Wall clock time and date at job start Tue Mar 31 2020 23:31:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.99843 * 2 1
4 4 C 1.54321 * 109.88262 * 238.90108 * 2 1 3
5 5 H 1.09005 * 110.72098 * 144.41564 * 4 2 1
6 6 N 1.46897 * 110.72002 * 21.31972 * 4 2 1
7 7 C 1.46902 * 110.99821 * 157.44222 * 6 4 2
8 8 C 1.50706 * 109.46892 * 179.97438 * 7 6 4
9 9 O 1.21292 * 120.00058 * 0.02562 * 8 7 6
10 10 N 1.34775 * 119.99813 * 179.97438 * 8 7 6
11 11 C 1.37101 * 119.99886 * 179.97438 * 10 8 7
12 12 H 1.08000 * 120.00008 * 0.02562 * 11 10 8
13 13 C 1.38945 * 119.99918 * 180.02562 * 11 10 8
14 14 N 1.31408 * 120.00390 * 0.02562 * 13 11 10
15 15 Si 1.86803 * 119.99817 * 179.97438 * 13 11 10
16 16 H 1.48506 * 109.46774 * 90.00419 * 15 13 11
17 17 H 1.48505 * 109.47099 * 210.00130 * 15 13 11
18 18 H 1.48494 * 109.47264 * 330.00396 * 15 13 11
19 19 C 1.55157 * 102.94554 * 262.77645 * 4 2 1
20 20 C 1.54914 * 101.58016 * 324.49764 * 19 4 2
21 21 N 1.47024 * 109.88273 * 121.09299 * 2 1 3
22 22 C 1.34777 * 125.65048 * 300.44538 * 21 2 1
23 23 O 1.21280 * 120.00023 * 184.94125 * 22 21 2
24 24 C 1.50703 * 119.99732 * 4.93809 * 22 21 2
25 25 C 1.53179 * 109.54690 * 290.97742 * 24 22 21
26 26 C 1.53093 * 109.16439 * 183.15383 * 25 24 22
27 27 O 1.42897 * 109.41268 * 57.60941 * 26 25 24
28 28 C 1.42903 * 114.09866 * 298.84066 * 27 26 25
29 29 C 1.53087 * 109.41740 * 61.16229 * 28 27 26
30 30 H 1.09008 * 109.47258 * 196.00523 * 1 2 3
31 31 H 1.09003 * 109.47224 * 316.00209 * 1 2 3
32 32 H 1.09002 * 109.47108 * 76.00338 * 1 2 3
33 33 H 1.00902 * 110.99749 * 281.39163 * 6 4 2
34 34 H 1.09001 * 109.46837 * 299.99116 * 7 6 4
35 35 H 1.08991 * 109.47614 * 60.00069 * 7 6 4
36 36 H 0.96994 * 120.00211 * 0.02562 * 10 8 7
37 37 H 0.96998 * 120.00076 * 179.97438 * 14 13 11
38 38 H 1.08996 * 111.00395 * 82.56986 * 19 4 2
39 39 H 1.09003 * 111.00700 * 206.42902 * 19 4 2
40 40 H 1.08994 * 110.37072 * 278.16988 * 20 19 4
41 41 H 1.08999 * 110.46233 * 155.89251 * 20 19 4
42 42 H 1.09005 * 109.54206 * 51.24562 * 24 22 21
43 43 H 1.09002 * 109.51773 * 303.06147 * 25 24 22
44 44 H 1.08997 * 109.51707 * 63.24327 * 25 24 22
45 45 H 1.08998 * 109.47686 * 297.62794 * 26 25 24
46 46 H 1.08996 * 109.47589 * 177.59386 * 26 25 24
47 47 H 1.09009 * 109.48027 * 301.17588 * 28 27 26
48 48 H 1.09005 * 109.48888 * 181.15173 * 28 27 26
49 49 H 1.09002 * 109.52589 * 182.48667 * 29 28 27
50 50 H 1.08998 * 109.52380 * 62.29173 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9027 1.0243 0.0000
4 6 2.0548 -0.7496 -1.2426
5 1 2.9657 -0.2833 -1.6182
6 7 1.0279 -0.7991 -2.2919
7 6 1.6353 -1.0052 -3.6135
8 6 0.5535 -1.0511 -4.6618
9 8 -0.6090 -0.9242 -4.3396
10 7 0.8778 -1.2322 -5.9573
11 6 -0.1063 -1.2745 -6.9109
12 1 -1.1415 -1.1623 -6.6240
13 6 0.2280 -1.4617 -8.2465
14 7 1.4874 -1.5988 -8.5956
15 14 -1.1130 -1.5201 -9.5457
16 1 -1.3653 -0.1494 -10.0585
17 1 -0.6804 -2.3954 -10.6646
18 1 -2.3592 -2.0617 -8.9468
19 6 2.3518 -2.1695 -0.6923
20 6 2.8568 -1.8498 0.7369
21 7 2.0300 -0.7140 1.1840
22 6 1.7753 -0.3845 2.4658
23 8 2.3138 -0.9921 3.3666
24 6 0.8213 0.7392 2.7795
25 6 1.4452 2.0736 2.3592
26 6 0.5038 3.2148 2.7532
27 8 0.2626 3.1670 4.1609
28 6 -0.3631 1.9615 4.6051
29 6 0.5434 0.7700 4.2856
30 1 -0.3634 -0.9879 0.2834
31 1 -0.3634 0.7393 0.7139
32 1 -0.3633 0.2486 -0.9972
33 1 0.3426 -1.5127 -2.0937
34 1 2.3182 -0.1841 -3.8315
35 1 2.1851 -1.9462 -3.6180
36 1 1.8074 -1.3333 -6.2150
37 1 1.7207 -1.7299 -9.5280
38 1 1.4452 -2.7737 -0.6603
39 1 3.1270 -2.6619 -1.2795
40 1 3.9091 -1.5668 0.7130
41 1 2.7102 -2.7074 1.3935
42 1 -0.1130 0.5858 2.2394
43 1 2.4037 2.2019 2.8622
44 1 1.5954 2.0814 1.2797
45 1 -0.4402 3.1080 2.2188
46 1 0.9620 4.1694 2.4950
47 1 -1.3185 1.8385 4.0949
48 1 -0.5296 2.0133 5.6811
49 1 0.0487 -0.1544 4.5837
50 1 1.4837 0.8721 4.8274
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001725554425.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:31:57
Heat of formation + Delta-G solvation = -131.997834 kcal
Electronic energy + Delta-G solvation = -30370.820120 eV
Core-core repulsion = 26204.019573 eV
Total energy + Delta-G solvation = -4166.800547 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.85835 -40.30748 -39.80953 -38.89501 -36.17605 -35.53829 -34.92269 -33.23709
-32.41286 -31.83737 -31.48344 -28.21799 -27.01765 -26.55168 -25.41150 -24.55742
-23.80929 -21.74828 -21.18043 -21.10586 -20.09476 -19.90317 -18.34026 -17.79510
-17.44290 -17.07701 -16.95065 -16.71623 -16.35255 -16.29511 -16.03657 -15.71504
-15.55265 -15.22353 -14.80477 -14.76751 -14.55802 -14.21299 -14.06613 -13.92415
-13.62618 -13.48612 -13.38294 -13.19021 -13.13804 -12.96350 -12.75077 -12.62865
-12.39456 -12.36629 -12.13283 -12.08804 -11.93966 -11.70249 -11.68636 -11.47613
-11.24211 -10.97396 -10.46370 -10.30046 -9.98226 -9.73564 -9.29325 -8.44546
-5.92522 1.39433 1.43626 1.50212 1.55467 1.87155 2.09910 2.30655
2.85519 2.96961 3.23621 3.30142 3.45483 3.58215 3.66848 3.73399
3.76337 3.98792 4.05181 4.10650 4.18656 4.24216 4.28485 4.33136
4.42803 4.49420 4.53322 4.56892 4.61651 4.67433 4.69888 4.72920
4.75785 4.78815 4.82739 4.96453 5.01563 5.02809 5.08428 5.16351
5.20692 5.35006 5.43631 5.55067 5.89985 6.11039 6.25405 6.34169
6.46746 6.63109 7.05807 7.15883 7.60673 8.15643 8.72679
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.020694 B = 0.002121 C = 0.001993
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1352.726186 B =13200.246208 C =14047.875759
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.136 3.864
3 H 0.098 0.902
4 C 0.084 3.916
5 H 0.112 0.888
6 N -0.659 5.659
7 C 0.064 3.936
8 C 0.439 3.561
9 O -0.622 6.622
10 N -0.575 5.575
11 C -0.330 4.330
12 H 0.079 0.921
13 C -0.014 4.014
14 N -0.920 5.920
15 Si 0.990 3.010
16 H -0.272 1.272
17 H -0.273 1.273
18 H -0.273 1.273
19 C -0.157 4.157
20 C 0.107 3.893
21 N -0.612 5.612
22 C 0.534 3.466
23 O -0.584 6.584
24 C -0.112 4.112
25 C -0.145 4.145
26 C 0.060 3.940
27 O -0.402 6.402
28 C 0.062 3.938
29 C -0.134 4.134
30 H 0.047 0.953
31 H 0.072 0.928
32 H 0.086 0.914
33 H 0.348 0.652
34 H 0.109 0.891
35 H 0.069 0.931
36 H 0.396 0.604
37 H 0.277 0.723
38 H 0.072 0.928
39 H 0.101 0.899
40 H 0.078 0.922
41 H 0.066 0.934
42 H 0.120 0.880
43 H 0.063 0.937
44 H 0.096 0.904
45 H 0.068 0.932
46 H 0.111 0.889
47 H 0.067 0.933
48 H 0.108 0.892
49 H 0.076 0.924
50 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.082 5.296 20.446 21.345
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.033 3.967
3 H 0.115 0.885
4 C -0.027 4.027
5 H 0.130 0.870
6 N -0.291 5.291
7 C -0.068 4.068
8 C 0.227 3.773
9 O -0.508 6.508
10 N -0.212 5.212
11 C -0.460 4.460
12 H 0.097 0.903
13 C -0.213 4.213
14 N -0.562 5.562
15 Si 0.814 3.186
16 H -0.197 1.197
17 H -0.198 1.198
18 H -0.198 1.198
19 C -0.196 4.196
20 C -0.016 4.016
21 N -0.345 5.345
22 C 0.324 3.676
23 O -0.465 6.465
24 C -0.133 4.133
25 C -0.183 4.183
26 C -0.016 4.016
27 O -0.321 6.321
28 C -0.015 4.015
29 C -0.172 4.172
30 H 0.066 0.934
31 H 0.090 0.910
32 H 0.105 0.895
33 H 0.168 0.832
34 H 0.127 0.873
35 H 0.087 0.913
36 H 0.230 0.770
37 H 0.086 0.914
38 H 0.090 0.910
39 H 0.119 0.881
40 H 0.096 0.904
41 H 0.084 0.916
42 H 0.138 0.862
43 H 0.082 0.918
44 H 0.114 0.886
45 H 0.086 0.914
46 H 0.129 0.871
47 H 0.085 0.915
48 H 0.126 0.874
49 H 0.094 0.906
50 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 2.678 5.880 21.048 22.018
hybrid contribution 0.229 -1.638 -1.046 1.957
sum 2.906 4.242 20.002 20.653
Atomic orbital electron populations
1.22302 0.94114 1.01824 1.04292 1.21741 0.95425 0.96271 0.83295
0.88463 1.22640 0.94785 0.94829 0.90404 0.87024 1.60116 1.14403
1.54846 0.99688 1.21581 0.94391 1.02806 0.87994 1.20912 0.90636
0.81946 0.83845 1.90500 1.22376 1.56287 1.81669 1.41940 1.09703
1.64016 1.05587 1.19633 0.90242 1.48482 0.87626 0.90318 1.25990
0.99292 0.96461 0.99577 1.69661 1.17519 1.49562 1.19416 0.84973
0.77821 0.78466 0.77372 1.19732 1.19789 1.19790 1.23514 1.02827
0.98056 0.95234 1.22189 0.95279 0.89053 0.95082 1.48702 1.50228
1.30377 1.05183 1.20666 0.81831 0.84513 0.80614 1.90669 1.53609
1.56032 1.46161 1.21656 0.99301 0.93456 0.98853 1.22247 0.99895
0.92955 1.03202 1.22722 0.98679 0.98963 0.81251 1.87921 1.81144
1.38853 1.24205 1.22705 0.94506 0.82820 1.01425 1.22004 1.01295
0.99960 0.93923 0.93398 0.90989 0.89517 0.83161 0.87291 0.91264
0.76968 0.91405 0.90964 0.88070 0.90416 0.91595 0.86246 0.91788
0.88592 0.91410 0.87141 0.91516 0.87429 0.90561 0.92145
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.05 7.92 71.98 0.57 -2.48 16
2 C 0.14 2.31 2.84 45.34 0.13 2.44 16
3 H 0.10 1.43 5.92 -2.39 -0.01 1.42 16
4 C 0.08 1.49 3.11 46.10 0.14 1.63 16
5 H 0.11 1.69 7.86 -2.38 -0.02 1.67 16
6 N -0.66 -16.36 4.14 -489.45 -2.03 -18.39 16
7 C 0.06 1.84 6.04 85.56 0.52 2.35 16
8 C 0.44 19.04 7.82 87.66 0.69 19.72 16
9 O -0.62 -31.87 15.78 -3.07 -0.05 -31.92 16
10 N -0.58 -27.76 5.29 -306.98 -1.62 -29.38 16
11 C -0.33 -18.02 9.68 84.04 0.81 -17.21 16
12 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16
13 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16
14 N -0.92 -48.24 13.05 21.66 0.28 -47.96 16
15 Si 0.99 41.79 29.55 68.60 2.03 43.82 16
16 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16
17 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16
18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16
19 C -0.16 -2.55 6.67 31.99 0.21 -2.34 16
20 C 0.11 1.95 6.89 86.86 0.60 2.55 16
21 N -0.61 -11.99 3.08 -788.05 -2.43 -14.41 16
22 C 0.53 12.31 7.00 87.66 0.61 12.92 16
23 O -0.58 -18.01 16.22 -3.03 -0.05 -18.06 16
24 C -0.11 -1.93 1.71 -11.42 -0.02 -1.95 16
25 C -0.15 -2.12 5.12 30.69 0.16 -1.97 16
26 C 0.06 0.80 6.84 72.01 0.49 1.29 16
27 O -0.40 -7.09 10.77 -148.98 -1.60 -8.69 16
28 C 0.06 0.88 6.84 72.01 0.49 1.37 16
29 C -0.13 -2.36 4.82 30.68 0.15 -2.21 16
30 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16
31 H 0.07 1.06 5.29 -2.39 -0.01 1.05 16
32 H 0.09 1.98 6.60 -2.39 -0.02 1.97 16
33 H 0.35 9.55 7.46 -89.69 -0.67 8.88 16
34 H 0.11 2.72 8.08 -2.39 -0.02 2.70 16
35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
36 H 0.40 18.13 7.90 -92.71 -0.73 17.40 16
37 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16
38 H 0.07 1.31 7.80 -2.39 -0.02 1.30 16
39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16
40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16
41 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16
42 H 0.12 1.78 5.07 -2.38 -0.01 1.77 16
43 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16
44 H 0.10 1.18 5.28 -2.39 -0.01 1.17 16
45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16
46 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16
47 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16
48 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16
49 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
50 H 0.06 1.31 7.91 -2.39 -0.02 1.29 16
Total: -1.00 -69.94 388.13 0.13 -69.81
By element:
Atomic # 1 Polarization: 39.72 SS G_CDS: -0.43 Total: 39.29 kcal
Atomic # 6 Polarization: 9.87 SS G_CDS: 6.02 Total: 15.89 kcal
Atomic # 7 Polarization: -104.35 SS G_CDS: -5.79 Total: -110.14 kcal
Atomic # 8 Polarization: -56.97 SS G_CDS: -1.70 Total: -58.67 kcal
Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal
Total: -69.94 0.13 -69.81 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725554425.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.187 kcal
(2) G-P(sol) polarization free energy of solvation -69.937 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.123 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.126 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.811 kcal
(6) G-S(sol) free energy of system = (1) + (5) -131.998 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds