Wall clock time and date at job start Tue Mar 31 2020 23:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.99843 * 2 1 4 4 C 1.54321 * 109.88262 * 238.90108 * 2 1 3 5 5 H 1.09005 * 110.72098 * 144.41564 * 4 2 1 6 6 N 1.46897 * 110.72002 * 21.31972 * 4 2 1 7 7 C 1.46902 * 110.99821 * 157.44222 * 6 4 2 8 8 C 1.50706 * 109.46892 * 179.97438 * 7 6 4 9 9 O 1.21292 * 120.00058 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99813 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99886 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00008 * 0.02562 * 11 10 8 13 13 C 1.38945 * 119.99918 * 180.02562 * 11 10 8 14 14 N 1.31408 * 120.00390 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99817 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46774 * 90.00419 * 15 13 11 17 17 H 1.48505 * 109.47099 * 210.00130 * 15 13 11 18 18 H 1.48494 * 109.47264 * 330.00396 * 15 13 11 19 19 C 1.55157 * 102.94554 * 262.77645 * 4 2 1 20 20 C 1.54914 * 101.58016 * 324.49764 * 19 4 2 21 21 N 1.47024 * 109.88273 * 121.09299 * 2 1 3 22 22 C 1.34777 * 125.65048 * 300.44538 * 21 2 1 23 23 O 1.21280 * 120.00023 * 184.94125 * 22 21 2 24 24 C 1.50703 * 119.99732 * 4.93809 * 22 21 2 25 25 C 1.53179 * 109.54690 * 290.97742 * 24 22 21 26 26 C 1.53093 * 109.16439 * 183.15383 * 25 24 22 27 27 O 1.42897 * 109.41268 * 57.60941 * 26 25 24 28 28 C 1.42903 * 114.09866 * 298.84066 * 27 26 25 29 29 C 1.53087 * 109.41740 * 61.16229 * 28 27 26 30 30 H 1.09008 * 109.47258 * 196.00523 * 1 2 3 31 31 H 1.09003 * 109.47224 * 316.00209 * 1 2 3 32 32 H 1.09002 * 109.47108 * 76.00338 * 1 2 3 33 33 H 1.00902 * 110.99749 * 281.39163 * 6 4 2 34 34 H 1.09001 * 109.46837 * 299.99116 * 7 6 4 35 35 H 1.08991 * 109.47614 * 60.00069 * 7 6 4 36 36 H 0.96994 * 120.00211 * 0.02562 * 10 8 7 37 37 H 0.96998 * 120.00076 * 179.97438 * 14 13 11 38 38 H 1.08996 * 111.00395 * 82.56986 * 19 4 2 39 39 H 1.09003 * 111.00700 * 206.42902 * 19 4 2 40 40 H 1.08994 * 110.37072 * 278.16988 * 20 19 4 41 41 H 1.08999 * 110.46233 * 155.89251 * 20 19 4 42 42 H 1.09005 * 109.54206 * 51.24562 * 24 22 21 43 43 H 1.09002 * 109.51773 * 303.06147 * 25 24 22 44 44 H 1.08997 * 109.51707 * 63.24327 * 25 24 22 45 45 H 1.08998 * 109.47686 * 297.62794 * 26 25 24 46 46 H 1.08996 * 109.47589 * 177.59386 * 26 25 24 47 47 H 1.09009 * 109.48027 * 301.17588 * 28 27 26 48 48 H 1.09005 * 109.48888 * 181.15173 * 28 27 26 49 49 H 1.09002 * 109.52589 * 182.48667 * 29 28 27 50 50 H 1.08998 * 109.52380 * 62.29173 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2426 5 1 2.9657 -0.2833 -1.6182 6 7 1.0279 -0.7991 -2.2919 7 6 1.6353 -1.0052 -3.6135 8 6 0.5535 -1.0511 -4.6618 9 8 -0.6090 -0.9242 -4.3396 10 7 0.8778 -1.2322 -5.9573 11 6 -0.1063 -1.2745 -6.9109 12 1 -1.1415 -1.1623 -6.6240 13 6 0.2280 -1.4617 -8.2465 14 7 1.4874 -1.5988 -8.5956 15 14 -1.1130 -1.5201 -9.5457 16 1 -1.3653 -0.1494 -10.0585 17 1 -0.6804 -2.3954 -10.6646 18 1 -2.3592 -2.0617 -8.9468 19 6 2.3518 -2.1695 -0.6923 20 6 2.8568 -1.8498 0.7369 21 7 2.0300 -0.7140 1.1840 22 6 1.7753 -0.3845 2.4658 23 8 2.3138 -0.9921 3.3666 24 6 0.8213 0.7392 2.7795 25 6 1.4452 2.0736 2.3592 26 6 0.5038 3.2148 2.7532 27 8 0.2626 3.1670 4.1609 28 6 -0.3631 1.9615 4.6051 29 6 0.5434 0.7700 4.2856 30 1 -0.3634 -0.9879 0.2834 31 1 -0.3634 0.7393 0.7139 32 1 -0.3633 0.2486 -0.9972 33 1 0.3426 -1.5127 -2.0937 34 1 2.3182 -0.1841 -3.8315 35 1 2.1851 -1.9462 -3.6180 36 1 1.8074 -1.3333 -6.2150 37 1 1.7207 -1.7299 -9.5280 38 1 1.4452 -2.7737 -0.6603 39 1 3.1270 -2.6619 -1.2795 40 1 3.9091 -1.5668 0.7130 41 1 2.7102 -2.7074 1.3935 42 1 -0.1130 0.5858 2.2394 43 1 2.4037 2.2019 2.8622 44 1 1.5954 2.0814 1.2797 45 1 -0.4402 3.1080 2.2188 46 1 0.9620 4.1694 2.4950 47 1 -1.3185 1.8385 4.0949 48 1 -0.5296 2.0133 5.6811 49 1 0.0487 -0.1544 4.5837 50 1 1.4837 0.8721 4.8274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725554425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:57 Heat of formation + Delta-G solvation = -131.997834 kcal Electronic energy + Delta-G solvation = -30370.820120 eV Core-core repulsion = 26204.019573 eV Total energy + Delta-G solvation = -4166.800547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.85835 -40.30748 -39.80953 -38.89501 -36.17605 -35.53829 -34.92269 -33.23709 -32.41286 -31.83737 -31.48344 -28.21799 -27.01765 -26.55168 -25.41150 -24.55742 -23.80929 -21.74828 -21.18043 -21.10586 -20.09476 -19.90317 -18.34026 -17.79510 -17.44290 -17.07701 -16.95065 -16.71623 -16.35255 -16.29511 -16.03657 -15.71504 -15.55265 -15.22353 -14.80477 -14.76751 -14.55802 -14.21299 -14.06613 -13.92415 -13.62618 -13.48612 -13.38294 -13.19021 -13.13804 -12.96350 -12.75077 -12.62865 -12.39456 -12.36629 -12.13283 -12.08804 -11.93966 -11.70249 -11.68636 -11.47613 -11.24211 -10.97396 -10.46370 -10.30046 -9.98226 -9.73564 -9.29325 -8.44546 -5.92522 1.39433 1.43626 1.50212 1.55467 1.87155 2.09910 2.30655 2.85519 2.96961 3.23621 3.30142 3.45483 3.58215 3.66848 3.73399 3.76337 3.98792 4.05181 4.10650 4.18656 4.24216 4.28485 4.33136 4.42803 4.49420 4.53322 4.56892 4.61651 4.67433 4.69888 4.72920 4.75785 4.78815 4.82739 4.96453 5.01563 5.02809 5.08428 5.16351 5.20692 5.35006 5.43631 5.55067 5.89985 6.11039 6.25405 6.34169 6.46746 6.63109 7.05807 7.15883 7.60673 8.15643 8.72679 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020694 B = 0.002121 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.726186 B =13200.246208 C =14047.875759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.136 3.864 3 H 0.098 0.902 4 C 0.084 3.916 5 H 0.112 0.888 6 N -0.659 5.659 7 C 0.064 3.936 8 C 0.439 3.561 9 O -0.622 6.622 10 N -0.575 5.575 11 C -0.330 4.330 12 H 0.079 0.921 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.990 3.010 16 H -0.272 1.272 17 H -0.273 1.273 18 H -0.273 1.273 19 C -0.157 4.157 20 C 0.107 3.893 21 N -0.612 5.612 22 C 0.534 3.466 23 O -0.584 6.584 24 C -0.112 4.112 25 C -0.145 4.145 26 C 0.060 3.940 27 O -0.402 6.402 28 C 0.062 3.938 29 C -0.134 4.134 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.348 0.652 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.120 0.880 43 H 0.063 0.937 44 H 0.096 0.904 45 H 0.068 0.932 46 H 0.111 0.889 47 H 0.067 0.933 48 H 0.108 0.892 49 H 0.076 0.924 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.082 5.296 20.446 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.033 3.967 3 H 0.115 0.885 4 C -0.027 4.027 5 H 0.130 0.870 6 N -0.291 5.291 7 C -0.068 4.068 8 C 0.227 3.773 9 O -0.508 6.508 10 N -0.212 5.212 11 C -0.460 4.460 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.562 5.562 15 Si 0.814 3.186 16 H -0.197 1.197 17 H -0.198 1.198 18 H -0.198 1.198 19 C -0.196 4.196 20 C -0.016 4.016 21 N -0.345 5.345 22 C 0.324 3.676 23 O -0.465 6.465 24 C -0.133 4.133 25 C -0.183 4.183 26 C -0.016 4.016 27 O -0.321 6.321 28 C -0.015 4.015 29 C -0.172 4.172 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.168 0.832 34 H 0.127 0.873 35 H 0.087 0.913 36 H 0.230 0.770 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.138 0.862 43 H 0.082 0.918 44 H 0.114 0.886 45 H 0.086 0.914 46 H 0.129 0.871 47 H 0.085 0.915 48 H 0.126 0.874 49 H 0.094 0.906 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.678 5.880 21.048 22.018 hybrid contribution 0.229 -1.638 -1.046 1.957 sum 2.906 4.242 20.002 20.653 Atomic orbital electron populations 1.22302 0.94114 1.01824 1.04292 1.21741 0.95425 0.96271 0.83295 0.88463 1.22640 0.94785 0.94829 0.90404 0.87024 1.60116 1.14403 1.54846 0.99688 1.21581 0.94391 1.02806 0.87994 1.20912 0.90636 0.81946 0.83845 1.90500 1.22376 1.56287 1.81669 1.41940 1.09703 1.64016 1.05587 1.19633 0.90242 1.48482 0.87626 0.90318 1.25990 0.99292 0.96461 0.99577 1.69661 1.17519 1.49562 1.19416 0.84973 0.77821 0.78466 0.77372 1.19732 1.19789 1.19790 1.23514 1.02827 0.98056 0.95234 1.22189 0.95279 0.89053 0.95082 1.48702 1.50228 1.30377 1.05183 1.20666 0.81831 0.84513 0.80614 1.90669 1.53609 1.56032 1.46161 1.21656 0.99301 0.93456 0.98853 1.22247 0.99895 0.92955 1.03202 1.22722 0.98679 0.98963 0.81251 1.87921 1.81144 1.38853 1.24205 1.22705 0.94506 0.82820 1.01425 1.22004 1.01295 0.99960 0.93923 0.93398 0.90989 0.89517 0.83161 0.87291 0.91264 0.76968 0.91405 0.90964 0.88070 0.90416 0.91595 0.86246 0.91788 0.88592 0.91410 0.87141 0.91516 0.87429 0.90561 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 7.92 71.98 0.57 -2.48 16 2 C 0.14 2.31 2.84 45.34 0.13 2.44 16 3 H 0.10 1.43 5.92 -2.39 -0.01 1.42 16 4 C 0.08 1.49 3.11 46.10 0.14 1.63 16 5 H 0.11 1.69 7.86 -2.38 -0.02 1.67 16 6 N -0.66 -16.36 4.14 -489.45 -2.03 -18.39 16 7 C 0.06 1.84 6.04 85.56 0.52 2.35 16 8 C 0.44 19.04 7.82 87.66 0.69 19.72 16 9 O -0.62 -31.87 15.78 -3.07 -0.05 -31.92 16 10 N -0.58 -27.76 5.29 -306.98 -1.62 -29.38 16 11 C -0.33 -18.02 9.68 84.04 0.81 -17.21 16 12 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 13 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 14 N -0.92 -48.24 13.05 21.66 0.28 -47.96 16 15 Si 0.99 41.79 29.55 68.60 2.03 43.82 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 C -0.16 -2.55 6.67 31.99 0.21 -2.34 16 20 C 0.11 1.95 6.89 86.86 0.60 2.55 16 21 N -0.61 -11.99 3.08 -788.05 -2.43 -14.41 16 22 C 0.53 12.31 7.00 87.66 0.61 12.92 16 23 O -0.58 -18.01 16.22 -3.03 -0.05 -18.06 16 24 C -0.11 -1.93 1.71 -11.42 -0.02 -1.95 16 25 C -0.15 -2.12 5.12 30.69 0.16 -1.97 16 26 C 0.06 0.80 6.84 72.01 0.49 1.29 16 27 O -0.40 -7.09 10.77 -148.98 -1.60 -8.69 16 28 C 0.06 0.88 6.84 72.01 0.49 1.37 16 29 C -0.13 -2.36 4.82 30.68 0.15 -2.21 16 30 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.07 1.06 5.29 -2.39 -0.01 1.05 16 32 H 0.09 1.98 6.60 -2.39 -0.02 1.97 16 33 H 0.35 9.55 7.46 -89.69 -0.67 8.88 16 34 H 0.11 2.72 8.08 -2.39 -0.02 2.70 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.40 18.13 7.90 -92.71 -0.73 17.40 16 37 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 38 H 0.07 1.31 7.80 -2.39 -0.02 1.30 16 39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 42 H 0.12 1.78 5.07 -2.38 -0.01 1.77 16 43 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.10 1.18 5.28 -2.39 -0.01 1.17 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 48 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 49 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.06 1.31 7.91 -2.39 -0.02 1.29 16 Total: -1.00 -69.94 388.13 0.13 -69.81 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: -0.43 Total: 39.29 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 6.02 Total: 15.89 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -5.79 Total: -110.14 kcal Atomic # 8 Polarization: -56.97 SS G_CDS: -1.70 Total: -58.67 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -69.94 0.13 -69.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725554425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.187 kcal (2) G-P(sol) polarization free energy of solvation -69.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds