0.7140 1.1840
22 6 1.7753 -0.3845 2.4658
23 8 2.3138 -0.9921 3.3666
24 6 0.8213 0.7392 2.7795
25 6 1.4452 2.0736 2.3592
26 6 0.5038 3.2148 2.7532
27 8 0.2626 3.1670 4.1609
28 6 -0.3631 1.9615 4.6051
29 6 0.5434 0.7700 4.2856
30 1 -0.3634 -0.9879 0.2834
31 1 -0.3634 0.7393 0.7139
32 1 -0.3633 0.2486 -0.9972
33 1 0.3426 -1.5127 -2.0937
34 1 2.3182 -0.1841 -3.8315
35 1 2.1851 -1.9462 -3.6180
36 1 1.8074 -1.3333 -6.2150
37 1 1.7207 -1.7299 -9.5280
38 1 1.4452 -2.7737 -0.6603
39 1 3.1270 -2.6619 -1.2795
40 1 3.9091 -1.5668 0.7130
41 1 2.7102 -2.7074 1.3935
42 1 -0.1130 0.5858 2.2394
43 1 2.4037 2.2019 2.8622
44 1 1.5954 2.0814 1.2797
45 1 -0.4402 3.1080 2.2188
46 1 0.9620 4.1694 2.4950
47 1 -1.3185 1.8385 4.0949
48 1 -0.5296 2.0133 5.6811
49 1 0.0487 -0.1544 4.5837
50 1 1.4837 0.8721 4.8274
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001725554425.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:31:57
Heat of formation + Delta-G solvation = -109.062227 kcal
Electronic energy + Delta-G solvation = -30369.825558 eV
Core-core repulsion = 26204.019573 eV
Total energy + Delta-G solvation = -4165.805984 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.01750 -39.36703 -38.43842 -37.79298 -34.82281 -34.20129 -33.82889 -31.69082
-31.32703 -31.11650 -30.45028 -26.87828 -26.23707 -25.38238 -23.97179 -23.88865
-23.02974 -20.93570 -20.41102 -19.43973 -19.24499 -18.01247 -17.41524 -16.78808
-16.35145 -16.23159 -16.08582 -15.49676 -15.35993 -15.15396 -14.78367 -14.58389
-14.15718 -14.07441 -13.86591 -13.75513 -13.59482 -13.29299 -13.01608 -12.78877
-12.64222 -12.41451 -12.30855 -12.27933 -11.91622 -11.68769 -11.61407 -11.52250
-11.29711 -11.19928 -11.08861 -11.00148 -10.91247 -10.48673 -10.44053 -10.27549
-10.18091 -9.70660 -9.56840 -8.86027 -8.57187 -8.18442 -8.02630 -6.47538
-3.88610 2.41018 2.71478 3.13709 3.22995 3.28342 3.55015 3.82619
3.88107 4.10978 4.20708 4.29011 4.41884 4.43971 4.48176 4.63005
4.83460 4.85450 4.91039 4.93415 5.02464 5.07099 5.11410 5.17880
5.19667 5.21675 5.30775 5.35546 5.44742 5.46567 5.50153 5.55574
5.63954 5.68580 5.72225 5.79318 5.81474 5.87616 5.90876 5.96846
6.14763 6.18257 6.40202 6.85608 7.03644 7.31418 7.46947 7.49711
7.96198 7.99787 8.54230 9.11766 9.47549 9.98247 10.70010
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.020694 B = 0.002121 C = 0.001993
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1352.726186 B =13200.246208 C =14047.875759
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.133 3.867
3 H 0.083 0.917
4 C 0.082 3.918
5 H 0.095 0.905
6 N -0.653 5.653
7 C 0.049 3.951
8 C 0.440 3.560
9 O -0.584 6.584
10 N -0.562 5.562
11 C -0.300 4.300
12 H 0.103 0.897
13 C 0.023 3.977
14 N -0.901 5.901
15 Si 0.930 3.070
16 H -0.277 1.277
17 H -0.284 1.284
18 H -0.270 1.270
19 C -0.166 4.166
20 C 0.109 3.891
21 N -0.615 5.615
22 C 0.539 3.461
23 O -0.544 6.544
24 C -0.116 4.116
25 C -0.152 4.152
26 C 0.063 3.937
27 O -0.383 6.383
28 C 0.061 3.939
29 C -0.136 4.136
30 H 0.055 0.945
31 H 0.056 0.944
32 H 0.105 0.895
33 H 0.354 0.646
34 H 0.087 0.913
35 H 0.046 0.954
36 H 0.392 0.608
37 H 0.272 0.728
38 H 0.079 0.921
39 H 0.086 0.914
40 H 0.068 0.932
41 H 0.076 0.924
42 H 0.109 0.891
43 H 0.076 0.924
44 H 0.085 0.915
45 H 0.055 0.945
46 H 0.098 0.902
47 H 0.052 0.948
48 H 0.097 0.903
49 H 0.077 0.923
50 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.781 4.618 20.650 21.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C 0.030 3.970
3 H 0.101 0.899
4 C -0.030 4.030
5 H 0.113 0.887
6 N -0.285 5.285
7 C -0.083 4.083
8 C 0.225 3.775
9 O -0.469 6.469
10 N -0.199 5.199
11 C -0.430 4.430
12 H 0.121 0.879
13 C -0.179 4.179
14 N -0.542 5.542
15 Si 0.757 3.243
16 H -0.203 1.203
17 H -0.209 1.209
18 H -0.194 1.194
19 C -0.206 4.206
20 C -0.014 4.014
21 N -0.349 5.349
22 C 0.328 3.672
23 O -0.421 6.421
24 C -0.136 4.136
25 C -0.189 4.189
26 C -0.014 4.014
27 O -0.302 6.302
28 C -0.016 4.016
29 C -0.174 4.174
30 H 0.074 0.926
31 H 0.074 0.926
32 H 0.123 0.877
33 H 0.176 0.824
34 H 0.106 0.894
35 H 0.064 0.936
36 H 0.225 0.775
37 H 0.082 0.918
38 H 0.098 0.902
39 H 0.104 0.896
40 H 0.086 0.914
41 H 0.094 0.906
42 H 0.126 0.874
43 H 0.095 0.905
44 H 0.104 0.896
45 H 0.074 0.926
46 H 0.116 0.884
47 H 0.070 0.930
48 H 0.115 0.885
49 H 0.096 0.904
50 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 2.353 5.194 21.262 22.014
hybrid contribution 0.320 -1.415 -1.186 1.873
sum 2.674 3.780 20.077 20.603
Atomic orbital electron populations
1.22395 0.93920 1.01802 1.05055 1.21701 0.95651 0.95763 0.83935
0.89909 1.22585 0.95143 0.94052 0.91196 0.88665 1.60132 1.13596
1.54911 0.99831 1.21722 0.96662 1.00720 0.89218 1.19763 0.89623
0.84624 0.83501 1.90526 1.20012 1.55329 1.80993 1.41863 1.10055
1.62967 1.04976 1.19693 0.90475 1.46601 0.86187 0.87898 1.25269
0.97181 0.97189 0.98274 1.69604 1.16401 1.49406 1.18793 0.85857
0.80489 0.78231 0.79713 1.20346 1.20925 1.19414 1.23585 1.02707
0.98640 0.95687 1.22123 0.94766 0.89485 0.94990 1.48653 1.50636
1.30362 1.05255 1.20192 0.81926 0.84362 0.80745 1.90690 1.51920
1.54492 1.45000 1.21627 0.99549 0.93836 0.98633 1.22282 1.00399
0.93446 1.02802 1.22581 0.98170 0.98697 0.81935 1.87942 1.80872
1.38236 1.23108 1.22623 0.94527 0.83985 1.00460 1.22043 1.01972
0.99273 0.94160 0.92612 0.92564 0.87676 0.82450 0.89431 0.93621
0.77454 0.91819 0.90230 0.89576 0.91381 0.90562 0.87351 0.90537
0.89629 0.92650 0.88370 0.92983 0.88519 0.90389 0.90081
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.72 7.92 37.16 0.29 -1.43 16
2 C 0.13 1.28 2.84 -66.95 -0.19 1.09 16
3 H 0.08 0.74 5.92 -51.93 -0.31 0.43 16
4 C 0.08 0.83 3.11 -65.88 -0.21 0.63 16
5 H 0.10 0.90 7.86 -51.93 -0.41 0.50 16
6 N -0.65 -8.72 4.14 -106.05 -0.44 -9.16 16
7 C 0.05 0.76 6.04 -4.97 -0.03 0.73 16
8 C 0.44 9.63 7.82 -10.98 -0.09 9.54 16
9 O -0.58 -14.84 15.78 5.55 0.09 -14.75 16
10 N -0.56 -13.55 5.29 -10.96 -0.06 -13.61 16
11 C -0.30 -8.08 9.68 -14.93 -0.14 -8.23 16
12 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16
13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16
14 N -0.90 -23.84 13.05 55.50 0.72 -23.12 16
15 Si 0.93 20.51 29.55 -169.99 -5.02 15.48 16
16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16
17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
18 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16
19 C -0.17 -1.53 6.67 -24.58 -0.16 -1.70 16
20 C 0.11 1.08 6.89 -2.52 -0.02 1.06 16
21 N -0.61 -6.45 3.08 -163.01 -0.50 -6.95 16
22 C 0.54 6.39 7.00 -10.98 -0.08 6.31 16
23 O -0.54 -8.30 16.22 5.56 0.09 -8.21 16
24 C -0.12 -1.06 1.71 -91.58 -0.16 -1.22 16
25 C -0.15 -1.23 5.12 -26.59 -0.14 -1.37 16
26 C 0.06 0.48 6.84 37.21 0.25 0.74 16
27 O -0.38 -3.66 10.77 -35.23 -0.38 -4.04 16
28 C 0.06 0.47 6.84 37.20 0.25 0.73 16
29 C -0.14 -1.23 4.82 -26.59 -0.13 -1.36 16
30 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16
31 H 0.06 0.48 5.29 -51.93 -0.27 0.20 16
32 H 0.10 1.27 6.60 -51.93 -0.34 0.92 16
33 H 0.35 5.05 7.46 -39.29 -0.29 4.76 16
34 H 0.09 1.24 8.08 -51.93 -0.42 0.82 16
35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
36 H 0.39 9.03 7.90 -40.82 -0.32 8.71 16
37 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16
38 H 0.08 0.78 7.80 -51.93 -0.41 0.38 16
39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16
40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
41 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16
42 H 0.11 0.91 5.07 -51.93 -0.26 0.65 16
43 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16
44 H 0.09 0.63 5.28 -51.93 -0.27 0.36 16
45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16
46 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16
47 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16
48 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16
49 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
50 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16
LS Contribution 388.13 15.07 5.85 5.85
Total: -1.00 -31.97 388.13 -8.16 -40.13
By element:
Atomic # 1 Polarization: 20.24 SS G_CDS: -7.88 Total: 12.36 kcal
Atomic # 6 Polarization: 6.63 SS G_CDS: -0.63 Total: 6.00 kcal
Atomic # 7 Polarization: -52.57 SS G_CDS: -0.27 Total: -52.84 kcal
Atomic # 8 Polarization: -26.79 SS G_CDS: -0.20 Total: -26.99 kcal
Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -31.97 -8.16 -40.13 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725554425.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.931 kcal
(2) G-P(sol) polarization free energy of solvation -31.974 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.905 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.062 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds