Wall clock time and date at job start Tue Mar 31 2020 23:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.98868 * 2 1 4 4 O 1.43743 * 109.88124 * 121.09100 * 2 1 3 5 5 C 1.44372 * 106.97656 * 145.93632 * 4 2 1 6 6 C 1.54994 * 103.49100 * 319.93902 * 5 4 2 7 7 C 1.54104 * 109.87570 * 238.92429 * 2 1 3 8 8 H 1.08999 * 110.48848 * 357.34906 * 7 2 1 9 9 C 1.50699 * 110.48919 * 119.86960 * 7 2 1 10 10 O 1.21280 * 120.00071 * 359.97438 * 9 7 2 11 11 N 1.34767 * 119.99940 * 179.97438 * 9 7 2 12 12 C 1.46502 * 120.00133 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47330 * 174.96016 * 12 11 9 14 14 N 1.46907 * 112.85297 * 311.62720 * 13 12 11 15 15 C 1.46896 * 111.00036 * 294.63264 * 14 13 12 16 16 C 1.50693 * 109.47197 * 176.38443 * 15 14 13 17 17 O 1.21288 * 120.00190 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00181 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00408 * 180.02562 * 18 16 15 20 20 H 1.08007 * 119.99662 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00278 * 179.72467 * 19 18 16 22 22 N 1.31407 * 119.99747 * 0.26766 * 21 19 18 23 23 Si 1.86800 * 120.00009 * 180.27615 * 21 19 18 24 24 H 1.48500 * 109.47363 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47259 * 119.99694 * 23 21 19 26 26 H 1.48505 * 109.46907 * 239.99710 * 23 21 19 27 27 C 1.53782 * 113.61512 * 82.82387 * 13 12 11 28 28 C 1.53956 * 87.01887 * 89.22680 * 27 13 12 29 29 C 1.53779 * 113.61594 * 180.43118 * 13 12 11 30 30 H 1.09001 * 109.46685 * 181.08230 * 1 2 3 31 31 H 1.09003 * 109.47142 * 301.07693 * 1 2 3 32 32 H 1.08997 * 109.47210 * 61.07940 * 1 2 3 33 33 H 1.09005 * 110.61924 * 78.44247 * 5 4 2 34 34 H 1.09001 * 110.61936 * 201.27776 * 5 4 2 35 35 H 1.08996 * 110.90510 * 278.82350 * 6 5 4 36 36 H 1.09008 * 110.90674 * 155.21844 * 6 5 4 37 37 H 0.97001 * 120.00370 * 359.97438 * 11 9 7 38 38 H 1.09003 * 109.46834 * 54.96546 * 12 11 9 39 39 H 1.09002 * 109.47292 * 294.96327 * 12 11 9 40 40 H 1.00897 * 110.99927 * 170.68063 * 14 13 12 41 41 H 1.09008 * 109.47135 * 56.38344 * 15 14 13 42 42 H 1.09001 * 109.47251 * 296.39040 * 15 14 13 43 43 H 0.97003 * 119.99833 * 359.97438 * 18 16 15 44 44 H 0.97005 * 119.99562 * 180.02562 * 22 21 19 45 45 H 1.08998 * 113.61660 * 203.74705 * 27 13 12 46 46 H 1.09003 * 113.61167 * 334.65113 * 27 13 12 47 47 H 1.08993 * 113.53955 * 270.81498 * 28 27 13 48 48 H 1.09004 * 113.74041 * 139.94350 * 28 27 13 49 49 H 1.08999 * 113.61747 * 25.34972 * 29 13 12 50 50 H 1.09001 * 113.62002 * 156.25579 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0189 -0.6980 1.1576 5 6 3.2379 -1.3642 0.7645 6 6 2.9195 -1.8914 -0.6578 7 6 2.0540 -0.7481 -1.2413 8 1 1.2245 -1.1527 -1.8212 9 6 2.8945 0.1677 -2.0933 10 8 3.0700 1.3191 -1.7551 11 7 3.4511 -0.2928 -3.2310 12 6 4.2677 0.5976 -4.0596 13 6 4.8782 -0.1982 -5.2149 14 7 5.5094 -1.4497 -4.7748 15 6 6.6725 -1.1801 -3.9191 16 6 7.2389 -2.4829 -3.4164 17 8 6.7246 -3.5327 -3.7395 18 7 8.3171 -2.4815 -2.6076 19 6 8.8328 -3.6667 -2.1506 20 1 8.3747 -4.6016 -2.4383 21 6 9.9478 -3.6656 -1.3214 22 7 10.5048 -2.5282 -0.9711 23 14 10.6550 -5.2809 -0.7050 24 1 9.8508 -6.4093 -1.2391 25 1 12.0608 -5.4133 -1.1647 26 1 10.6152 -5.3043 0.7793 27 6 3.9279 -0.3750 -6.4110 28 6 4.4960 0.9485 -6.9549 29 6 5.7667 0.6465 -6.1431 30 1 -0.3633 -1.0275 0.0194 31 1 -0.3633 0.5305 0.8802 32 1 -0.3633 0.4970 -0.8995 33 1 4.0686 -0.6589 0.7355 34 1 3.4600 -2.1891 1.4415 35 1 2.3540 -2.8219 -0.6101 36 1 3.8332 -2.0222 -1.2377 37 1 3.3110 -1.2138 -3.5013 38 1 5.0651 1.0279 -3.4536 39 1 3.6431 1.3967 -4.4589 40 1 5.7666 -2.0222 -5.5649 41 1 6.3660 -0.5662 -3.0721 42 1 7.4324 -0.6516 -4.4948 43 1 8.7287 -1.6420 -2.3495 44 1 11.2834 -2.5274 -0.3925 45 1 4.1637 -1.2393 -7.0320 46 1 2.8730 -0.3207 -6.1423 47 1 3.9555 1.8293 -6.6084 48 1 4.6561 0.9472 -8.0332 49 1 6.1941 1.5244 -5.6586 50 1 6.5061 0.0621 -6.6908 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733726671.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:15 Heat of formation + Delta-G solvation = -101.832946 kcal Electronic energy + Delta-G solvation = -30906.656199 eV Core-core repulsion = 26741.163700 eV Total energy + Delta-G solvation = -4165.492499 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.74108 -39.93579 -38.24914 -38.00035 -34.45415 -34.12673 -33.21753 -32.55873 -31.50292 -31.23451 -28.07641 -26.94384 -26.09541 -25.74786 -24.28364 -22.63409 -22.32807 -21.64968 -20.04790 -19.27242 -18.99418 -17.91771 -17.36970 -16.80333 -16.16212 -16.08432 -15.71918 -15.40102 -15.35336 -14.85785 -14.59287 -14.55125 -14.47688 -14.07407 -13.70459 -13.46108 -13.32768 -13.14961 -12.78667 -12.65106 -12.49520 -12.43091 -12.33836 -12.03988 -11.75688 -11.59201 -11.40517 -11.35511 -11.16373 -11.11758 -11.02416 -10.94841 -10.78794 -10.43117 -10.37298 -10.25153 -9.93061 -9.55473 -9.54507 -9.03596 -8.54203 -8.11895 -7.99863 -6.45063 -3.86190 2.58755 3.08295 3.13575 3.24675 3.31174 3.79197 3.86259 4.00317 4.22830 4.34939 4.40569 4.45850 4.48077 4.62130 4.64746 4.74034 4.95234 5.05384 5.12896 5.20959 5.23834 5.27068 5.30333 5.42281 5.47749 5.51233 5.53982 5.57760 5.62400 5.71955 5.74742 5.75737 5.85102 5.87744 5.89987 5.91179 5.95285 5.98434 6.06942 6.12050 6.22674 6.43884 6.85890 7.10151 7.51708 7.51898 7.55875 8.02360 8.20964 8.56930 9.14258 9.50458 10.01235 10.72533 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007905 B = 0.003865 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3541.304714 B = 7242.662972 C =10032.220005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.080 3.920 3 H 0.093 0.907 4 O -0.375 6.375 5 C 0.048 3.952 6 C -0.145 4.145 7 C -0.142 4.142 8 H 0.110 0.890 9 C 0.520 3.480 10 O -0.545 6.545 11 N -0.708 5.708 12 C 0.151 3.849 13 C 0.080 3.920 14 N -0.651 5.651 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.900 5.900 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.127 4.127 28 C -0.140 4.140 29 C -0.167 4.167 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.413 0.587 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.354 0.646 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.725 7.383 -6.436 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 H 0.110 0.890 4 O -0.294 6.294 5 C -0.029 4.029 6 C -0.183 4.183 7 C -0.164 4.164 8 H 0.128 0.872 9 C 0.306 3.694 10 O -0.423 6.423 11 N -0.360 5.360 12 C 0.027 3.973 13 C -0.012 4.012 14 N -0.283 5.283 15 C -0.081 4.081 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.199 5.199 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.541 5.541 23 Si 0.755 3.245 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.165 4.165 28 C -0.178 4.178 29 C -0.207 4.207 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.249 0.751 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.174 0.826 41 H 0.101 0.899 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.292 7.411 -5.554 18.740 hybrid contribution 1.592 -0.374 -0.560 1.729 sum -14.700 7.038 -6.114 17.407 Atomic orbital electron populations 1.21912 0.93620 1.02582 1.02441 1.22763 0.94858 0.97158 0.82999 0.88977 1.88854 1.39790 1.67831 1.32922 1.23559 0.87703 0.96606 0.95021 1.23166 1.00737 0.97352 0.97054 1.22718 0.99253 0.96643 0.97762 0.87192 1.20319 0.79915 0.88108 0.81046 1.90672 1.61452 1.18836 1.71380 1.45746 1.51042 1.16047 1.23173 1.21022 0.94270 0.91532 0.90482 1.22555 0.95886 0.90395 0.92402 1.59859 1.29766 1.14405 1.24287 1.21631 0.91754 0.97182 0.97556 1.19778 0.83392 0.89977 0.84244 1.90519 1.61868 1.32793 1.61616 1.41879 1.25873 1.09602 1.42565 1.19730 1.10066 0.86874 1.26250 0.87889 1.25261 0.96804 0.98582 0.97224 1.69620 1.22760 1.25427 1.36298 0.85822 0.78672 0.81570 0.78418 1.19215 1.20761 1.20704 1.23116 0.99184 0.98130 0.96103 1.22797 0.97217 0.97792 0.99972 1.23631 0.97253 1.01117 0.98698 0.91974 0.91709 0.91402 0.91855 0.88445 0.89353 0.88826 0.75092 0.91130 0.91112 0.82578 0.89861 0.93711 0.77533 0.91882 0.89444 0.90945 0.90049 0.91216 0.91062 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.36 37.16 0.35 -1.08 16 2 C 0.08 0.99 3.67 -26.15 -0.10 0.89 16 3 H 0.09 1.32 6.43 -51.93 -0.33 0.98 16 4 O -0.37 -5.23 11.19 -35.23 -0.39 -5.63 16 5 C 0.05 0.62 7.72 38.21 0.29 0.91 16 6 C -0.15 -1.72 6.70 -24.72 -0.17 -1.88 16 7 C -0.14 -1.61 3.07 -90.24 -0.28 -1.88 16 8 H 0.11 0.98 7.70 -51.93 -0.40 0.58 16 9 C 0.52 6.90 7.05 -10.99 -0.08 6.82 16 10 O -0.55 -8.98 15.25 5.56 0.08 -8.89 16 11 N -0.71 -8.38 5.23 -60.30 -0.32 -8.70 16 12 C 0.15 1.75 4.49 -4.04 -0.02 1.73 16 13 C 0.08 0.85 0.77 -130.79 -0.10 0.75 16 14 N -0.65 -8.94 5.36 -100.40 -0.54 -9.48 16 15 C 0.05 0.84 5.80 -4.98 -0.03 0.81 16 16 C 0.44 9.83 7.83 -10.99 -0.09 9.75 16 17 O -0.58 -14.87 15.86 5.55 0.09 -14.78 16 18 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 19 C -0.30 -8.15 9.68 -14.94 -0.14 -8.30 16 20 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 23 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 C -0.13 -1.12 7.36 -25.83 -0.19 -1.31 16 28 C -0.14 -1.13 7.74 -25.83 -0.20 -1.33 16 29 C -0.17 -1.61 6.61 -25.92 -0.17 -1.78 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 1.25 7.74 -51.92 -0.40 0.85 16 37 H 0.41 4.70 8.11 -40.82 -0.33 4.37 16 38 H 0.07 0.93 7.33 -51.93 -0.38 0.55 16 39 H 0.07 0.76 7.35 -51.93 -0.38 0.38 16 40 H 0.35 5.05 8.38 -39.29 -0.33 4.72 16 41 H 0.08 1.36 6.85 -51.92 -0.36 1.00 16 42 H 0.04 0.68 7.62 -51.93 -0.40 0.29 16 43 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 44 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.09 0.77 8.01 -51.93 -0.42 0.35 16 46 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 47 H 0.08 0.62 7.66 -51.93 -0.40 0.22 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 50 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 403.31 15.07 6.08 6.08 Total: -1.00 -31.47 403.31 -8.54 -40.01 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -8.18 Total: 18.44 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -1.01 Total: 4.63 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.19 Total: -55.57 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.22 Total: -29.30 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.47 -8.54 -40.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733726671.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.822 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds