Wall clock time and date at job start Tue Mar 31 2020 23:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.48041 * 2 1 4 4 C 1.53092 * 109.47698 * 120.02144 * 2 1 3 5 5 C 1.53174 * 109.16297 * 177.59187 * 4 2 1 6 6 H 1.09003 * 109.54317 * 62.88908 * 5 4 2 7 7 C 1.50699 * 109.54261 * 183.15030 * 5 4 2 8 8 O 1.21271 * 120.00595 * 0.02562 * 7 5 4 9 9 N 1.34783 * 119.99896 * 179.97438 * 7 5 4 10 10 C 1.46499 * 120.00006 * 180.02562 * 9 7 5 11 11 C 1.53001 * 109.46779 * 187.42717 * 10 9 7 12 12 N 1.46900 * 115.54970 * 270.32086 * 11 10 9 13 13 C 1.46908 * 111.00056 * 295.05028 * 12 11 10 14 14 C 1.50696 * 109.47066 * 187.06717 * 13 12 11 15 15 O 1.21297 * 120.00430 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99911 * 179.97438 * 14 13 12 17 17 C 1.37094 * 119.99742 * 179.97438 * 16 14 13 18 18 H 1.08003 * 120.00396 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99724 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99941 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99967 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46762 * 90.00248 * 21 19 17 23 23 H 1.48501 * 109.47347 * 210.00403 * 21 19 17 24 24 H 1.48500 * 109.47424 * 330.00445 * 21 19 17 25 25 C 1.53001 * 117.49900 * 124.65605 * 11 10 9 26 26 C 1.52994 * 117.50396 * 55.99396 * 11 10 9 27 27 C 1.53175 * 109.03995 * 303.02201 * 5 4 2 28 28 C 1.53089 * 109.16402 * 56.97319 * 27 5 4 29 29 O 1.42898 * 109.48264 * 239.97444 * 2 1 3 30 30 H 1.08998 * 109.47005 * 300.00264 * 1 2 3 31 31 H 1.09001 * 109.46876 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46647 * 60.00253 * 1 2 3 33 33 H 1.09006 * 109.52239 * 297.49854 * 4 2 1 34 34 H 1.08995 * 109.52398 * 57.68674 * 4 2 1 35 35 H 0.97008 * 119.99680 * 0.02562 * 9 7 5 36 36 H 1.09003 * 109.46921 * 307.42562 * 10 9 7 37 37 H 1.08995 * 109.47313 * 67.42756 * 10 9 7 38 38 H 1.00900 * 110.99743 * 58.99698 * 12 11 10 39 39 H 1.08996 * 109.46783 * 307.06917 * 13 12 11 40 40 H 1.08999 * 109.47037 * 67.06879 * 13 12 11 41 41 H 0.96999 * 120.00086 * 0.02562 * 16 14 13 42 42 H 0.97000 * 119.99692 * 179.97438 * 20 19 17 43 43 H 1.08997 * 117.49786 * 0.02562 * 25 11 10 44 44 H 1.09003 * 117.50072 * 145.01506 * 25 11 10 45 45 H 1.08998 * 117.50013 * 214.97445 * 26 11 10 46 46 H 1.08999 * 117.49751 * 0.02562 * 26 11 10 47 47 H 1.08999 * 109.52635 * 176.88735 * 27 5 4 48 48 H 1.09007 * 109.51544 * 297.07631 * 27 5 4 49 49 H 1.09009 * 109.47657 * 62.38190 * 28 27 5 50 50 H 1.09000 * 109.48204 * 182.39976 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5711 -0.7708 1.2124 6 1 3.9689 0.2436 1.2410 7 6 4.0798 -1.5473 2.3994 8 8 3.2969 -2.0169 3.1977 9 7 5.4051 -1.7208 2.5735 10 6 5.8996 -2.4762 3.7271 11 6 7.4245 -2.3686 3.7914 12 7 8.1642 -3.4032 3.0562 13 6 7.9353 -4.7308 3.6421 14 6 8.8391 -5.7362 2.9764 15 8 9.5989 -5.3819 2.0997 16 7 8.8033 -7.0292 3.3551 17 6 9.6252 -7.9440 2.7491 18 1 10.3016 -7.6285 1.9686 19 6 9.5886 -9.2769 3.1400 20 7 8.7659 -9.6607 4.0901 21 14 10.7089 -10.5233 2.3148 22 1 11.9942 -10.5996 3.0548 23 1 10.0549 -11.8565 2.3198 24 1 10.9684 -10.1045 0.9139 25 6 8.0419 -1.8476 5.0908 26 6 8.0324 -0.9655 3.8398 27 6 4.0177 -1.4601 -0.0805 28 6 3.4308 -0.7095 -1.2788 29 8 2.0067 -0.6741 -1.1664 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 1.7148 -0.1840 2.1399 34 1 1.6443 -1.7373 1.2712 35 1 6.0313 -1.3455 1.9347 36 1 5.4678 -2.0680 4.6409 37 1 5.6132 -3.5230 3.6260 38 1 7.9220 -3.3937 2.0767 39 1 8.1515 -4.6988 4.7099 40 1 6.8955 -5.0205 3.4904 41 1 8.1955 -7.3127 4.0559 42 1 8.7401 -10.5912 4.3626 43 1 7.3617 -1.5820 5.9000 44 1 8.9970 -2.2723 5.3999 45 1 8.9813 -0.8101 3.3266 46 1 7.3460 -0.1189 3.8264 47 1 5.1059 -1.4498 -0.1417 48 1 3.6613 -2.4902 -0.0859 49 1 3.8194 0.3088 -1.2957 50 1 3.7103 -1.2205 -2.2002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733256772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:22 Heat of formation + Delta-G solvation = -104.652185 kcal Electronic energy + Delta-G solvation = -29573.071069 eV Core-core repulsion = 25407.456319 eV Total energy + Delta-G solvation = -4165.614750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.70040 -39.35305 -38.54260 -37.72452 -34.43878 -34.04962 -33.89837 -33.07712 -32.80438 -31.19610 -28.41277 -27.57444 -26.56082 -24.73616 -24.11218 -23.08166 -22.52089 -21.12677 -20.27560 -19.64963 -19.21495 -17.88590 -17.55433 -16.73338 -16.55514 -16.34312 -16.04340 -15.59589 -15.27881 -15.17091 -14.76731 -14.60938 -14.46082 -14.18341 -14.07141 -13.74931 -13.46313 -13.38346 -12.96565 -12.77684 -12.64404 -12.50463 -12.26615 -12.23285 -11.75503 -11.60097 -11.56003 -11.51980 -11.43776 -11.15545 -11.04807 -10.82950 -10.65832 -10.40260 -10.37352 -10.22561 -10.04972 -9.65261 -9.51696 -9.27360 -8.59023 -8.14818 -7.97302 -6.42264 -3.83279 2.40300 2.82827 3.17344 3.26020 3.31583 3.40095 3.64697 3.88855 3.97239 4.19507 4.22766 4.28488 4.36080 4.43338 4.51775 4.75219 4.77061 4.81377 4.89072 4.97860 5.05374 5.06748 5.16909 5.23256 5.24430 5.30162 5.38765 5.41348 5.48366 5.53754 5.57401 5.58268 5.60856 5.70870 5.80862 5.82145 5.89904 5.93570 5.94783 6.11063 6.19557 6.25139 6.87420 7.11143 7.25595 7.51107 7.54452 7.99462 8.05055 8.60221 9.16992 9.53295 10.04562 10.75397 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.002197 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.711939 B =12742.546540 C =13868.496435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.058 0.942 4 C -0.129 4.129 5 C -0.109 4.109 6 H 0.097 0.903 7 C 0.517 3.483 8 O -0.538 6.538 9 N -0.723 5.723 10 C 0.126 3.874 11 C 0.014 3.986 12 N -0.625 5.625 13 C 0.051 3.949 14 C 0.441 3.559 15 O -0.583 6.583 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C -0.148 4.148 26 C -0.154 4.154 27 C -0.149 4.149 28 C 0.065 3.935 29 O -0.379 6.379 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.401 0.599 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.350 0.650 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.095 0.905 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.052 0.948 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.798 22.330 -3.866 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.076 0.924 4 C -0.167 4.167 5 C -0.130 4.130 6 H 0.115 0.885 7 C 0.303 3.697 8 O -0.415 6.415 9 N -0.375 5.375 10 C 0.000 4.000 11 C -0.079 4.079 12 N -0.256 5.256 13 C -0.082 4.082 14 C 0.227 3.773 15 O -0.467 6.467 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.542 5.542 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.186 4.186 26 C -0.192 4.192 27 C -0.188 4.188 28 C -0.012 4.012 29 O -0.298 6.298 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.236 0.764 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.170 0.830 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.111 0.889 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.071 0.929 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.406 22.013 -3.591 25.522 hybrid contribution -0.126 -0.921 -0.183 0.948 sum -12.532 21.091 -3.774 24.822 Atomic orbital electron populations 1.21761 0.92802 1.03235 1.02431 1.22133 0.95383 0.94802 0.84848 0.92415 1.22065 0.92876 1.03304 0.98503 1.21388 0.97895 1.00186 0.93544 0.88471 1.20552 0.82157 0.80289 0.86686 1.90713 1.55645 1.49486 1.45617 1.46034 1.07079 1.56318 1.28104 1.21461 0.92466 0.96887 0.89143 1.21700 0.89058 0.94739 1.02437 1.59944 1.56905 1.02363 1.06343 1.21673 0.97675 0.88746 1.00066 1.19760 0.87371 0.83233 0.86974 1.90522 1.42836 1.79221 1.34131 1.41861 1.36831 1.06007 1.35277 1.19693 1.17382 0.87710 1.18122 0.87927 1.25275 0.97862 0.98064 0.96783 1.69614 1.37203 1.18204 1.29196 0.85853 0.79556 0.79221 0.79624 1.20383 1.20922 1.19430 1.23092 1.02950 1.02161 0.90423 1.23050 1.02825 0.91635 1.01648 1.22230 1.01672 1.01242 0.93608 1.22548 0.81042 0.99500 0.98114 1.87958 1.20884 1.78010 1.42998 0.90967 0.91599 0.91786 0.90201 0.89994 0.76398 0.90603 0.90982 0.83003 0.89377 0.93683 0.77456 0.91844 0.88624 0.87579 0.87674 0.88851 0.90060 0.90144 0.92944 0.88268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.57 37.16 0.36 -0.62 16 2 C 0.09 0.66 3.26 -26.68 -0.09 0.57 16 3 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 4 C -0.13 -1.13 4.02 -26.59 -0.11 -1.24 16 5 C -0.11 -0.88 2.61 -91.59 -0.24 -1.12 16 6 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 7 C 0.52 5.74 7.16 -10.98 -0.08 5.66 16 8 O -0.54 -8.18 15.94 5.56 0.09 -8.09 16 9 N -0.72 -6.98 5.30 -60.30 -0.32 -7.30 16 10 C 0.13 1.43 5.78 -4.04 -0.02 1.41 16 11 C 0.01 0.16 1.79 -131.60 -0.24 -0.08 16 12 N -0.62 -9.45 6.12 -101.22 -0.62 -10.07 16 13 C 0.05 0.88 5.88 -4.97 -0.03 0.85 16 14 C 0.44 10.35 7.84 -10.99 -0.09 10.27 16 15 O -0.58 -15.68 15.93 5.54 0.09 -15.59 16 16 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 17 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 18 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 21 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.15 -1.55 10.05 -26.69 -0.27 -1.82 16 26 C -0.15 -1.45 9.80 -26.70 -0.26 -1.71 16 27 C -0.15 -1.12 5.30 -26.59 -0.14 -1.26 16 28 C 0.06 0.45 6.84 37.20 0.25 0.71 16 29 O -0.38 -3.54 10.41 -35.23 -0.37 -3.90 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.89 8.02 -51.93 -0.42 0.47 16 35 H 0.40 3.04 7.81 -40.82 -0.32 2.72 16 36 H 0.08 0.88 7.83 -51.93 -0.41 0.47 16 37 H 0.07 0.96 6.58 -51.93 -0.34 0.62 16 38 H 0.35 5.36 8.77 -39.29 -0.34 5.01 16 39 H 0.09 1.44 8.06 -51.93 -0.42 1.02 16 40 H 0.05 0.73 6.85 -51.93 -0.36 0.38 16 41 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.10 0.86 8.03 -51.93 -0.42 0.44 16 44 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.49 7.70 -51.93 -0.40 0.09 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 50 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 408.69 15.07 6.16 6.16 Total: -1.00 -33.67 408.69 -8.84 -42.51 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -8.33 Total: 14.89 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.19 Total: 3.60 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.27 Total: -55.68 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.19 Total: -27.58 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.67 -8.84 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733256772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.141 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds