Wall clock time and date at job start Tue Mar 31 2020 23:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49342 * 2 1 4 4 C 1.53095 * 109.48207 * 239.97747 * 2 1 3 5 5 C 1.53174 * 109.16421 * 182.40485 * 4 2 1 6 6 H 1.08991 * 109.54481 * 297.11017 * 5 4 2 7 7 C 1.50702 * 109.61435 * 176.89000 * 5 4 2 8 8 O 1.21285 * 120.00123 * 0.40129 * 7 5 4 9 9 N 1.34776 * 120.00191 * 180.39906 * 7 5 4 10 10 C 1.46495 * 120.00603 * 179.97438 * 9 7 5 11 11 C 1.52994 * 109.47611 * 175.58288 * 10 9 7 12 12 N 1.46909 * 115.54843 * 279.61941 * 11 10 9 13 13 C 1.46908 * 110.99498 * 295.73230 * 12 11 10 14 14 C 1.50698 * 109.46546 * 185.27857 * 13 12 11 15 15 O 1.21296 * 120.00276 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00101 * 179.97438 * 14 13 12 17 17 C 1.37093 * 120.00324 * 180.02562 * 16 14 13 18 18 H 1.08005 * 120.00086 * 0.02562 * 17 16 14 19 19 C 1.38952 * 120.00163 * 180.02562 * 17 16 14 20 20 N 1.31410 * 119.99741 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00074 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47249 * 59.99766 * 21 19 17 23 23 H 1.48497 * 109.47027 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47256 * 299.99900 * 21 19 17 25 25 C 1.52998 * 117.50226 * 133.91085 * 11 10 9 26 26 C 1.52994 * 117.50011 * 65.28449 * 11 10 9 27 27 C 1.53181 * 109.03676 * 56.98172 * 5 4 2 28 28 C 1.53091 * 109.16128 * 303.01729 * 27 5 4 29 29 O 1.42905 * 109.41529 * 57.61071 * 28 27 5 30 30 H 1.08999 * 109.46866 * 299.96695 * 1 2 3 31 31 H 1.08999 * 109.47080 * 59.96614 * 1 2 3 32 32 H 1.08996 * 109.46902 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.52084 * 62.50023 * 4 2 1 34 34 H 1.09004 * 109.56972 * 302.34492 * 4 2 1 35 35 H 0.97004 * 119.99798 * 0.02562 * 9 7 5 36 36 H 1.09007 * 109.47400 * 295.58500 * 10 9 7 37 37 H 1.09000 * 109.47019 * 55.57721 * 10 9 7 38 38 H 1.00900 * 110.99584 * 59.68195 * 12 11 10 39 39 H 1.09000 * 109.47229 * 305.27503 * 13 12 11 40 40 H 1.08998 * 109.47071 * 65.28142 * 13 12 11 41 41 H 0.96996 * 119.99404 * 0.02562 * 16 14 13 42 42 H 0.97001 * 119.99529 * 180.02562 * 20 19 17 43 43 H 1.08998 * 117.49722 * 359.97438 * 25 11 10 44 44 H 1.09006 * 117.49652 * 145.01710 * 25 11 10 45 45 H 1.09006 * 117.50021 * 214.97694 * 26 11 10 46 46 H 1.08994 * 117.50174 * 0.02562 * 26 11 10 47 47 H 1.08997 * 109.52069 * 183.10931 * 27 5 4 48 48 H 1.08997 * 109.52025 * 62.92270 * 27 5 4 49 49 H 1.08998 * 109.47921 * 297.62505 * 28 27 5 50 50 H 1.09000 * 109.48146 * 177.59110 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7221 -1.2496 5 6 3.5711 -0.7707 -1.2123 6 1 3.9689 0.2437 -1.2409 7 6 4.0818 -1.5461 -2.3993 8 8 3.3003 -2.0092 -3.2029 9 7 5.4069 -1.7250 -2.5679 10 6 5.9034 -2.4792 -3.7215 11 6 7.4328 -2.4408 -3.7362 12 7 8.0306 -1.2153 -4.2832 13 6 7.7026 -1.0598 -5.7068 14 6 8.4360 0.1331 -6.2636 15 8 9.1609 0.7889 -5.5455 16 7 8.2873 0.4707 -7.5600 17 6 8.9548 1.5556 -8.0668 18 1 9.6003 2.1396 -7.4273 19 6 8.8010 1.9040 -9.4031 20 7 8.0161 1.1932 -10.1812 21 14 9.7111 3.3818 -10.0938 22 1 11.1742 3.1772 -9.9424 23 1 9.3800 3.5388 -11.5328 24 1 9.3032 4.6039 -9.3552 25 6 8.1703 -3.7583 -3.9833 26 6 8.1680 -3.1331 -2.5868 27 6 4.0177 -1.4600 0.0807 28 6 3.4308 -0.7093 1.2789 29 8 2.0066 -0.6743 1.1663 30 1 -0.3633 0.5133 0.8903 31 1 -0.3633 0.5144 -0.8897 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7148 -0.1841 -2.1399 34 1 1.6443 -1.7374 -1.2722 35 1 6.0320 -1.3549 -1.9250 36 1 5.5666 -3.5136 -3.6516 37 1 5.5199 -2.0336 -4.6393 38 1 7.7421 -0.4054 -3.7551 39 1 8.0030 -1.9565 -6.2488 40 1 6.6287 -0.9105 -5.8180 41 1 7.7079 -0.0540 -8.1343 42 1 7.9090 1.4361 -11.1142 43 1 7.5659 -4.6525 -4.1350 44 1 9.0993 -3.7160 -4.5521 45 1 9.0954 -2.6797 -2.2369 46 1 7.5621 -3.6164 -1.8204 47 1 5.1059 -1.4497 0.1418 48 1 3.6614 -2.4901 0.0861 49 1 3.8193 0.3089 1.2957 50 1 3.7101 -1.2204 2.2003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733256773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:26 Heat of formation + Delta-G solvation = -105.311886 kcal Electronic energy + Delta-G solvation = -29614.049635 eV Core-core repulsion = 25448.406277 eV Total energy + Delta-G solvation = -4165.643357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.68604 -39.34716 -38.53687 -37.72764 -34.43042 -34.04968 -33.90697 -33.07576 -32.80439 -31.20204 -28.41335 -27.55231 -26.56463 -24.72670 -24.11603 -23.08919 -22.50753 -21.12467 -20.27584 -19.63974 -19.21760 -17.89167 -17.58211 -16.75686 -16.43751 -16.40171 -15.95016 -15.66942 -15.26934 -15.08925 -14.93501 -14.51133 -14.48437 -14.07391 -14.04548 -13.93257 -13.42590 -13.37070 -12.97855 -12.77006 -12.62383 -12.50459 -12.27673 -12.21605 -11.73198 -11.60813 -11.56045 -11.52010 -11.46458 -11.15177 -11.03334 -10.83015 -10.65590 -10.45395 -10.35422 -10.22409 -10.05009 -9.64666 -9.51325 -9.26530 -8.58011 -8.15891 -7.97833 -6.42577 -3.83703 2.42972 2.83578 3.19043 3.24970 3.29025 3.39125 3.65839 3.88337 3.97118 4.19835 4.22405 4.28867 4.35884 4.44671 4.51251 4.76368 4.77356 4.83203 4.88590 5.00771 5.05790 5.06639 5.16394 5.22609 5.23513 5.30409 5.40109 5.41646 5.48240 5.53745 5.57778 5.57843 5.58873 5.70418 5.81936 5.82597 5.90217 5.94195 5.95892 6.11045 6.20460 6.24826 6.86198 7.11016 7.27345 7.51523 7.53805 8.01455 8.04348 8.59742 9.16371 9.52740 10.04024 10.75024 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012365 B = 0.002246 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.969475 B =12466.204726 C =13756.820689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.060 0.940 4 C -0.129 4.129 5 C -0.111 4.111 6 H 0.099 0.901 7 C 0.518 3.482 8 O -0.538 6.538 9 N -0.724 5.724 10 C 0.126 3.874 11 C 0.013 3.987 12 N -0.624 5.624 13 C 0.051 3.949 14 C 0.441 3.559 15 O -0.584 6.584 16 N -0.563 5.563 17 C -0.300 4.300 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C -0.148 4.148 26 C -0.155 4.155 27 C -0.147 4.147 28 C 0.064 3.936 29 O -0.380 6.380 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.401 0.599 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.350 0.650 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.053 0.947 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.665 -8.114 20.898 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.078 0.922 4 C -0.167 4.167 5 C -0.132 4.132 6 H 0.117 0.883 7 C 0.304 3.696 8 O -0.414 6.414 9 N -0.376 5.376 10 C 0.001 3.999 11 C -0.080 4.080 12 N -0.255 5.255 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.468 6.468 16 N -0.199 5.199 17 C -0.430 4.430 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.186 4.186 26 C -0.192 4.192 27 C -0.185 4.185 28 C -0.013 4.013 29 O -0.299 6.299 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.236 0.764 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.170 0.830 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.112 0.888 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.072 0.928 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.292 -8.334 20.561 24.456 hybrid contribution -0.252 0.957 -0.851 1.305 sum -10.544 -7.377 19.710 23.539 Atomic orbital electron populations 1.21755 0.92759 1.03128 1.02545 1.22150 0.95396 0.94951 0.84710 0.92245 1.22058 0.92825 1.03173 0.98653 1.21401 0.97950 1.00456 0.93405 0.88251 1.20539 0.82137 0.80161 0.86767 1.90718 1.55758 1.49671 1.45248 1.45997 1.07116 1.56575 1.27890 1.21428 0.92493 0.96742 0.89258 1.21686 0.89126 0.92411 1.04750 1.59969 1.60136 1.03183 1.02249 1.21672 0.97837 0.99301 0.89341 1.19760 0.86754 0.87477 0.83378 1.90520 1.42205 1.55304 1.58779 1.41853 1.42211 1.27640 1.08204 1.19644 1.24113 1.05243 0.93997 0.87985 1.25272 0.97401 0.99199 0.96061 1.69607 1.37661 1.39871 1.07079 0.85912 0.79686 0.81039 0.77546 1.19869 1.20953 1.19916 1.23059 1.02407 0.93878 0.99226 1.23053 1.02434 1.02397 0.91362 1.22205 1.01491 1.00985 0.93777 1.22545 0.81187 0.99662 0.97907 1.87944 1.20788 1.78038 1.43168 0.91784 0.90862 0.91690 0.90038 0.90112 0.76432 0.91099 0.90566 0.83001 0.89379 0.93710 0.77446 0.91778 0.88601 0.87564 0.87690 0.88805 0.90199 0.90374 0.92824 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.56 37.16 0.36 -0.66 16 2 C 0.09 0.69 3.26 -26.68 -0.09 0.60 16 3 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.13 -1.18 4.02 -26.59 -0.11 -1.29 16 5 C -0.11 -0.94 2.61 -91.59 -0.24 -1.18 16 6 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 7 C 0.52 5.96 7.16 -10.98 -0.08 5.88 16 8 O -0.54 -8.39 15.98 5.55 0.09 -8.31 16 9 N -0.72 -7.19 5.42 -60.30 -0.33 -7.51 16 10 C 0.13 1.44 5.67 -4.05 -0.02 1.42 16 11 C 0.01 0.15 1.72 -131.60 -0.23 -0.07 16 12 N -0.62 -9.52 6.15 -101.22 -0.62 -10.14 16 13 C 0.05 0.89 5.88 -4.97 -0.03 0.86 16 14 C 0.44 10.39 7.83 -10.98 -0.09 10.30 16 15 O -0.58 -15.73 15.89 5.54 0.09 -15.65 16 16 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 17 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 18 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 21 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.15 -1.53 10.10 -26.73 -0.27 -1.80 16 26 C -0.15 -1.44 10.06 -26.73 -0.27 -1.71 16 27 C -0.15 -0.97 5.29 -26.59 -0.14 -1.11 16 28 C 0.06 0.42 6.84 37.20 0.25 0.67 16 29 O -0.38 -3.42 10.41 -35.23 -0.37 -3.79 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 35 H 0.40 3.14 7.89 -40.82 -0.32 2.82 16 36 H 0.07 0.79 7.94 -51.93 -0.41 0.38 16 37 H 0.08 1.04 6.58 -51.93 -0.34 0.70 16 38 H 0.35 5.44 8.71 -39.29 -0.34 5.10 16 39 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 40 H 0.04 0.75 6.82 -51.93 -0.35 0.39 16 41 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 44 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.39 7.67 -51.93 -0.40 -0.01 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 409.18 15.07 6.17 6.17 Total: -1.00 -33.66 409.18 -8.85 -42.51 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -8.34 Total: 15.12 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.19 Total: 3.86 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.28 Total: -56.02 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.19 Total: -27.74 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.66 -8.85 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733256773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.797 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds