Wall clock time and date at job start Tue Mar 31 2020 23:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.48260 * 2 1 4 4 C 1.53087 * 109.48004 * 239.97239 * 2 1 3 5 5 C 1.53178 * 109.15937 * 182.40908 * 4 2 1 6 6 H 1.09009 * 109.54221 * 176.93830 * 5 4 2 7 7 C 1.50700 * 109.54478 * 297.11331 * 5 4 2 8 8 O 1.21279 * 120.00292 * 359.82732 * 7 5 4 9 9 N 1.34775 * 119.99993 * 179.82272 * 7 5 4 10 10 C 1.46499 * 120.00414 * 180.02562 * 9 7 5 11 11 C 1.52993 * 109.47490 * 174.92756 * 10 9 7 12 12 N 1.46896 * 115.55138 * 325.12248 * 11 10 9 13 13 C 1.46904 * 111.00075 * 148.71509 * 12 11 10 14 14 C 1.50702 * 109.46861 * 184.39426 * 13 12 11 15 15 O 1.21285 * 120.00181 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99673 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99726 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00360 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99484 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99653 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00299 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47215 * 89.99570 * 21 19 17 23 23 H 1.48505 * 109.46837 * 209.99699 * 21 19 17 24 24 H 1.48501 * 109.47096 * 329.99483 * 21 19 17 25 25 C 1.53001 * 117.50080 * 179.44940 * 11 10 9 26 26 C 1.52993 * 60.03405 * 252.47534 * 25 11 10 27 27 C 1.53175 * 109.11020 * 57.03214 * 5 4 2 28 28 C 1.53288 * 109.05887 * 303.05204 * 27 5 4 29 29 O 1.42902 * 109.45940 * 57.56053 * 28 27 5 30 30 H 1.08997 * 109.46872 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47089 * 300.02680 * 1 2 3 32 32 H 1.08999 * 109.46552 * 60.02562 * 1 2 3 33 33 H 1.08999 * 109.51998 * 62.50679 * 4 2 1 34 34 H 1.08994 * 109.57971 * 302.34587 * 4 2 1 35 35 H 0.97007 * 120.00000 * 0.02562 * 9 7 5 36 36 H 1.09002 * 109.46379 * 54.92738 * 10 9 7 37 37 H 1.08999 * 109.47120 * 294.93109 * 10 9 7 38 38 H 1.00907 * 111.00157 * 272.67342 * 12 11 10 39 39 H 1.08997 * 109.47045 * 304.39512 * 13 12 11 40 40 H 1.09004 * 109.46714 * 64.40157 * 13 12 11 41 41 H 0.96997 * 119.99773 * 0.02562 * 16 14 13 42 42 H 0.96995 * 120.00139 * 180.02562 * 20 19 17 43 43 H 1.09009 * 117.49654 * 359.97438 * 25 11 10 44 44 H 1.08996 * 117.50024 * 144.97318 * 25 11 10 45 45 H 1.09003 * 117.49732 * 107.50042 * 26 25 11 46 46 H 1.08999 * 117.50050 * 252.51733 * 26 25 11 47 47 H 1.08995 * 109.52676 * 62.87422 * 27 5 4 48 48 H 1.09002 * 109.52371 * 183.06911 * 27 5 4 49 49 H 1.08996 * 109.46081 * 297.56092 * 28 27 5 50 50 H 1.09002 * 109.46272 * 177.56024 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2495 5 6 3.5712 -0.7708 -1.2120 6 1 3.9393 -1.3312 -2.0715 7 6 4.1212 0.6317 -1.2516 8 8 3.3651 1.5783 -1.3078 9 7 5.4534 0.8341 -1.2245 10 6 5.9882 2.1974 -1.2624 11 6 7.5081 2.1540 -1.0934 12 7 8.0165 1.1049 -0.1996 13 6 9.3441 0.6452 -0.6289 14 6 9.7851 -0.5014 0.2439 15 8 9.0644 -0.8970 1.1355 16 7 10.9806 -1.0872 0.0337 17 6 11.3817 -2.1306 0.8274 18 1 10.7395 -2.4835 1.6208 19 6 12.6140 -2.7349 0.6102 20 7 12.9982 -3.7354 1.3707 21 14 13.7243 -2.1251 -0.7626 22 1 14.6176 -1.0600 -0.2405 23 1 14.5445 -3.2528 -1.2735 24 1 12.8935 -1.5780 -1.8651 25 6 8.2601 3.4862 -1.1185 26 6 8.3658 2.5265 -2.3053 27 6 4.0195 -1.4609 0.0798 28 6 3.4307 -0.7094 1.2791 29 8 2.0066 -0.6743 1.1664 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5142 0.8897 32 1 -0.3632 0.5134 -0.8902 33 1 1.7149 -0.1842 -2.1398 34 1 1.6444 -1.7374 -1.2722 35 1 6.0582 0.0769 -1.1799 36 1 5.5493 2.7823 -0.4541 37 1 5.7420 2.6578 -2.2192 38 1 8.0363 1.4237 0.7577 39 1 9.2960 0.3146 -1.6664 40 1 10.0580 1.4642 -0.5411 41 1 11.5572 -0.7705 -0.6792 42 1 13.8585 -4.1570 1.2194 43 1 7.6720 4.3936 -1.2559 44 1 9.1318 3.5844 -0.4715 45 1 7.8472 2.8025 -3.2235 46 1 9.3069 1.9930 -2.4389 47 1 3.6631 -2.4910 0.0852 48 1 5.1078 -1.4507 0.1395 49 1 3.8192 0.3088 1.2959 50 1 3.7100 -1.2203 2.2006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733256770.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:15 Heat of formation + Delta-G solvation = -89.649231 kcal Electronic energy + Delta-G solvation = -30494.747932 eV Core-core repulsion = 26329.783759 eV Total energy + Delta-G solvation = -4164.964173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75089 -39.49687 -38.32259 -37.83215 -34.46134 -34.12127 -33.72091 -32.72131 -32.44924 -31.71373 -28.14713 -27.81701 -26.64445 -24.48151 -23.94149 -22.74071 -22.68123 -21.49787 -20.06928 -19.46244 -19.23502 -18.46312 -17.08673 -16.69931 -16.30040 -16.21117 -15.85651 -15.52005 -15.37558 -15.08974 -14.93890 -14.65530 -14.36153 -14.00095 -13.84844 -13.79103 -13.29395 -13.18558 -12.67841 -12.64410 -12.51334 -12.43095 -12.31953 -12.12227 -12.07053 -11.96700 -11.89197 -11.50899 -11.26760 -11.17493 -11.13538 -10.81545 -10.66879 -10.52573 -10.24970 -10.05235 -9.83198 -9.65550 -9.28516 -8.99528 -8.73116 -8.33133 -8.25726 -6.38623 -3.90553 2.58683 2.95314 2.99912 3.06088 3.09157 3.52855 3.62383 3.76876 3.78139 4.02932 4.40009 4.47178 4.54005 4.59682 4.66398 4.72775 4.73587 4.85883 5.01557 5.11981 5.19665 5.29824 5.37303 5.38772 5.43420 5.45957 5.49430 5.51928 5.54204 5.55863 5.64113 5.65936 5.72362 5.74620 5.78736 5.81297 5.84986 5.91940 5.98135 6.07149 6.14358 6.43071 6.87430 7.25737 7.32460 7.49255 7.57049 8.05620 8.21778 8.50668 8.86657 9.33712 9.72436 10.74280 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.002713 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.731250 B =10318.427055 C =11756.489275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 H 0.083 0.917 4 C -0.126 4.126 5 C -0.112 4.112 6 H 0.100 0.900 7 C 0.516 3.484 8 O -0.550 6.550 9 N -0.709 5.709 10 C 0.174 3.826 11 C 0.035 3.965 12 N -0.628 5.628 13 C 0.044 3.956 14 C 0.448 3.552 15 O -0.563 6.563 16 N -0.588 5.588 17 C -0.306 4.306 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.879 5.879 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.270 1.270 25 C -0.202 4.202 26 C -0.180 4.180 27 C -0.149 4.149 28 C 0.062 3.938 29 O -0.384 6.384 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.416 0.584 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.358 0.642 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.370 0.630 42 H 0.274 0.726 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.049 0.951 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.501 11.227 -9.319 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.017 3.983 3 H 0.101 0.899 4 C -0.164 4.164 5 C -0.133 4.133 6 H 0.118 0.882 7 C 0.302 3.698 8 O -0.429 6.429 9 N -0.361 5.361 10 C 0.049 3.951 11 C -0.058 4.058 12 N -0.260 5.260 13 C -0.088 4.088 14 C 0.234 3.766 15 O -0.445 6.445 16 N -0.228 5.228 17 C -0.435 4.435 18 H 0.138 0.862 19 C -0.161 4.161 20 N -0.519 5.519 21 Si 0.706 3.294 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.195 1.195 25 C -0.242 4.242 26 C -0.217 4.217 27 C -0.187 4.187 28 C -0.014 4.014 29 O -0.303 6.303 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.253 0.747 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.180 0.820 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.203 0.797 42 H 0.085 0.915 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.101 0.899 48 H 0.107 0.893 49 H 0.067 0.933 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.800 10.849 -8.851 21.869 hybrid contribution 2.421 0.827 -1.092 2.782 sum -14.379 11.676 -9.944 21.023 Atomic orbital electron populations 1.21733 0.93563 1.02374 1.02211 1.22341 0.94703 0.96889 0.84356 0.89940 1.21988 0.92977 1.01716 0.99737 1.21412 0.97384 0.93799 1.00702 0.88180 1.20610 0.82233 0.91322 0.75628 1.90625 1.57785 1.44038 1.50448 1.45870 1.06787 1.09607 1.73878 1.20646 0.88640 0.84295 1.01562 1.21970 0.92948 0.92122 0.98803 1.59634 1.24863 1.35493 1.06015 1.21868 0.89844 0.96920 1.00181 1.19631 0.83013 0.86356 0.87629 1.90573 1.53788 1.65750 1.34364 1.42201 1.16711 1.32230 1.31632 1.19420 1.02966 1.07903 1.13188 0.86220 1.25050 0.97093 0.96228 0.97741 1.69618 1.21632 1.22256 1.38349 0.86679 0.81388 0.79393 0.81953 1.19652 1.20103 1.19523 1.23540 1.03492 0.94863 1.02271 1.23523 1.02230 1.02978 0.93012 1.22251 1.02495 1.00464 0.93453 1.22561 0.80900 0.99611 0.98360 1.87892 1.20914 1.78180 1.43336 0.92222 0.92096 0.91282 0.90428 0.90640 0.74688 0.91059 0.91277 0.81997 0.89029 0.93446 0.79739 0.91528 0.88240 0.88409 0.88132 0.87737 0.89885 0.89263 0.93317 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.57 37.16 0.36 -1.01 16 2 C 0.07 0.88 2.98 -26.68 -0.08 0.80 16 3 H 0.08 1.14 5.81 -51.93 -0.30 0.84 16 4 C -0.13 -1.31 4.56 -26.59 -0.12 -1.43 16 5 C -0.11 -1.18 3.04 -91.59 -0.28 -1.46 16 6 H 0.10 0.90 8.14 -51.92 -0.42 0.47 16 7 C 0.52 6.34 5.82 -10.99 -0.06 6.28 16 8 O -0.55 -8.13 13.84 5.56 0.08 -8.05 16 9 N -0.71 -8.07 5.28 -60.30 -0.32 -8.39 16 10 C 0.17 1.85 5.90 -4.05 -0.02 1.82 16 11 C 0.03 0.36 2.88 -131.57 -0.38 -0.02 16 12 N -0.63 -8.19 5.17 -101.18 -0.52 -8.71 16 13 C 0.04 0.64 4.78 -4.97 -0.02 0.61 16 14 C 0.45 9.29 7.83 -10.98 -0.09 9.20 16 15 O -0.56 -13.90 15.87 5.55 0.09 -13.81 16 16 N -0.59 -13.15 5.09 -10.96 -0.06 -13.21 16 17 C -0.31 -8.30 10.16 -14.93 -0.15 -8.45 16 18 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 19 C 0.04 1.12 5.50 -17.46 -0.10 1.02 16 20 N -0.88 -25.00 13.96 55.50 0.77 -24.22 16 21 Si 0.88 18.65 27.74 -169.99 -4.71 13.93 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.16 6.52 56.52 0.37 -4.79 16 25 C -0.20 -1.79 9.81 -26.73 -0.26 -2.05 16 26 C -0.18 -1.62 9.07 -26.70 -0.24 -1.86 16 27 C -0.15 -1.62 5.58 -26.49 -0.15 -1.77 16 28 C 0.06 0.76 6.62 37.31 0.25 1.01 16 29 O -0.38 -5.07 10.41 -35.23 -0.37 -5.44 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.42 4.87 7.15 -40.82 -0.29 4.58 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 38 H 0.36 5.02 8.68 -39.29 -0.34 4.68 16 39 H 0.09 1.18 6.89 -51.93 -0.36 0.83 16 40 H 0.05 0.60 7.33 -51.93 -0.38 0.22 16 41 H 0.37 7.24 5.76 -40.82 -0.24 7.01 16 42 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 44 H 0.10 0.90 7.89 -51.93 -0.41 0.49 16 45 H 0.10 0.79 8.06 -51.93 -0.42 0.38 16 46 H 0.10 0.96 5.84 -51.93 -0.30 0.66 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.09 1.03 7.51 -51.93 -0.39 0.64 16 49 H 0.05 0.64 7.38 -51.93 -0.38 0.26 16 50 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 395.36 15.07 5.96 5.96 Total: -1.00 -31.88 395.36 -8.43 -40.32 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -8.00 Total: 18.94 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.35 Total: 2.69 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.12 Total: -54.53 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.20 Total: -27.30 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.71 Total: 13.93 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.88 -8.43 -40.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733256770.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.333 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds