Wall clock time and date at job start Tue Mar 31 2020 23:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.48040 * 2 1 4 4 C 1.53088 * 109.48369 * 120.02709 * 2 1 3 5 5 C 1.53176 * 109.16417 * 177.59409 * 4 2 1 6 6 H 1.09011 * 109.54320 * 183.06108 * 5 4 2 7 7 C 1.50700 * 109.54574 * 62.88695 * 5 4 2 8 8 O 1.21281 * 119.99669 * 359.97438 * 7 5 4 9 9 N 1.34772 * 119.99930 * 180.02562 * 7 5 4 10 10 C 1.46499 * 120.00091 * 179.97438 * 9 7 5 11 11 C 1.53004 * 109.47512 * 174.86694 * 10 9 7 12 12 N 1.46903 * 115.54620 * 325.03272 * 11 10 9 13 13 C 1.46898 * 110.99861 * 279.55899 * 12 11 10 14 14 C 1.50699 * 109.46773 * 174.70796 * 13 12 11 15 15 O 1.21290 * 120.00372 * 359.97438 * 14 13 12 16 16 N 1.34783 * 119.99874 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00037 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99787 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00136 * 179.97438 * 17 16 14 20 20 N 1.31406 * 119.99793 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00105 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47303 * 60.00313 * 21 19 17 23 23 H 1.48503 * 109.47297 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47035 * 300.00166 * 21 19 17 25 25 C 1.52998 * 117.51981 * 110.73324 * 11 10 9 26 26 C 1.52997 * 60.00187 * 107.48304 * 25 11 10 27 27 C 1.53177 * 109.03384 * 303.01425 * 5 4 2 28 28 C 1.53086 * 109.16264 * 56.98805 * 27 5 4 29 29 O 1.42906 * 109.41073 * 302.38524 * 28 27 5 30 30 H 1.08991 * 109.47082 * 299.97185 * 1 2 3 31 31 H 1.08998 * 109.46863 * 59.97574 * 1 2 3 32 32 H 1.09001 * 109.46901 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.52216 * 57.68226 * 4 2 1 34 34 H 1.09006 * 109.51865 * 297.49812 * 4 2 1 35 35 H 0.97007 * 120.00257 * 359.97438 * 9 7 5 36 36 H 1.08995 * 109.47486 * 54.86370 * 10 9 7 37 37 H 1.09005 * 109.46954 * 294.86472 * 10 9 7 38 38 H 1.00903 * 110.99449 * 155.60365 * 12 11 10 39 39 H 1.09002 * 109.47298 * 294.70355 * 13 12 11 40 40 H 1.08995 * 109.47217 * 54.70672 * 13 12 11 41 41 H 0.97000 * 119.99726 * 0.02562 * 16 14 13 42 42 H 0.97003 * 120.00139 * 179.97438 * 20 19 17 43 43 H 1.08997 * 117.50127 * 214.97344 * 25 11 10 44 44 H 1.09005 * 117.50205 * 359.97438 * 25 11 10 45 45 H 1.09002 * 117.49899 * 252.51271 * 26 25 11 46 46 H 1.09002 * 117.49992 * 107.48654 * 26 25 11 47 47 H 1.09010 * 109.51633 * 176.88764 * 27 5 4 48 48 H 1.09000 * 109.52666 * 297.07313 * 27 5 4 49 49 H 1.09004 * 109.48323 * 182.41097 * 28 27 5 50 50 H 1.09001 * 109.49646 * 62.37509 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 3.5711 -0.7707 1.2121 6 1 3.9393 -1.3312 2.0716 7 6 4.1211 0.6318 1.2517 8 8 3.3648 1.5784 1.3042 9 7 5.4534 0.8340 1.2277 10 6 5.9881 2.1974 1.2657 11 6 7.5145 2.1444 1.3568 12 7 8.0638 1.0336 2.1459 13 6 8.0099 1.3319 3.5833 14 6 8.4588 0.1236 4.3641 15 8 8.7906 -0.8866 3.7806 16 7 8.4917 0.1657 5.7108 17 6 8.8997 -0.9336 6.4212 18 1 9.1950 -1.8332 5.9016 19 6 8.9341 -0.8901 7.8096 20 7 8.5751 0.2046 8.4417 21 14 9.4906 -2.3878 8.7775 22 1 10.8827 -2.7351 8.3949 23 1 9.4367 -2.0862 10.2306 24 1 8.5941 -3.5328 8.4765 25 6 8.3121 2.6054 0.1353 26 6 8.2668 3.4761 1.3925 27 6 4.0176 -1.4600 -0.0809 28 6 3.4308 -0.7093 -1.2791 29 8 2.0066 -0.6743 -1.1664 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6443 -1.7374 1.2710 34 1 1.7149 -0.1842 2.1398 35 1 6.0583 0.0768 1.1854 36 1 5.5901 2.7198 2.1356 37 1 5.6965 2.7274 0.3588 38 1 9.0056 0.8159 1.8568 39 1 8.6674 2.1725 3.8049 40 1 6.9877 1.5863 3.8634 41 1 8.2261 0.9735 6.1775 42 1 8.5988 0.2349 9.4110 43 1 9.2444 2.0846 -0.0829 44 1 7.7495 2.9463 -0.7339 45 1 7.6744 4.3901 1.3507 46 1 9.1694 3.5281 2.0015 47 1 5.1059 -1.4497 -0.1420 48 1 3.6614 -2.4902 -0.0863 49 1 3.7100 -1.2204 -2.2005 50 1 3.8193 0.3090 -1.2961 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733256771.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:18 Heat of formation + Delta-G solvation = -123.912726 kcal Electronic energy + Delta-G solvation = -30485.019001 eV Core-core repulsion = 26318.569050 eV Total energy + Delta-G solvation = -4166.449950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70266 -40.44699 -39.58433 -38.88667 -36.00338 -35.35276 -34.62045 -33.90379 -33.57558 -33.19220 -28.94679 -28.45010 -28.12445 -25.90862 -25.27349 -23.67620 -23.36588 -22.42598 -21.19744 -20.94396 -20.19112 -19.89181 -18.04408 -17.67592 -17.34125 -17.24973 -17.03422 -16.94479 -16.43740 -16.24355 -15.98840 -15.81459 -15.49918 -15.35569 -14.93168 -14.74116 -14.64856 -14.28938 -14.10328 -13.58028 -13.52921 -13.49900 -13.34109 -13.27604 -12.94999 -12.91083 -12.82059 -12.81061 -12.43573 -12.38714 -12.13892 -12.04989 -11.85948 -11.69667 -11.49659 -11.46478 -11.11227 -10.78639 -10.32454 -10.23605 -10.02166 -9.95379 -9.40308 -8.47064 -5.95900 1.39232 1.41455 1.52083 1.62040 2.04502 2.14069 2.28697 2.67621 2.85724 2.91805 3.20355 3.42000 3.57309 3.66335 3.74102 3.79916 3.85145 3.93347 3.96921 4.13736 4.28182 4.29822 4.40179 4.42681 4.50355 4.53615 4.62927 4.65614 4.68640 4.73305 4.74625 4.76131 4.80999 4.84105 4.96798 4.98529 5.04298 5.08514 5.19208 5.21868 5.29668 5.40153 5.49265 5.83575 6.04792 6.30481 6.31971 6.58501 6.61360 7.11758 7.26022 7.55499 8.09765 8.70122 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.002842 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.288480 B = 9850.890645 C =11439.574879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.075 3.925 3 H 0.060 0.940 4 C -0.125 4.125 5 C -0.115 4.115 6 H 0.106 0.894 7 C 0.512 3.488 8 O -0.578 6.578 9 N -0.704 5.704 10 C 0.172 3.828 11 C 0.021 3.979 12 N -0.633 5.633 13 C 0.072 3.928 14 C 0.441 3.559 15 O -0.616 6.616 16 N -0.574 5.574 17 C -0.332 4.332 18 H 0.082 0.918 19 C -0.014 4.014 20 N -0.922 5.922 21 Si 0.992 3.008 22 H -0.270 1.270 23 H -0.273 1.273 24 H -0.271 1.271 25 C -0.149 4.149 26 C -0.197 4.197 27 C -0.140 4.140 28 C 0.059 3.941 29 O -0.395 6.395 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.416 0.584 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.353 0.647 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.394 0.606 42 H 0.277 0.723 43 H 0.104 0.896 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.095 0.905 49 H 0.115 0.885 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.332 4.054 -17.828 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.017 3.983 3 H 0.078 0.922 4 C -0.163 4.163 5 C -0.136 4.136 6 H 0.124 0.876 7 C 0.299 3.701 8 O -0.459 6.459 9 N -0.356 5.356 10 C 0.048 3.952 11 C -0.071 4.071 12 N -0.265 5.265 13 C -0.060 4.060 14 C 0.229 3.771 15 O -0.502 6.502 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.100 0.900 19 C -0.213 4.213 20 N -0.563 5.563 21 Si 0.815 3.185 22 H -0.195 1.195 23 H -0.197 1.197 24 H -0.196 1.196 25 C -0.187 4.187 26 C -0.237 4.237 27 C -0.178 4.178 28 C -0.018 4.018 29 O -0.315 6.315 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.253 0.747 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.173 0.827 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.228 0.772 42 H 0.086 0.914 43 H 0.122 0.878 44 H 0.136 0.864 45 H 0.129 0.871 46 H 0.114 0.886 47 H 0.109 0.891 48 H 0.113 0.887 49 H 0.133 0.867 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.332 3.647 -18.088 20.678 hybrid contribution 1.478 0.328 1.522 2.147 sum -7.854 3.975 -16.566 18.759 Atomic orbital electron populations 1.21736 0.92104 1.03073 1.02746 1.22335 0.95905 0.95655 0.84374 0.92176 1.21987 0.92943 1.02261 0.99145 1.21468 0.97539 0.92966 1.01663 0.87621 1.20926 0.82338 0.91740 0.75051 1.90613 1.58419 1.45053 1.51813 1.45868 1.06471 1.09938 1.73277 1.20687 0.89129 0.83837 1.01574 1.21823 0.92634 0.91428 1.01219 1.59611 1.28733 1.37062 1.01054 1.21408 1.02049 0.93926 0.88659 1.20749 0.83215 0.90638 0.82546 1.90490 1.54629 1.35291 1.69827 1.41944 1.58929 1.15046 1.05235 1.19631 1.42877 0.94173 0.89465 0.90043 1.26039 0.97023 1.01031 0.97239 1.69670 1.48116 1.28487 1.10028 0.85007 0.78850 0.77633 0.76989 1.19549 1.19739 1.19640 1.23409 1.01745 1.01494 0.92009 1.23582 1.02906 0.95391 1.01844 1.22177 1.02284 1.00865 0.92461 1.22659 0.80667 0.99181 0.99255 1.87866 1.21624 1.78206 1.43785 0.90458 0.91944 0.91382 0.89284 0.91118 0.74675 0.92674 0.90234 0.82660 0.91653 0.89209 0.77236 0.91359 0.87750 0.86399 0.87079 0.88641 0.89107 0.88693 0.86666 0.94559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.56 71.98 0.69 -1.94 16 2 C 0.07 1.74 2.98 30.62 0.09 1.83 16 3 H 0.06 1.70 5.80 -2.39 -0.01 1.68 16 4 C -0.13 -2.77 4.56 30.68 0.14 -2.63 16 5 C -0.12 -2.56 3.04 -11.42 -0.03 -2.60 16 6 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 7 C 0.51 13.57 5.82 87.66 0.51 14.08 16 8 O -0.58 -18.55 13.83 -3.03 -0.04 -18.60 16 9 N -0.70 -16.92 5.28 -463.06 -2.44 -19.36 16 10 C 0.17 3.86 5.73 86.38 0.50 4.35 16 11 C 0.02 0.44 2.12 3.53 0.01 0.44 16 12 N -0.63 -17.05 5.16 -474.15 -2.44 -19.49 16 13 C 0.07 2.31 5.95 85.56 0.51 2.82 16 14 C 0.44 19.92 7.83 87.66 0.69 20.61 16 15 O -0.62 -31.92 15.89 -3.06 -0.05 -31.97 16 16 N -0.57 -28.77 5.29 -306.98 -1.62 -30.40 16 17 C -0.33 -18.45 9.68 84.04 0.81 -17.63 16 18 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 19 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 20 N -0.92 -49.56 13.05 21.66 0.28 -49.27 16 21 Si 0.99 42.32 29.55 68.60 2.03 44.35 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 25 C -0.15 -2.26 9.87 30.59 0.30 -1.96 16 26 C -0.20 -3.33 9.67 30.59 0.30 -3.04 16 27 C -0.14 -2.52 5.57 30.68 0.17 -2.34 16 28 C 0.06 1.14 6.62 72.01 0.48 1.61 16 29 O -0.40 -9.30 10.41 -148.98 -1.55 -10.85 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.68 8.03 -2.38 -0.02 1.66 16 35 H 0.42 9.99 7.17 -92.70 -0.66 9.32 16 36 H 0.05 1.41 8.13 -2.39 -0.02 1.39 16 37 H 0.08 1.61 7.91 -2.38 -0.02 1.59 16 38 H 0.35 9.72 8.39 -89.69 -0.75 8.96 16 39 H 0.07 1.89 7.64 -2.39 -0.02 1.87 16 40 H 0.09 2.86 8.00 -2.39 -0.02 2.84 16 41 H 0.39 19.07 7.90 -92.71 -0.73 18.34 16 42 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 43 H 0.10 1.52 8.07 -2.39 -0.02 1.50 16 44 H 0.12 1.44 8.05 -2.38 -0.02 1.42 16 45 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.10 1.71 7.88 -2.39 -0.02 1.69 16 47 H 0.09 1.46 7.52 -2.38 -0.02 1.44 16 48 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 50 H 0.04 0.78 7.38 -2.39 -0.02 0.76 16 Total: -1.00 -67.68 402.76 -1.40 -69.08 By element: Atomic # 1 Polarization: 54.33 SS G_CDS: -1.18 Total: 53.15 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 5.62 Total: 13.35 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -6.23 Total: -118.52 kcal Atomic # 8 Polarization: -59.77 SS G_CDS: -1.64 Total: -61.41 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -67.68 -1.40 -69.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733256771.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.832 kcal (2) G-P(sol) polarization free energy of solvation -67.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds