Wall clock time and date at job start Tue Mar 31 2020 23:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49342 * 2 1 4 4 C 1.53095 * 109.48207 * 239.97747 * 2 1 3 5 5 C 1.53174 * 109.16421 * 182.40485 * 4 2 1 6 6 H 1.08991 * 109.54481 * 297.11017 * 5 4 2 7 7 C 1.50702 * 109.61435 * 176.89000 * 5 4 2 8 8 O 1.21285 * 120.00123 * 0.40129 * 7 5 4 9 9 N 1.34776 * 120.00191 * 180.39906 * 7 5 4 10 10 C 1.46495 * 120.00603 * 179.97438 * 9 7 5 11 11 C 1.52994 * 109.47611 * 175.58288 * 10 9 7 12 12 N 1.46909 * 115.54843 * 279.61941 * 11 10 9 13 13 C 1.46908 * 110.99498 * 295.73230 * 12 11 10 14 14 C 1.50698 * 109.46546 * 185.27857 * 13 12 11 15 15 O 1.21296 * 120.00276 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00101 * 179.97438 * 14 13 12 17 17 C 1.37093 * 120.00324 * 180.02562 * 16 14 13 18 18 H 1.08005 * 120.00086 * 0.02562 * 17 16 14 19 19 C 1.38952 * 120.00163 * 180.02562 * 17 16 14 20 20 N 1.31410 * 119.99741 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00074 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47249 * 59.99766 * 21 19 17 23 23 H 1.48497 * 109.47027 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47256 * 299.99900 * 21 19 17 25 25 C 1.52998 * 117.50226 * 133.91085 * 11 10 9 26 26 C 1.52994 * 117.50011 * 65.28449 * 11 10 9 27 27 C 1.53181 * 109.03676 * 56.98172 * 5 4 2 28 28 C 1.53091 * 109.16128 * 303.01729 * 27 5 4 29 29 O 1.42905 * 109.41529 * 57.61071 * 28 27 5 30 30 H 1.08999 * 109.46866 * 299.96695 * 1 2 3 31 31 H 1.08999 * 109.47080 * 59.96614 * 1 2 3 32 32 H 1.08996 * 109.46902 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.52084 * 62.50023 * 4 2 1 34 34 H 1.09004 * 109.56972 * 302.34492 * 4 2 1 35 35 H 0.97004 * 119.99798 * 0.02562 * 9 7 5 36 36 H 1.09007 * 109.47400 * 295.58500 * 10 9 7 37 37 H 1.09000 * 109.47019 * 55.57721 * 10 9 7 38 38 H 1.00900 * 110.99584 * 59.68195 * 12 11 10 39 39 H 1.09000 * 109.47229 * 305.27503 * 13 12 11 40 40 H 1.08998 * 109.47071 * 65.28142 * 13 12 11 41 41 H 0.96996 * 119.99404 * 0.02562 * 16 14 13 42 42 H 0.97001 * 119.99529 * 180.02562 * 20 19 17 43 43 H 1.08998 * 117.49722 * 359.97438 * 25 11 10 44 44 H 1.09006 * 117.49652 * 145.01710 * 25 11 10 45 45 H 1.09006 * 117.50021 * 214.97694 * 26 11 10 46 46 H 1.08994 * 117.50174 * 0.02562 * 26 11 10 47 47 H 1.08997 * 109.52069 * 183.10931 * 27 5 4 48 48 H 1.08997 * 109.52025 * 62.92270 * 27 5 4 49 49 H 1.08998 * 109.47921 * 297.62505 * 28 27 5 50 50 H 1.09000 * 109.48146 * 177.59110 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7221 -1.2496 5 6 3.5711 -0.7707 -1.2123 6 1 3.9689 0.2437 -1.2409 7 6 4.0818 -1.5461 -2.3993 8 8 3.3003 -2.0092 -3.2029 9 7 5.4069 -1.7250 -2.5679 10 6 5.9034 -2.4792 -3.7215 11 6 7.4328 -2.4408 -3.7362 12 7 8.0306 -1.2153 -4.2832 13 6 7.7026 -1.0598 -5.7068 14 6 8.4360 0.1331 -6.2636 15 8 9.1609 0.7889 -5.5455 16 7 8.2873 0.4707 -7.5600 17 6 8.9548 1.5556 -8.0668 18 1 9.6003 2.1396 -7.4273 19 6 8.8010 1.9040 -9.4031 20 7 8.0161 1.1932 -10.1812 21 14 9.7111 3.3818 -10.0938 22 1 11.1742 3.1772 -9.9424 23 1 9.3800 3.5388 -11.5328 24 1 9.3032 4.6039 -9.3552 25 6 8.1703 -3.7583 -3.9833 26 6 8.1680 -3.1331 -2.5868 27 6 4.0177 -1.4600 0.0807 28 6 3.4308 -0.7093 1.2789 29 8 2.0066 -0.6743 1.1663 30 1 -0.3633 0.5133 0.8903 31 1 -0.3633 0.5144 -0.8897 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7148 -0.1841 -2.1399 34 1 1.6443 -1.7374 -1.2722 35 1 6.0320 -1.3549 -1.9250 36 1 5.5666 -3.5136 -3.6516 37 1 5.5199 -2.0336 -4.6393 38 1 7.7421 -0.4054 -3.7551 39 1 8.0030 -1.9565 -6.2488 40 1 6.6287 -0.9105 -5.8180 41 1 7.7079 -0.0540 -8.1343 42 1 7.9090 1.4361 -11.1142 43 1 7.5659 -4.6525 -4.1350 44 1 9.0993 -3.7160 -4.5521 45 1 9.0954 -2.6797 -2.2369 46 1 7.5621 -3.6164 -1.8204 47 1 5.1059 -1.4497 0.1418 48 1 3.6614 -2.4901 0.0861 49 1 3.8193 0.3089 1.2957 50 1 3.7101 -1.2204 2.2003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733256773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:25 Heat of formation + Delta-G solvation = -131.404253 kcal Electronic energy + Delta-G solvation = -29615.181085 eV Core-core repulsion = 25448.406277 eV Total energy + Delta-G solvation = -4166.774807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.50117 -40.41085 -39.81070 -39.01342 -36.04180 -35.33546 -34.63483 -34.12701 -33.66048 -33.23631 -29.07447 -28.53982 -28.06443 -25.94345 -25.41483 -23.71069 -23.31720 -21.83475 -21.22172 -21.00242 -20.52579 -19.91795 -18.48397 -17.80817 -17.41990 -17.18007 -16.96611 -16.81116 -16.56555 -16.20481 -16.15469 -15.84052 -15.56560 -15.20971 -15.13844 -14.97797 -14.71489 -14.28873 -14.09754 -13.78803 -13.57864 -13.53085 -13.42762 -13.19547 -13.05694 -12.83983 -12.79963 -12.45558 -12.42039 -12.30155 -12.14148 -12.11828 -11.76193 -11.54248 -11.51005 -11.48865 -11.20659 -10.83104 -10.40387 -10.38773 -10.18231 -10.04625 -9.49918 -8.48553 -5.97950 1.38367 1.40271 1.51573 1.53614 2.00115 2.01499 2.26453 2.68310 2.84782 2.94312 3.18168 3.42096 3.52052 3.55635 3.61674 3.73717 3.92428 3.94416 4.08153 4.17852 4.19580 4.23141 4.29960 4.43764 4.45507 4.50942 4.51964 4.59655 4.65577 4.70785 4.75641 4.80175 4.81546 4.81818 4.97696 5.02834 5.07337 5.07807 5.22200 5.28310 5.32208 5.36844 5.38339 5.82680 6.03962 6.30223 6.31486 6.45999 6.56573 7.09519 7.15693 7.52633 8.07255 8.68676 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012365 B = 0.002246 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.969475 B =12466.204726 C =13756.820689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.071 0.929 4 C -0.126 4.126 5 C -0.107 4.107 6 H 0.116 0.884 7 C 0.515 3.485 8 O -0.585 6.585 9 N -0.711 5.711 10 C 0.134 3.866 11 C 0.003 3.997 12 N -0.633 5.633 13 C 0.068 3.932 14 C 0.439 3.561 15 O -0.620 6.620 16 N -0.574 5.574 17 C -0.334 4.334 18 H 0.081 0.919 19 C -0.014 4.014 20 N -0.921 5.921 21 Si 0.994 3.006 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.271 1.271 25 C -0.149 4.149 26 C -0.130 4.130 27 C -0.139 4.139 28 C 0.059 3.941 29 O -0.399 6.399 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.414 0.586 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.347 0.653 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.395 0.605 42 H 0.278 0.722 43 H 0.115 0.885 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.120 0.880 47 H 0.104 0.896 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.220 -8.270 22.295 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.089 0.911 4 C -0.165 4.165 5 C -0.128 4.128 6 H 0.134 0.866 7 C 0.302 3.698 8 O -0.465 6.465 9 N -0.363 5.363 10 C 0.008 3.992 11 C -0.090 4.090 12 N -0.264 5.264 13 C -0.064 4.064 14 C 0.226 3.774 15 O -0.506 6.506 16 N -0.211 5.211 17 C -0.464 4.464 18 H 0.099 0.901 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.818 3.182 22 H -0.196 1.196 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.187 4.187 26 C -0.167 4.167 27 C -0.177 4.177 28 C -0.017 4.017 29 O -0.319 6.319 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.251 0.749 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.166 0.834 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.133 0.867 44 H 0.111 0.889 45 H 0.120 0.880 46 H 0.138 0.862 47 H 0.122 0.878 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.832 -8.509 21.984 25.542 hybrid contribution -0.376 0.953 -1.238 1.608 sum -10.208 -7.556 20.746 24.325 Atomic orbital electron populations 1.21778 0.92362 1.02842 1.03255 1.22173 0.95854 0.95141 0.83866 0.91100 1.22004 0.93530 1.01960 0.98982 1.21437 0.97342 1.00987 0.93048 0.86600 1.21085 0.82116 0.79620 0.86946 1.90698 1.56947 1.51752 1.47074 1.45907 1.06955 1.55900 1.27579 1.21250 0.92268 0.96941 0.88701 1.21657 0.89047 0.91309 1.06966 1.59943 1.61014 1.04559 1.00852 1.21446 0.97347 0.96665 0.90950 1.20781 0.85871 0.88243 0.82464 1.90485 1.43737 1.56907 1.59475 1.41946 1.42496 1.27509 1.09115 1.19641 1.25402 1.06656 0.94678 0.90131 1.26088 0.97850 1.01690 0.95784 1.69677 1.38138 1.40948 1.07459 0.84968 0.78409 0.77560 0.77287 1.19563 1.19543 1.19582 1.23154 1.01825 0.93780 0.99940 1.23130 1.01937 1.00511 0.91163 1.22191 1.02918 1.00002 0.92608 1.22751 0.79974 1.00665 0.98352 1.87927 1.22385 1.78276 1.43269 0.91127 0.90092 0.92492 0.91149 0.92174 0.74899 0.90417 0.93153 0.83384 0.87996 0.92667 0.77140 0.91272 0.86701 0.88894 0.88017 0.86168 0.87792 0.91576 0.91456 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.56 71.98 0.69 -1.28 16 2 C 0.09 1.32 3.26 30.63 0.10 1.42 16 3 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.13 -2.32 4.02 30.68 0.12 -2.20 16 5 C -0.11 -1.70 2.61 -11.42 -0.03 -1.73 16 6 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 7 C 0.51 11.51 7.16 87.66 0.63 12.14 16 8 O -0.58 -18.59 15.98 -3.05 -0.05 -18.64 16 9 N -0.71 -13.01 5.42 -463.07 -2.51 -15.52 16 10 C 0.13 2.89 5.67 86.38 0.49 3.38 16 11 C 0.00 0.06 1.72 3.52 0.01 0.06 16 12 N -0.63 -18.73 6.15 -474.14 -2.92 -21.64 16 13 C 0.07 2.37 5.88 85.55 0.50 2.88 16 14 C 0.44 21.00 7.83 87.66 0.69 21.69 16 15 O -0.62 -34.04 15.89 -3.08 -0.05 -34.09 16 16 N -0.57 -29.89 5.29 -306.97 -1.62 -31.51 16 17 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 18 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 19 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 20 N -0.92 -50.44 13.05 21.66 0.28 -50.16 16 21 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 C -0.15 -2.74 10.10 30.59 0.31 -2.43 16 26 C -0.13 -2.02 10.06 30.59 0.31 -1.71 16 27 C -0.14 -1.55 5.29 30.69 0.16 -1.39 16 28 C 0.06 0.62 6.84 72.01 0.49 1.12 16 29 O -0.40 -6.63 10.41 -148.98 -1.55 -8.18 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.06 1.33 8.03 -2.38 -0.02 1.32 16 35 H 0.41 5.42 7.89 -92.71 -0.73 4.69 16 36 H 0.08 1.60 7.94 -2.38 -0.02 1.58 16 37 H 0.05 1.37 6.58 -2.39 -0.02 1.35 16 38 H 0.35 10.53 8.71 -89.69 -0.78 9.75 16 39 H 0.10 3.28 8.13 -2.39 -0.02 3.26 16 40 H 0.06 1.83 6.82 -2.39 -0.02 1.81 16 41 H 0.40 19.77 7.90 -92.71 -0.73 19.04 16 42 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 43 H 0.11 1.68 8.08 -2.39 -0.02 1.67 16 44 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 45 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 46 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.10 0.65 7.67 -2.39 -0.02 0.64 16 48 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -74.40 409.18 -1.92 -76.31 By element: Atomic # 1 Polarization: 46.22 SS G_CDS: -1.28 Total: 44.95 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 5.75 Total: 13.34 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -6.77 Total: -118.83 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -1.65 Total: -60.90 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -74.40 -1.92 -76.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733256773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.093 kcal (2) G-P(sol) polarization free energy of solvation -74.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds