Wall clock time and date at job start Tue Mar 31 2020 23:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.48260 * 2 1 4 4 C 1.53087 * 109.48004 * 239.97239 * 2 1 3 5 5 C 1.53178 * 109.15937 * 182.40908 * 4 2 1 6 6 H 1.09009 * 109.54221 * 176.93830 * 5 4 2 7 7 C 1.50700 * 109.54478 * 297.11331 * 5 4 2 8 8 O 1.21279 * 120.00292 * 359.82732 * 7 5 4 9 9 N 1.34775 * 119.99993 * 179.82272 * 7 5 4 10 10 C 1.46499 * 120.00414 * 180.02562 * 9 7 5 11 11 C 1.52993 * 109.47490 * 174.92756 * 10 9 7 12 12 N 1.46896 * 115.55138 * 325.12248 * 11 10 9 13 13 C 1.46904 * 111.00075 * 148.71509 * 12 11 10 14 14 C 1.50702 * 109.46861 * 184.39426 * 13 12 11 15 15 O 1.21285 * 120.00181 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99673 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99726 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00360 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99484 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99653 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00299 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47215 * 89.99570 * 21 19 17 23 23 H 1.48505 * 109.46837 * 209.99699 * 21 19 17 24 24 H 1.48501 * 109.47096 * 329.99483 * 21 19 17 25 25 C 1.53001 * 117.50080 * 179.44940 * 11 10 9 26 26 C 1.52993 * 60.03405 * 252.47534 * 25 11 10 27 27 C 1.53175 * 109.11020 * 57.03214 * 5 4 2 28 28 C 1.53288 * 109.05887 * 303.05204 * 27 5 4 29 29 O 1.42902 * 109.45940 * 57.56053 * 28 27 5 30 30 H 1.08997 * 109.46872 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47089 * 300.02680 * 1 2 3 32 32 H 1.08999 * 109.46552 * 60.02562 * 1 2 3 33 33 H 1.08999 * 109.51998 * 62.50679 * 4 2 1 34 34 H 1.08994 * 109.57971 * 302.34587 * 4 2 1 35 35 H 0.97007 * 120.00000 * 0.02562 * 9 7 5 36 36 H 1.09002 * 109.46379 * 54.92738 * 10 9 7 37 37 H 1.08999 * 109.47120 * 294.93109 * 10 9 7 38 38 H 1.00907 * 111.00157 * 272.67342 * 12 11 10 39 39 H 1.08997 * 109.47045 * 304.39512 * 13 12 11 40 40 H 1.09004 * 109.46714 * 64.40157 * 13 12 11 41 41 H 0.96997 * 119.99773 * 0.02562 * 16 14 13 42 42 H 0.96995 * 120.00139 * 180.02562 * 20 19 17 43 43 H 1.09009 * 117.49654 * 359.97438 * 25 11 10 44 44 H 1.08996 * 117.50024 * 144.97318 * 25 11 10 45 45 H 1.09003 * 117.49732 * 107.50042 * 26 25 11 46 46 H 1.08999 * 117.50050 * 252.51733 * 26 25 11 47 47 H 1.08995 * 109.52676 * 62.87422 * 27 5 4 48 48 H 1.09002 * 109.52371 * 183.06911 * 27 5 4 49 49 H 1.08996 * 109.46081 * 297.56092 * 28 27 5 50 50 H 1.09002 * 109.46272 * 177.56024 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2495 5 6 3.5712 -0.7708 -1.2120 6 1 3.9393 -1.3312 -2.0715 7 6 4.1212 0.6317 -1.2516 8 8 3.3651 1.5783 -1.3078 9 7 5.4534 0.8341 -1.2245 10 6 5.9882 2.1974 -1.2624 11 6 7.5081 2.1540 -1.0934 12 7 8.0165 1.1049 -0.1996 13 6 9.3441 0.6452 -0.6289 14 6 9.7851 -0.5014 0.2439 15 8 9.0644 -0.8970 1.1355 16 7 10.9806 -1.0872 0.0337 17 6 11.3817 -2.1306 0.8274 18 1 10.7395 -2.4835 1.6208 19 6 12.6140 -2.7349 0.6102 20 7 12.9982 -3.7354 1.3707 21 14 13.7243 -2.1251 -0.7626 22 1 14.6176 -1.0600 -0.2405 23 1 14.5445 -3.2528 -1.2735 24 1 12.8935 -1.5780 -1.8651 25 6 8.2601 3.4862 -1.1185 26 6 8.3658 2.5265 -2.3053 27 6 4.0195 -1.4609 0.0798 28 6 3.4307 -0.7094 1.2791 29 8 2.0066 -0.6743 1.1664 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5142 0.8897 32 1 -0.3632 0.5134 -0.8902 33 1 1.7149 -0.1842 -2.1398 34 1 1.6444 -1.7374 -1.2722 35 1 6.0582 0.0769 -1.1799 36 1 5.5493 2.7823 -0.4541 37 1 5.7420 2.6578 -2.2192 38 1 8.0363 1.4237 0.7577 39 1 9.2960 0.3146 -1.6664 40 1 10.0580 1.4642 -0.5411 41 1 11.5572 -0.7705 -0.6792 42 1 13.8585 -4.1570 1.2194 43 1 7.6720 4.3936 -1.2559 44 1 9.1318 3.5844 -0.4715 45 1 7.8472 2.8025 -3.2235 46 1 9.3069 1.9930 -2.4389 47 1 3.6631 -2.4910 0.0852 48 1 5.1078 -1.4507 0.1395 49 1 3.8192 0.3088 1.2959 50 1 3.7100 -1.2203 2.2006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733256770.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:14 Heat of formation + Delta-G solvation = -114.675763 kcal Electronic energy + Delta-G solvation = -30495.833164 eV Core-core repulsion = 26329.783759 eV Total energy + Delta-G solvation = -4166.049405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.69187 -40.64630 -39.63878 -38.94995 -36.02361 -35.40060 -34.65509 -33.80496 -33.60353 -33.41350 -29.11865 -28.76741 -27.96004 -25.80410 -25.14368 -23.65723 -23.44360 -22.41443 -21.31975 -20.91985 -20.25122 -20.08935 -18.26869 -17.64577 -17.27997 -17.24703 -17.05577 -16.73569 -16.59089 -16.42431 -15.98674 -15.83236 -15.31928 -15.25511 -15.01965 -14.81741 -14.68517 -14.31380 -14.18305 -13.99391 -13.54648 -13.37230 -13.30978 -13.26701 -12.94249 -12.91121 -12.88601 -12.80355 -12.40403 -12.28195 -12.05625 -11.99405 -11.94553 -11.70605 -11.49651 -11.47143 -11.03839 -10.79276 -10.40342 -10.24621 -10.23262 -9.92881 -9.37235 -8.39938 -6.00562 1.30513 1.35981 1.44951 1.62952 1.97182 2.19339 2.23714 2.58365 2.79304 2.84616 3.16701 3.30323 3.58107 3.66239 3.72555 3.78117 3.82481 3.96204 3.96831 4.13664 4.17460 4.25374 4.36552 4.42660 4.46390 4.53606 4.61317 4.66440 4.68556 4.72207 4.76706 4.81447 4.84355 4.85147 4.97117 5.00665 5.06020 5.08391 5.19158 5.22489 5.30347 5.50044 5.54602 5.87410 6.00614 6.26010 6.29831 6.60395 6.62480 6.89997 7.27298 7.41515 7.97809 8.77569 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.002713 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.731250 B =10318.427055 C =11756.489275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.069 3.931 3 H 0.059 0.941 4 C -0.122 4.122 5 C -0.110 4.110 6 H 0.122 0.878 7 C 0.513 3.487 8 O -0.577 6.577 9 N -0.705 5.705 10 C 0.175 3.825 11 C 0.023 3.977 12 N -0.639 5.639 13 C 0.062 3.938 14 C 0.450 3.550 15 O -0.608 6.608 16 N -0.591 5.591 17 C -0.325 4.325 18 H 0.057 0.943 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.963 3.037 22 H -0.259 1.259 23 H -0.278 1.278 24 H -0.228 1.228 25 C -0.192 4.192 26 C -0.169 4.169 27 C -0.142 4.142 28 C 0.060 3.940 29 O -0.397 6.397 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.415 0.585 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.350 0.650 39 H 0.119 0.881 40 H 0.076 0.924 41 H 0.389 0.611 42 H 0.278 0.722 43 H 0.112 0.888 44 H 0.097 0.903 45 H 0.115 0.885 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.032 0.968 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.966 12.942 -12.774 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.012 3.988 3 H 0.077 0.923 4 C -0.160 4.160 5 C -0.131 4.131 6 H 0.140 0.860 7 C 0.300 3.700 8 O -0.458 6.458 9 N -0.356 5.356 10 C 0.051 3.949 11 C -0.069 4.069 12 N -0.271 5.271 13 C -0.070 4.070 14 C 0.238 3.762 15 O -0.492 6.492 16 N -0.233 5.233 17 C -0.454 4.454 18 H 0.075 0.925 19 C -0.215 4.215 20 N -0.576 5.576 21 Si 0.783 3.217 22 H -0.184 1.184 23 H -0.203 1.203 24 H -0.152 1.152 25 C -0.232 4.232 26 C -0.206 4.206 27 C -0.180 4.180 28 C -0.016 4.016 29 O -0.317 6.317 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.252 0.748 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.170 0.830 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.224 0.776 42 H 0.088 0.912 43 H 0.130 0.870 44 H 0.116 0.884 45 H 0.134 0.866 46 H 0.128 0.872 47 H 0.112 0.888 48 H 0.100 0.900 49 H 0.051 0.949 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.276 12.594 -12.329 23.990 hybrid contribution 2.127 0.324 0.115 2.155 sum -14.149 12.918 -12.213 22.721 Atomic orbital electron populations 1.21739 0.91940 1.03080 1.02796 1.22429 0.96042 0.95723 0.84650 0.92342 1.21972 0.92741 1.02318 0.98977 1.21463 0.97619 0.92910 1.01130 0.86025 1.20916 0.82294 0.91733 0.75071 1.90614 1.58384 1.45011 1.51835 1.45890 1.06544 1.09979 1.73224 1.20671 0.88974 0.83747 1.01539 1.21864 0.92634 0.92625 0.99805 1.59535 1.24239 1.37243 1.06072 1.21755 0.91032 0.94799 0.99437 1.20901 0.81631 0.86634 0.87016 1.90560 1.54948 1.67224 1.36488 1.42025 1.17816 1.31594 1.31896 1.18984 1.02997 1.10141 1.13286 0.92536 1.26104 0.98530 0.95879 1.00953 1.69806 1.22581 1.24215 1.41005 0.85395 0.78784 0.78945 0.78587 1.18378 1.20323 1.15159 1.23586 1.02994 0.94546 1.02031 1.23637 1.01816 1.02084 0.93067 1.22175 1.01836 1.00830 0.93130 1.22573 0.80806 0.98946 0.99309 1.87875 1.21199 1.78294 1.44316 0.91387 0.92421 0.89848 0.90014 0.89194 0.74784 0.92350 0.90293 0.82991 0.86364 0.90573 0.77572 0.91240 0.86981 0.88431 0.86631 0.87236 0.88829 0.90048 0.94935 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.57 71.99 0.69 -1.87 16 2 C 0.07 1.61 2.98 30.63 0.09 1.70 16 3 H 0.06 1.67 5.81 -2.39 -0.01 1.65 16 4 C -0.12 -2.39 4.56 30.68 0.14 -2.25 16 5 C -0.11 -2.21 3.04 -11.42 -0.03 -2.25 16 6 H 0.12 1.92 8.14 -2.38 -0.02 1.90 16 7 C 0.51 12.36 5.82 87.66 0.51 12.87 16 8 O -0.58 -17.04 13.84 -3.03 -0.04 -17.09 16 9 N -0.71 -15.45 5.28 -463.08 -2.44 -17.90 16 10 C 0.18 3.49 5.90 86.38 0.51 4.00 16 11 C 0.02 0.42 2.88 3.55 0.01 0.43 16 12 N -0.64 -15.64 5.17 -474.03 -2.45 -18.09 16 13 C 0.06 1.59 4.78 85.56 0.41 2.00 16 14 C 0.45 18.41 7.83 87.66 0.69 19.10 16 15 O -0.61 -30.99 15.87 -3.04 -0.05 -31.04 16 16 N -0.59 -25.95 5.09 -306.98 -1.56 -27.51 16 17 C -0.32 -18.22 10.16 84.04 0.85 -17.37 16 18 H 0.06 3.81 7.39 -2.91 -0.02 3.78 16 19 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 20 N -0.94 -55.18 13.96 21.67 0.30 -54.87 16 21 Si 0.96 37.16 27.74 68.60 1.90 39.07 16 22 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 23 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 24 H -0.23 -7.23 6.52 99.48 0.65 -6.58 16 25 C -0.19 -2.76 9.81 30.59 0.30 -2.46 16 26 C -0.17 -2.33 9.07 30.62 0.28 -2.05 16 27 C -0.14 -3.06 5.58 30.75 0.17 -2.88 16 28 C 0.06 1.51 6.62 72.08 0.48 1.99 16 29 O -0.40 -10.58 10.41 -148.98 -1.55 -12.14 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.54 8.02 -2.39 -0.02 1.53 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.41 9.32 7.15 -92.70 -0.66 8.65 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.43 7.91 -2.39 -0.02 1.41 16 38 H 0.35 9.59 8.68 -89.69 -0.78 8.82 16 39 H 0.12 2.52 6.89 -2.39 -0.02 2.50 16 40 H 0.08 1.61 7.33 -2.39 -0.02 1.59 16 41 H 0.39 13.97 5.76 -92.71 -0.53 13.44 16 42 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 43 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 44 H 0.10 1.46 7.89 -2.39 -0.02 1.44 16 45 H 0.12 1.30 8.06 -2.39 -0.02 1.28 16 46 H 0.11 1.44 5.84 -2.39 -0.01 1.43 16 47 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.08 1.89 7.51 -2.39 -0.02 1.87 16 49 H 0.03 0.90 7.38 -2.39 -0.02 0.88 16 50 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -74.95 395.36 -1.39 -76.33 By element: Atomic # 1 Polarization: 53.72 SS G_CDS: -1.05 Total: 52.67 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 5.56 Total: 10.56 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -6.15 Total: -118.37 kcal Atomic # 8 Polarization: -58.62 SS G_CDS: -1.64 Total: -60.26 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 1.90 Total: 39.07 kcal Total: -74.95 -1.39 -76.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733256770.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.341 kcal (2) G-P(sol) polarization free energy of solvation -74.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds