Wall clock time and date at job start Tue Mar 31 2020 23:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.48040 * 2 1 4 4 C 1.53088 * 109.48369 * 120.02709 * 2 1 3 5 5 C 1.53176 * 109.16417 * 177.59409 * 4 2 1 6 6 H 1.09011 * 109.54320 * 183.06108 * 5 4 2 7 7 C 1.50700 * 109.54574 * 62.88695 * 5 4 2 8 8 O 1.21281 * 119.99669 * 359.97438 * 7 5 4 9 9 N 1.34772 * 119.99930 * 180.02562 * 7 5 4 10 10 C 1.46499 * 120.00091 * 179.97438 * 9 7 5 11 11 C 1.53004 * 109.47512 * 174.86694 * 10 9 7 12 12 N 1.46903 * 115.54620 * 325.03272 * 11 10 9 13 13 C 1.46898 * 110.99861 * 279.55899 * 12 11 10 14 14 C 1.50699 * 109.46773 * 174.70796 * 13 12 11 15 15 O 1.21290 * 120.00372 * 359.97438 * 14 13 12 16 16 N 1.34783 * 119.99874 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00037 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99787 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00136 * 179.97438 * 17 16 14 20 20 N 1.31406 * 119.99793 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00105 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47303 * 60.00313 * 21 19 17 23 23 H 1.48503 * 109.47297 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47035 * 300.00166 * 21 19 17 25 25 C 1.52998 * 117.51981 * 110.73324 * 11 10 9 26 26 C 1.52997 * 60.00187 * 107.48304 * 25 11 10 27 27 C 1.53177 * 109.03384 * 303.01425 * 5 4 2 28 28 C 1.53086 * 109.16264 * 56.98805 * 27 5 4 29 29 O 1.42906 * 109.41073 * 302.38524 * 28 27 5 30 30 H 1.08991 * 109.47082 * 299.97185 * 1 2 3 31 31 H 1.08998 * 109.46863 * 59.97574 * 1 2 3 32 32 H 1.09001 * 109.46901 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.52216 * 57.68226 * 4 2 1 34 34 H 1.09006 * 109.51865 * 297.49812 * 4 2 1 35 35 H 0.97007 * 120.00257 * 359.97438 * 9 7 5 36 36 H 1.08995 * 109.47486 * 54.86370 * 10 9 7 37 37 H 1.09005 * 109.46954 * 294.86472 * 10 9 7 38 38 H 1.00903 * 110.99449 * 155.60365 * 12 11 10 39 39 H 1.09002 * 109.47298 * 294.70355 * 13 12 11 40 40 H 1.08995 * 109.47217 * 54.70672 * 13 12 11 41 41 H 0.97000 * 119.99726 * 0.02562 * 16 14 13 42 42 H 0.97003 * 120.00139 * 179.97438 * 20 19 17 43 43 H 1.08997 * 117.50127 * 214.97344 * 25 11 10 44 44 H 1.09005 * 117.50205 * 359.97438 * 25 11 10 45 45 H 1.09002 * 117.49899 * 252.51271 * 26 25 11 46 46 H 1.09002 * 117.49992 * 107.48654 * 26 25 11 47 47 H 1.09010 * 109.51633 * 176.88764 * 27 5 4 48 48 H 1.09000 * 109.52666 * 297.07313 * 27 5 4 49 49 H 1.09004 * 109.48323 * 182.41097 * 28 27 5 50 50 H 1.09001 * 109.49646 * 62.37509 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 3.5711 -0.7707 1.2121 6 1 3.9393 -1.3312 2.0716 7 6 4.1211 0.6318 1.2517 8 8 3.3648 1.5784 1.3042 9 7 5.4534 0.8340 1.2277 10 6 5.9881 2.1974 1.2657 11 6 7.5145 2.1444 1.3568 12 7 8.0638 1.0336 2.1459 13 6 8.0099 1.3319 3.5833 14 6 8.4588 0.1236 4.3641 15 8 8.7906 -0.8866 3.7806 16 7 8.4917 0.1657 5.7108 17 6 8.8997 -0.9336 6.4212 18 1 9.1950 -1.8332 5.9016 19 6 8.9341 -0.8901 7.8096 20 7 8.5751 0.2046 8.4417 21 14 9.4906 -2.3878 8.7775 22 1 10.8827 -2.7351 8.3949 23 1 9.4367 -2.0862 10.2306 24 1 8.5941 -3.5328 8.4765 25 6 8.3121 2.6054 0.1353 26 6 8.2668 3.4761 1.3925 27 6 4.0176 -1.4600 -0.0809 28 6 3.4308 -0.7093 -1.2791 29 8 2.0066 -0.6743 -1.1664 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6443 -1.7374 1.2710 34 1 1.7149 -0.1842 2.1398 35 1 6.0583 0.0768 1.1854 36 1 5.5901 2.7198 2.1356 37 1 5.6965 2.7274 0.3588 38 1 9.0056 0.8159 1.8568 39 1 8.6674 2.1725 3.8049 40 1 6.9877 1.5863 3.8634 41 1 8.2261 0.9735 6.1775 42 1 8.5988 0.2349 9.4110 43 1 9.2444 2.0846 -0.0829 44 1 7.7495 2.9463 -0.7339 45 1 7.6744 4.3901 1.3507 46 1 9.1694 3.5281 2.0015 47 1 5.1059 -1.4497 -0.1420 48 1 3.6614 -2.4902 -0.0863 49 1 3.7100 -1.2204 -2.2005 50 1 3.8193 0.3090 -1.2961 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733256771.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:19 Heat of formation + Delta-G solvation = -100.952592 kcal Electronic energy + Delta-G solvation = -30484.023374 eV Core-core repulsion = 26318.569050 eV Total energy + Delta-G solvation = -4165.454324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.73643 -39.24596 -38.21148 -37.71419 -34.34607 -34.06161 -33.70721 -32.73427 -32.63403 -31.23708 -28.09811 -27.44859 -26.60727 -24.41211 -24.15320 -22.82258 -22.56501 -21.50258 -20.09524 -19.30390 -19.20091 -17.93274 -16.87809 -16.60194 -16.39669 -16.29283 -15.90665 -15.55959 -15.25595 -15.00427 -14.55150 -14.52312 -14.26314 -14.02593 -13.87130 -13.75610 -13.46077 -13.24855 -12.70941 -12.52996 -12.47842 -12.32773 -12.24072 -12.08981 -11.99356 -11.77372 -11.61536 -11.51074 -11.21704 -11.11487 -10.90928 -10.84163 -10.55737 -10.48362 -10.28664 -10.20158 -9.81496 -9.55019 -9.29381 -8.93987 -8.56533 -8.21811 -8.01945 -6.46371 -3.87679 2.65392 3.10246 3.16225 3.22733 3.26574 3.58314 3.69409 3.84064 3.94305 4.19482 4.45776 4.49029 4.56742 4.66270 4.67146 4.75817 4.80360 5.02547 5.07433 5.11606 5.19739 5.28168 5.35469 5.43792 5.46895 5.47219 5.54811 5.57409 5.59323 5.64702 5.67735 5.68760 5.77721 5.81843 5.85033 5.90042 5.90640 5.91855 6.04659 6.13631 6.18573 6.49494 7.02851 7.17628 7.43425 7.50119 7.63546 8.00149 8.28308 8.55187 9.12382 9.48429 9.99196 10.71113 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.002842 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.288480 B = 9850.890645 C =11439.574879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 H 0.084 0.916 4 C -0.127 4.127 5 C -0.113 4.113 6 H 0.106 0.894 7 C 0.516 3.484 8 O -0.549 6.549 9 N -0.708 5.708 10 C 0.171 3.829 11 C 0.036 3.964 12 N -0.629 5.629 13 C 0.053 3.947 14 C 0.440 3.560 15 O -0.584 6.584 16 N -0.561 5.561 17 C -0.301 4.301 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.169 4.169 26 C -0.204 4.204 27 C -0.147 4.147 28 C 0.062 3.938 29 O -0.384 6.384 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.415 0.585 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.354 0.646 39 H 0.047 0.953 40 H 0.085 0.915 41 H 0.392 0.608 42 H 0.273 0.727 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.578 4.127 -16.934 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.018 3.982 3 H 0.102 0.898 4 C -0.165 4.165 5 C -0.135 4.135 6 H 0.124 0.876 7 C 0.302 3.698 8 O -0.428 6.428 9 N -0.361 5.361 10 C 0.046 3.954 11 C -0.058 4.058 12 N -0.260 5.260 13 C -0.079 4.079 14 C 0.225 3.775 15 O -0.469 6.469 16 N -0.198 5.198 17 C -0.431 4.431 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.207 4.207 26 C -0.244 4.244 27 C -0.185 4.185 28 C -0.015 4.015 29 O -0.303 6.303 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.253 0.747 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.175 0.825 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.100 0.900 48 H 0.102 0.898 49 H 0.112 0.888 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.587 3.699 -17.178 20.017 hybrid contribution 1.544 0.258 1.331 2.055 sum -8.043 3.957 -15.847 18.206 Atomic orbital electron populations 1.21734 0.93458 1.02409 1.02291 1.22374 0.94766 0.96909 0.84188 0.89814 1.21997 0.92958 1.01771 0.99777 1.21414 0.97434 0.93987 1.00631 0.87635 1.20576 0.82271 0.91265 0.75646 1.90626 1.57772 1.44011 1.50390 1.45852 1.06733 1.09585 1.73913 1.20662 0.88722 0.84237 1.01758 1.21909 0.93084 0.91195 0.99566 1.59707 1.28687 1.35170 1.02413 1.21655 1.01863 0.96626 0.87723 1.19750 0.85228 0.89442 0.83045 1.90519 1.53681 1.33367 1.69287 1.41855 1.58104 1.15478 1.04344 1.19640 1.41102 0.93751 0.88582 0.87957 1.25269 0.97403 0.98318 0.96862 1.69601 1.47810 1.27132 1.09615 0.85921 0.79338 0.80961 0.78021 1.19896 1.20941 1.19841 1.23316 1.02109 1.03011 0.92228 1.23540 1.03458 0.95818 1.01577 1.22192 1.01742 1.00715 0.93812 1.22520 0.81514 0.99406 0.98045 1.87880 1.20524 1.78304 1.43623 0.91105 0.92149 0.92211 0.90605 0.90145 0.74705 0.91104 0.91331 0.82547 0.93520 0.89640 0.77477 0.91746 0.88319 0.88107 0.88300 0.88372 0.90048 0.89785 0.88763 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.56 37.16 0.36 -1.03 16 2 C 0.07 0.88 2.98 -26.69 -0.08 0.80 16 3 H 0.08 1.15 5.80 -51.93 -0.30 0.85 16 4 C -0.13 -1.42 4.56 -26.60 -0.12 -1.54 16 5 C -0.11 -1.29 3.04 -91.59 -0.28 -1.57 16 6 H 0.11 1.19 8.14 -51.92 -0.42 0.76 16 7 C 0.52 6.84 5.82 -10.99 -0.06 6.78 16 8 O -0.55 -8.67 13.83 5.56 0.08 -8.59 16 9 N -0.71 -8.71 5.28 -60.29 -0.32 -9.03 16 10 C 0.17 2.00 5.73 -4.04 -0.02 1.98 16 11 C 0.04 0.39 2.12 -131.60 -0.28 0.11 16 12 N -0.63 -8.82 5.16 -101.22 -0.52 -9.34 16 13 C 0.05 0.88 5.95 -4.98 -0.03 0.85 16 14 C 0.44 9.87 7.83 -10.98 -0.09 9.79 16 15 O -0.58 -14.95 15.89 5.55 0.09 -14.86 16 16 N -0.56 -13.85 5.29 -10.96 -0.06 -13.91 16 17 C -0.30 -8.22 9.68 -14.94 -0.14 -8.37 16 18 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 21 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 C -0.17 -1.52 9.87 -26.73 -0.26 -1.78 16 26 C -0.20 -1.97 9.67 -26.73 -0.26 -2.23 16 27 C -0.15 -1.41 5.57 -26.60 -0.15 -1.56 16 28 C 0.06 0.64 6.62 37.20 0.25 0.88 16 29 O -0.38 -4.68 10.41 -35.23 -0.37 -5.05 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.94 8.03 -51.93 -0.42 0.52 16 35 H 0.42 5.15 7.17 -40.82 -0.29 4.86 16 36 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 37 H 0.07 0.74 7.91 -51.93 -0.41 0.33 16 38 H 0.35 5.09 8.39 -39.29 -0.33 4.76 16 39 H 0.05 0.71 7.64 -51.93 -0.40 0.31 16 40 H 0.09 1.39 8.00 -51.93 -0.42 0.98 16 41 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.10 0.86 8.07 -51.93 -0.42 0.44 16 44 H 0.10 0.79 8.05 -51.93 -0.42 0.37 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.10 1.00 7.88 -51.93 -0.41 0.59 16 47 H 0.08 0.72 7.52 -51.92 -0.39 0.33 16 48 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.05 0.52 7.38 -51.93 -0.38 0.14 16 LS Contribution 402.76 15.07 6.07 6.07 Total: -1.00 -31.25 402.76 -8.82 -40.07 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -8.22 Total: 18.80 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -1.27 Total: 3.63 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.17 Total: -55.78 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.20 Total: -28.51 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.25 -8.82 -40.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733256771.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.886 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds