Wall clock time and date at job start Tue Mar 31 2020 23:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.98868 * 2 1 4 4 O 1.43743 * 109.88124 * 121.09100 * 2 1 3 5 5 C 1.44372 * 106.97656 * 145.93632 * 4 2 1 6 6 C 1.54994 * 103.49100 * 319.93902 * 5 4 2 7 7 C 1.54104 * 109.87570 * 238.92429 * 2 1 3 8 8 H 1.08999 * 110.48848 * 357.34906 * 7 2 1 9 9 C 1.50699 * 110.48919 * 119.86960 * 7 2 1 10 10 O 1.21280 * 120.00071 * 359.97438 * 9 7 2 11 11 N 1.34767 * 119.99940 * 179.97438 * 9 7 2 12 12 C 1.46502 * 120.00133 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47330 * 174.96016 * 12 11 9 14 14 N 1.46907 * 112.85297 * 311.62720 * 13 12 11 15 15 C 1.46896 * 111.00036 * 294.63264 * 14 13 12 16 16 C 1.50693 * 109.47197 * 176.38443 * 15 14 13 17 17 O 1.21288 * 120.00190 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00181 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00408 * 180.02562 * 18 16 15 20 20 H 1.08007 * 119.99662 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00278 * 179.72467 * 19 18 16 22 22 N 1.31407 * 119.99747 * 0.26766 * 21 19 18 23 23 Si 1.86800 * 120.00009 * 180.27615 * 21 19 18 24 24 H 1.48500 * 109.47363 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47259 * 119.99694 * 23 21 19 26 26 H 1.48505 * 109.46907 * 239.99710 * 23 21 19 27 27 C 1.53782 * 113.61512 * 82.82387 * 13 12 11 28 28 C 1.53956 * 87.01887 * 89.22680 * 27 13 12 29 29 C 1.53779 * 113.61594 * 180.43118 * 13 12 11 30 30 H 1.09001 * 109.46685 * 181.08230 * 1 2 3 31 31 H 1.09003 * 109.47142 * 301.07693 * 1 2 3 32 32 H 1.08997 * 109.47210 * 61.07940 * 1 2 3 33 33 H 1.09005 * 110.61924 * 78.44247 * 5 4 2 34 34 H 1.09001 * 110.61936 * 201.27776 * 5 4 2 35 35 H 1.08996 * 110.90510 * 278.82350 * 6 5 4 36 36 H 1.09008 * 110.90674 * 155.21844 * 6 5 4 37 37 H 0.97001 * 120.00370 * 359.97438 * 11 9 7 38 38 H 1.09003 * 109.46834 * 54.96546 * 12 11 9 39 39 H 1.09002 * 109.47292 * 294.96327 * 12 11 9 40 40 H 1.00897 * 110.99927 * 170.68063 * 14 13 12 41 41 H 1.09008 * 109.47135 * 56.38344 * 15 14 13 42 42 H 1.09001 * 109.47251 * 296.39040 * 15 14 13 43 43 H 0.97003 * 119.99833 * 359.97438 * 18 16 15 44 44 H 0.97005 * 119.99562 * 180.02562 * 22 21 19 45 45 H 1.08998 * 113.61660 * 203.74705 * 27 13 12 46 46 H 1.09003 * 113.61167 * 334.65113 * 27 13 12 47 47 H 1.08993 * 113.53955 * 270.81498 * 28 27 13 48 48 H 1.09004 * 113.74041 * 139.94350 * 28 27 13 49 49 H 1.08999 * 113.61747 * 25.34972 * 29 13 12 50 50 H 1.09001 * 113.62002 * 156.25579 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0189 -0.6980 1.1576 5 6 3.2379 -1.3642 0.7645 6 6 2.9195 -1.8914 -0.6578 7 6 2.0540 -0.7481 -1.2413 8 1 1.2245 -1.1527 -1.8212 9 6 2.8945 0.1677 -2.0933 10 8 3.0700 1.3191 -1.7551 11 7 3.4511 -0.2928 -3.2310 12 6 4.2677 0.5976 -4.0596 13 6 4.8782 -0.1982 -5.2149 14 7 5.5094 -1.4497 -4.7748 15 6 6.6725 -1.1801 -3.9191 16 6 7.2389 -2.4829 -3.4164 17 8 6.7246 -3.5327 -3.7395 18 7 8.3171 -2.4815 -2.6076 19 6 8.8328 -3.6667 -2.1506 20 1 8.3747 -4.6016 -2.4383 21 6 9.9478 -3.6656 -1.3214 22 7 10.5048 -2.5282 -0.9711 23 14 10.6550 -5.2809 -0.7050 24 1 9.8508 -6.4093 -1.2391 25 1 12.0608 -5.4133 -1.1647 26 1 10.6152 -5.3043 0.7793 27 6 3.9279 -0.3750 -6.4110 28 6 4.4960 0.9485 -6.9549 29 6 5.7667 0.6465 -6.1431 30 1 -0.3633 -1.0275 0.0194 31 1 -0.3633 0.5305 0.8802 32 1 -0.3633 0.4970 -0.8995 33 1 4.0686 -0.6589 0.7355 34 1 3.4600 -2.1891 1.4415 35 1 2.3540 -2.8219 -0.6101 36 1 3.8332 -2.0222 -1.2377 37 1 3.3110 -1.2138 -3.5013 38 1 5.0651 1.0279 -3.4536 39 1 3.6431 1.3967 -4.4589 40 1 5.7666 -2.0222 -5.5649 41 1 6.3660 -0.5662 -3.0721 42 1 7.4324 -0.6516 -4.4948 43 1 8.7287 -1.6420 -2.3495 44 1 11.2834 -2.5274 -0.3925 45 1 4.1637 -1.2393 -7.0320 46 1 2.8730 -0.3207 -6.1423 47 1 3.9555 1.8293 -6.6084 48 1 4.6561 0.9472 -8.0332 49 1 6.1941 1.5244 -5.6586 50 1 6.5061 0.0621 -6.6908 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733726671.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:14 Heat of formation + Delta-G solvation = -125.667414 kcal Electronic energy + Delta-G solvation = -30907.689739 eV Core-core repulsion = 26741.163700 eV Total energy + Delta-G solvation = -4166.526039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74700 -40.91770 -39.84522 -39.22764 -36.03096 -35.45447 -34.52697 -33.55632 -33.22063 -32.41326 -29.14144 -28.32176 -26.98659 -26.73273 -25.89169 -23.62633 -23.28861 -22.60063 -21.07820 -21.01687 -19.91859 -19.87249 -18.41454 -17.99748 -17.33723 -17.11220 -16.91163 -16.69353 -16.38987 -16.34499 -15.92697 -15.85601 -15.64695 -15.49243 -15.00684 -14.69795 -14.31437 -14.23646 -14.04781 -13.72165 -13.53659 -13.51547 -13.25706 -13.20859 -13.20437 -12.93708 -12.71450 -12.43187 -12.40172 -12.35085 -12.12966 -12.06610 -11.95317 -11.87435 -11.54031 -11.50175 -11.22674 -10.98799 -10.61096 -10.33074 -10.06529 -10.00932 -9.30206 -8.46476 -5.95035 1.36177 1.41788 1.53611 1.55522 2.05539 2.10508 2.28645 2.81112 2.88875 3.20967 3.43031 3.45026 3.53650 3.62482 3.68461 3.73009 3.80524 3.92484 4.01664 4.20660 4.23819 4.27316 4.41714 4.42294 4.48458 4.50175 4.59019 4.62051 4.66713 4.71054 4.75622 4.82356 4.86463 4.94389 4.96204 5.07615 5.09902 5.10640 5.16572 5.25576 5.37973 5.41592 5.47861 5.85622 5.88546 6.08442 6.39812 6.54409 6.59403 7.12988 7.19072 7.56643 8.10855 8.71124 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007905 B = 0.003865 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3541.304714 B = 7242.662972 C =10032.220005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 H 0.067 0.933 4 O -0.388 6.388 5 C 0.042 3.958 6 C -0.138 4.138 7 C -0.134 4.134 8 H 0.142 0.858 9 C 0.517 3.483 10 O -0.582 6.582 11 N -0.700 5.700 12 C 0.152 3.848 13 C 0.078 3.922 14 N -0.654 5.654 15 C 0.070 3.930 16 C 0.442 3.558 17 O -0.615 6.615 18 N -0.576 5.576 19 C -0.329 4.329 20 H 0.082 0.918 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.991 3.009 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.273 1.273 27 C -0.119 4.119 28 C -0.129 4.129 29 C -0.168 4.168 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.417 0.583 38 H 0.050 0.950 39 H 0.083 0.917 40 H 0.352 0.648 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.393 0.607 44 H 0.276 0.724 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.069 0.931 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.967 7.133 -7.591 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 H 0.085 0.915 4 O -0.308 6.308 5 C -0.035 4.035 6 C -0.176 4.176 7 C -0.155 4.155 8 H 0.160 0.840 9 C 0.304 3.696 10 O -0.463 6.463 11 N -0.351 5.351 12 C 0.027 3.973 13 C -0.013 4.013 14 N -0.286 5.286 15 C -0.062 4.062 16 C 0.230 3.770 17 O -0.501 6.501 18 N -0.213 5.213 19 C -0.458 4.458 20 H 0.100 0.900 21 C -0.213 4.213 22 N -0.564 5.564 23 Si 0.815 3.185 24 H -0.195 1.195 25 H -0.198 1.198 26 H -0.199 1.199 27 C -0.157 4.157 28 C -0.166 4.166 29 C -0.208 4.208 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.094 0.906 37 H 0.254 0.746 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.173 0.827 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.226 0.774 44 H 0.086 0.914 45 H 0.109 0.891 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.100 0.900 49 H 0.088 0.912 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.541 7.173 -6.735 20.112 hybrid contribution 1.955 -0.252 -0.231 1.985 sum -15.586 6.921 -6.965 18.421 Atomic orbital electron populations 1.21898 0.91197 1.03603 1.03265 1.22841 0.96727 0.95824 0.82972 0.91545 1.88841 1.39853 1.68014 1.34065 1.23607 0.87056 0.96474 0.96347 1.23117 1.00339 0.98391 0.95788 1.22733 0.99669 0.95763 0.97348 0.83994 1.20677 0.79812 0.87858 0.81267 1.90659 1.62851 1.20506 1.72239 1.45729 1.50386 1.16190 1.22787 1.21052 0.93908 0.91927 0.90390 1.22652 0.96759 0.89207 0.92706 1.59824 1.28370 1.16234 1.24219 1.21368 0.93019 0.93554 0.98267 1.20750 0.82070 0.91650 0.82546 1.90489 1.62473 1.34784 1.62311 1.41966 1.26837 1.08946 1.43517 1.19693 1.11195 0.87122 1.27816 0.90036 1.26023 0.96617 1.01817 0.96867 1.69689 1.23102 1.26974 1.36596 0.84900 0.78035 0.77571 0.78044 1.19475 1.19769 1.19862 1.23099 0.99128 0.98778 0.94687 1.22767 0.95774 0.97571 1.00521 1.23628 0.97850 1.00738 0.98583 0.90736 0.91756 0.89825 0.93937 0.87316 0.87260 0.90588 0.74621 0.93128 0.89863 0.82711 0.89654 0.92097 0.77385 0.91444 0.89110 0.90084 0.89246 0.89960 0.91180 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.36 71.98 0.67 -1.81 16 2 C 0.07 1.80 3.67 30.97 0.11 1.91 16 3 H 0.07 1.96 6.43 -2.39 -0.02 1.94 16 4 O -0.39 -10.80 11.19 -148.98 -1.67 -12.47 16 5 C 0.04 1.10 7.72 72.66 0.56 1.66 16 6 C -0.14 -3.18 6.70 31.90 0.21 -2.96 16 7 C -0.13 -2.87 3.07 -10.55 -0.03 -2.90 16 8 H 0.14 2.13 7.70 -2.39 -0.02 2.11 16 9 C 0.52 13.50 7.05 87.66 0.62 14.12 16 10 O -0.58 -19.43 15.25 -3.03 -0.05 -19.47 16 11 N -0.70 -15.91 5.23 -463.07 -2.42 -18.33 16 12 C 0.15 3.34 4.49 86.38 0.39 3.73 16 13 C 0.08 1.54 0.77 4.05 0.00 1.54 16 14 N -0.65 -17.33 5.36 -471.55 -2.53 -19.86 16 15 C 0.07 2.29 5.80 85.56 0.50 2.78 16 16 C 0.44 20.01 7.83 87.65 0.69 20.69 16 17 O -0.61 -31.75 15.86 -3.06 -0.05 -31.80 16 18 N -0.58 -28.93 5.29 -306.99 -1.62 -30.55 16 19 C -0.33 -18.28 9.68 84.04 0.81 -17.47 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 22 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 23 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 27 C -0.12 -1.77 7.36 31.18 0.23 -1.55 16 28 C -0.13 -1.70 7.74 31.18 0.24 -1.46 16 29 C -0.17 -2.91 6.61 31.12 0.21 -2.70 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.08 2.03 7.74 -2.38 -0.02 2.01 16 37 H 0.42 8.91 8.11 -92.71 -0.75 8.16 16 38 H 0.05 1.33 7.33 -2.39 -0.02 1.32 16 39 H 0.08 1.66 7.35 -2.39 -0.02 1.64 16 40 H 0.35 9.68 8.38 -89.70 -0.75 8.93 16 41 H 0.09 2.79 6.85 -2.38 -0.02 2.77 16 42 H 0.06 1.81 7.62 -2.39 -0.02 1.79 16 43 H 0.39 19.23 7.90 -92.71 -0.73 18.50 16 44 H 0.28 14.01 8.31 -92.70 -0.77 13.24 16 45 H 0.09 1.35 8.01 -2.39 -0.02 1.33 16 46 H 0.08 1.11 8.10 -2.39 -0.02 1.09 16 47 H 0.09 1.08 7.66 -2.39 -0.02 1.06 16 48 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 49 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 50 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -69.10 403.31 -1.61 -70.70 By element: Atomic # 1 Polarization: 52.71 SS G_CDS: -1.26 Total: 51.45 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 5.68 Total: 15.32 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -6.29 Total: -118.30 kcal Atomic # 8 Polarization: -61.97 SS G_CDS: -1.76 Total: -63.73 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -69.10 -1.61 -70.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733726671.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.964 kcal (2) G-P(sol) polarization free energy of solvation -69.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds