Wall clock time and date at job start Tue Mar 31 2020 23:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.48041 * 2 1 4 4 C 1.53092 * 109.47698 * 120.02144 * 2 1 3 5 5 C 1.53174 * 109.16297 * 177.59187 * 4 2 1 6 6 H 1.09003 * 109.54317 * 62.88908 * 5 4 2 7 7 C 1.50699 * 109.54261 * 183.15030 * 5 4 2 8 8 O 1.21271 * 120.00595 * 0.02562 * 7 5 4 9 9 N 1.34783 * 119.99896 * 179.97438 * 7 5 4 10 10 C 1.46499 * 120.00006 * 180.02562 * 9 7 5 11 11 C 1.53001 * 109.46779 * 187.42717 * 10 9 7 12 12 N 1.46900 * 115.54970 * 270.32086 * 11 10 9 13 13 C 1.46908 * 111.00056 * 295.05028 * 12 11 10 14 14 C 1.50696 * 109.47066 * 187.06717 * 13 12 11 15 15 O 1.21297 * 120.00430 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99911 * 179.97438 * 14 13 12 17 17 C 1.37094 * 119.99742 * 179.97438 * 16 14 13 18 18 H 1.08003 * 120.00396 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99724 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99941 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99967 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46762 * 90.00248 * 21 19 17 23 23 H 1.48501 * 109.47347 * 210.00403 * 21 19 17 24 24 H 1.48500 * 109.47424 * 330.00445 * 21 19 17 25 25 C 1.53001 * 117.49900 * 124.65605 * 11 10 9 26 26 C 1.52994 * 117.50396 * 55.99396 * 11 10 9 27 27 C 1.53175 * 109.03995 * 303.02201 * 5 4 2 28 28 C 1.53089 * 109.16402 * 56.97319 * 27 5 4 29 29 O 1.42898 * 109.48264 * 239.97444 * 2 1 3 30 30 H 1.08998 * 109.47005 * 300.00264 * 1 2 3 31 31 H 1.09001 * 109.46876 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46647 * 60.00253 * 1 2 3 33 33 H 1.09006 * 109.52239 * 297.49854 * 4 2 1 34 34 H 1.08995 * 109.52398 * 57.68674 * 4 2 1 35 35 H 0.97008 * 119.99680 * 0.02562 * 9 7 5 36 36 H 1.09003 * 109.46921 * 307.42562 * 10 9 7 37 37 H 1.08995 * 109.47313 * 67.42756 * 10 9 7 38 38 H 1.00900 * 110.99743 * 58.99698 * 12 11 10 39 39 H 1.08996 * 109.46783 * 307.06917 * 13 12 11 40 40 H 1.08999 * 109.47037 * 67.06879 * 13 12 11 41 41 H 0.96999 * 120.00086 * 0.02562 * 16 14 13 42 42 H 0.97000 * 119.99692 * 179.97438 * 20 19 17 43 43 H 1.08997 * 117.49786 * 0.02562 * 25 11 10 44 44 H 1.09003 * 117.50072 * 145.01506 * 25 11 10 45 45 H 1.08998 * 117.50013 * 214.97445 * 26 11 10 46 46 H 1.08999 * 117.49751 * 0.02562 * 26 11 10 47 47 H 1.08999 * 109.52635 * 176.88735 * 27 5 4 48 48 H 1.09007 * 109.51544 * 297.07631 * 27 5 4 49 49 H 1.09009 * 109.47657 * 62.38190 * 28 27 5 50 50 H 1.09000 * 109.48204 * 182.39976 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5711 -0.7708 1.2124 6 1 3.9689 0.2436 1.2410 7 6 4.0798 -1.5473 2.3994 8 8 3.2969 -2.0169 3.1977 9 7 5.4051 -1.7208 2.5735 10 6 5.8996 -2.4762 3.7271 11 6 7.4245 -2.3686 3.7914 12 7 8.1642 -3.4032 3.0562 13 6 7.9353 -4.7308 3.6421 14 6 8.8391 -5.7362 2.9764 15 8 9.5989 -5.3819 2.0997 16 7 8.8033 -7.0292 3.3551 17 6 9.6252 -7.9440 2.7491 18 1 10.3016 -7.6285 1.9686 19 6 9.5886 -9.2769 3.1400 20 7 8.7659 -9.6607 4.0901 21 14 10.7089 -10.5233 2.3148 22 1 11.9942 -10.5996 3.0548 23 1 10.0549 -11.8565 2.3198 24 1 10.9684 -10.1045 0.9139 25 6 8.0419 -1.8476 5.0908 26 6 8.0324 -0.9655 3.8398 27 6 4.0177 -1.4601 -0.0805 28 6 3.4308 -0.7095 -1.2788 29 8 2.0067 -0.6741 -1.1664 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 1.7148 -0.1840 2.1399 34 1 1.6443 -1.7373 1.2712 35 1 6.0313 -1.3455 1.9347 36 1 5.4678 -2.0680 4.6409 37 1 5.6132 -3.5230 3.6260 38 1 7.9220 -3.3937 2.0767 39 1 8.1515 -4.6988 4.7099 40 1 6.8955 -5.0205 3.4904 41 1 8.1955 -7.3127 4.0559 42 1 8.7401 -10.5912 4.3626 43 1 7.3617 -1.5820 5.9000 44 1 8.9970 -2.2723 5.3999 45 1 8.9813 -0.8101 3.3266 46 1 7.3460 -0.1189 3.8264 47 1 5.1059 -1.4498 -0.1417 48 1 3.6613 -2.4902 -0.0859 49 1 3.8194 0.3088 -1.2957 50 1 3.7103 -1.2205 -2.2002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733256772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:21 Heat of formation + Delta-G solvation = -130.772781 kcal Electronic energy + Delta-G solvation = -29574.203743 eV Core-core repulsion = 25407.456319 eV Total energy + Delta-G solvation = -4166.747424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50016 -40.40640 -39.81526 -39.00987 -36.03705 -35.32597 -34.64041 -34.11282 -33.65378 -33.22958 -29.08726 -28.55125 -28.04793 -25.94300 -25.41171 -23.71693 -23.33590 -21.81725 -21.20322 -21.00124 -20.52972 -19.91260 -18.42256 -17.85154 -17.41171 -17.21414 -16.93831 -16.79432 -16.59847 -16.36038 -15.96968 -15.81960 -15.46671 -15.40857 -15.11763 -14.95091 -14.68812 -14.27421 -14.08959 -13.77005 -13.58924 -13.54771 -13.44694 -13.18434 -13.03935 -12.84115 -12.78511 -12.43762 -12.41707 -12.31213 -12.13531 -12.11812 -11.75873 -11.54561 -11.51077 -11.49459 -11.21511 -10.82649 -10.40202 -10.37801 -10.17698 -10.03878 -9.49414 -8.48369 -5.97522 1.36779 1.40463 1.53383 1.53961 2.01082 2.02451 2.26473 2.66886 2.85501 2.94794 3.18453 3.42855 3.52954 3.54193 3.62728 3.73354 3.92008 3.95358 4.07293 4.18429 4.20171 4.23870 4.30507 4.42050 4.45157 4.50263 4.52112 4.59370 4.64594 4.70412 4.74879 4.80095 4.80500 4.82292 4.98752 5.03105 5.06602 5.07244 5.23158 5.29230 5.32718 5.36780 5.38982 5.83103 6.04569 6.31855 6.32231 6.46890 6.57200 7.10212 7.16629 7.53454 8.08197 8.69041 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.002197 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.711939 B =12742.546540 C =13868.496435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.086 3.914 3 H 0.080 0.920 4 C -0.127 4.127 5 C -0.102 4.102 6 H 0.130 0.870 7 C 0.515 3.485 8 O -0.585 6.585 9 N -0.711 5.711 10 C 0.135 3.865 11 C 0.004 3.996 12 N -0.634 5.634 13 C 0.068 3.932 14 C 0.439 3.561 15 O -0.619 6.619 16 N -0.574 5.574 17 C -0.333 4.333 18 H 0.080 0.920 19 C -0.015 4.015 20 N -0.921 5.921 21 Si 0.994 3.006 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.272 1.272 25 C -0.150 4.150 26 C -0.129 4.129 27 C -0.146 4.146 28 C 0.062 3.938 29 O -0.403 6.403 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.414 0.586 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.348 0.652 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.395 0.605 42 H 0.278 0.722 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.119 0.881 47 H 0.100 0.900 48 H 0.052 0.948 49 H 0.077 0.923 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.539 24.291 -4.087 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.098 0.902 4 C -0.165 4.165 5 C -0.123 4.123 6 H 0.148 0.852 7 C 0.302 3.698 8 O -0.465 6.465 9 N -0.363 5.363 10 C 0.009 3.991 11 C -0.088 4.088 12 N -0.264 5.264 13 C -0.065 4.065 14 C 0.227 3.773 15 O -0.506 6.506 16 N -0.211 5.211 17 C -0.462 4.462 18 H 0.098 0.902 19 C -0.215 4.215 20 N -0.562 5.562 21 Si 0.818 3.182 22 H -0.196 1.196 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.188 4.188 26 C -0.167 4.167 27 C -0.184 4.184 28 C -0.015 4.015 29 O -0.323 6.323 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.251 0.749 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.167 0.833 39 H 0.120 0.880 40 H 0.076 0.924 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.132 0.868 44 H 0.111 0.889 45 H 0.120 0.880 46 H 0.137 0.863 47 H 0.118 0.882 48 H 0.071 0.929 49 H 0.095 0.905 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.137 23.999 -3.810 27.162 hybrid contribution -0.210 -1.483 -0.104 1.501 sum -12.347 22.516 -3.913 25.976 Atomic orbital electron populations 1.21796 0.92503 1.02595 1.03424 1.22228 0.95768 0.95408 0.83694 0.90231 1.22021 0.93487 1.01694 0.99320 1.21417 0.97337 1.01327 0.92195 0.85181 1.21112 0.82048 0.79752 0.86870 1.90696 1.56800 1.51494 1.47474 1.45936 1.07001 1.55541 1.27817 1.21250 0.92315 0.95784 0.89791 1.21657 0.88704 0.95055 1.03381 1.59912 1.58171 1.01828 1.06528 1.21451 0.96521 0.88461 1.00023 1.20795 0.87046 0.83416 0.86066 1.90487 1.44495 1.79860 1.35728 1.41951 1.36942 1.06654 1.35579 1.19672 1.18580 0.89094 1.18904 0.90156 1.26085 0.99005 0.99264 0.97122 1.69681 1.37892 1.18922 1.29726 0.84908 0.77906 0.76999 0.78410 1.19557 1.19619 1.19629 1.23180 1.02555 1.02178 0.90911 1.23121 1.02770 0.90843 0.99956 1.22217 1.02774 0.99744 0.93662 1.22702 0.80030 1.00824 0.97895 1.87937 1.22278 1.78501 1.43560 0.89558 0.93084 0.91190 0.90144 0.93089 0.74871 0.90432 0.93356 0.83304 0.87986 0.92440 0.77127 0.91303 0.86825 0.88922 0.87986 0.86306 0.88185 0.92868 0.90521 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.57 71.99 0.69 -1.16 16 2 C 0.09 1.20 3.26 30.63 0.10 1.30 16 3 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.13 -2.15 4.02 30.68 0.12 -2.03 16 5 C -0.10 -1.47 2.61 -11.42 -0.03 -1.50 16 6 H 0.13 1.07 8.14 -2.39 -0.02 1.06 16 7 C 0.51 10.94 7.16 87.66 0.63 11.56 16 8 O -0.58 -17.94 15.94 -3.00 -0.05 -17.99 16 9 N -0.71 -12.52 5.30 -463.07 -2.46 -14.98 16 10 C 0.13 2.89 5.78 86.38 0.50 3.39 16 11 C 0.00 0.09 1.79 3.53 0.01 0.10 16 12 N -0.63 -18.67 6.12 -474.15 -2.90 -21.57 16 13 C 0.07 2.34 5.88 85.55 0.50 2.84 16 14 C 0.44 20.98 7.84 87.66 0.69 21.66 16 15 O -0.62 -34.05 15.93 -3.08 -0.05 -34.10 16 16 N -0.57 -29.86 5.29 -306.98 -1.62 -31.48 16 17 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 18 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 19 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 20 N -0.92 -50.45 13.05 21.66 0.28 -50.17 16 21 Si 0.99 43.26 29.55 68.60 2.03 45.28 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 C -0.15 -2.81 10.05 30.62 0.31 -2.51 16 26 C -0.13 -2.05 9.80 30.62 0.30 -1.75 16 27 C -0.15 -1.98 5.30 30.68 0.16 -1.82 16 28 C 0.06 0.74 6.84 72.01 0.49 1.24 16 29 O -0.40 -7.05 10.41 -148.98 -1.55 -8.60 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.05 1.17 8.02 -2.39 -0.02 1.15 16 35 H 0.41 5.18 7.81 -92.70 -0.72 4.45 16 36 H 0.08 1.68 7.83 -2.39 -0.02 1.66 16 37 H 0.05 1.28 6.58 -2.39 -0.02 1.27 16 38 H 0.35 10.42 8.77 -89.69 -0.79 9.64 16 39 H 0.10 3.26 8.06 -2.39 -0.02 3.24 16 40 H 0.06 1.86 6.85 -2.39 -0.02 1.85 16 41 H 0.40 19.72 7.90 -92.71 -0.73 18.98 16 42 H 0.28 14.23 8.31 -92.71 -0.77 13.45 16 43 H 0.11 1.73 8.03 -2.39 -0.02 1.71 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.10 0.96 7.70 -2.39 -0.02 0.94 16 48 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 50 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -74.93 408.69 -1.84 -76.77 By element: Atomic # 1 Polarization: 45.37 SS G_CDS: -1.27 Total: 44.09 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 5.75 Total: 12.74 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -6.70 Total: -118.20 kcal Atomic # 8 Polarization: -59.05 SS G_CDS: -1.65 Total: -60.69 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -74.93 -1.84 -76.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733256772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.005 kcal (2) G-P(sol) polarization free energy of solvation -74.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds