Wall clock time and date at job start Tue Mar 31 2020 23:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.86729 * 2 1 4 4 O 1.43739 * 109.88227 * 238.98955 * 2 1 3 5 5 C 1.44576 * 106.87022 * 214.16967 * 4 2 1 6 6 C 1.54992 * 103.58245 * 39.88121 * 5 4 2 7 7 C 1.54103 * 109.87601 * 121.00070 * 2 1 3 8 8 H 1.08995 * 110.49225 * 2.78224 * 7 2 1 9 9 C 1.50705 * 110.48516 * 240.13090 * 7 2 1 10 10 O 1.21281 * 120.00295 * 0.02562 * 9 7 2 11 11 N 1.34774 * 119.99570 * 179.97438 * 9 7 2 12 12 C 1.46501 * 120.00073 * 180.02562 * 11 9 7 13 13 C 1.52995 * 109.47507 * 175.80220 * 12 11 9 14 14 N 1.46900 * 112.84843 * 48.53013 * 13 12 11 15 15 C 1.46897 * 110.99715 * 61.43286 * 14 13 12 16 16 C 1.50704 * 109.46985 * 178.41252 * 15 14 13 17 17 O 1.21297 * 119.99945 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00265 * 180.02562 * 16 15 14 19 19 C 1.37093 * 120.00537 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99451 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00370 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99943 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00094 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47200 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47462 * 120.00042 * 23 21 19 26 26 H 1.48503 * 109.46945 * 240.00264 * 23 21 19 27 27 C 1.53780 * 113.61490 * 277.22862 * 13 12 11 28 28 C 1.53786 * 87.08224 * 220.01992 * 27 13 12 29 29 C 1.53777 * 87.07804 * 25.43012 * 28 27 13 30 30 H 1.09000 * 109.47926 * 299.30063 * 1 2 3 31 31 H 1.08996 * 109.47518 * 59.30506 * 1 2 3 32 32 H 1.09010 * 109.46902 * 179.30230 * 1 2 3 33 33 H 1.08991 * 110.50531 * 281.38042 * 5 4 2 34 34 H 1.08996 * 110.77325 * 158.50701 * 5 4 2 35 35 H 1.09007 * 110.90508 * 204.85589 * 6 5 4 36 36 H 1.08996 * 110.90972 * 81.25576 * 6 5 4 37 37 H 0.97004 * 120.00319 * 0.02562 * 11 9 7 38 38 H 1.09007 * 109.47129 * 295.80615 * 12 11 9 39 39 H 1.09005 * 109.47048 * 55.79825 * 12 11 9 40 40 H 1.00908 * 110.99689 * 185.38331 * 14 13 12 41 41 H 1.08994 * 109.47119 * 298.40912 * 15 14 13 42 42 H 1.08999 * 109.47161 * 58.41473 * 15 14 13 43 43 H 0.97008 * 119.99688 * 359.97438 * 18 16 15 44 44 H 0.96997 * 119.99949 * 180.02562 * 22 21 19 45 45 H 1.09004 * 113.61636 * 334.56451 * 27 13 12 46 46 H 1.09002 * 113.62118 * 105.46764 * 27 13 12 47 47 H 1.09002 * 113.60890 * 270.88310 * 28 27 13 48 48 H 1.09000 * 113.69176 * 139.99689 * 28 27 13 49 49 H 1.09003 * 113.60998 * 220.01893 * 29 28 27 50 50 H 1.09002 * 113.61586 * 89.12049 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6964 -1.1585 5 6 3.2380 -1.3651 -0.7627 6 6 2.9195 -1.8904 0.6603 7 6 2.0539 -0.7464 1.2422 8 1 1.2246 -1.1523 1.8215 9 6 2.8944 0.1706 2.0930 10 8 3.0699 1.3216 1.7533 11 7 3.4502 -0.2882 3.2319 12 6 4.2668 0.6033 4.0593 13 6 4.6871 -0.1281 5.3357 14 7 5.2375 -1.4644 5.0725 15 6 6.4467 -1.3815 4.2425 16 6 7.0036 -2.7651 4.0266 17 8 6.4480 -3.7257 4.5164 18 7 8.1194 -2.9350 3.2901 19 6 8.6264 -4.1936 3.0941 20 1 8.1312 -5.0490 3.5295 21 6 9.7765 -4.3689 2.3343 22 7 10.3786 -3.3281 1.8041 23 14 10.4667 -6.0839 2.0667 24 1 9.6105 -7.0766 2.7644 25 1 10.4919 -6.3861 0.6130 26 1 11.8469 -6.1524 2.6105 27 6 3.6156 -0.1075 6.4387 28 6 4.7627 0.1098 7.4397 29 6 5.5579 0.7229 6.2750 30 1 -0.3635 0.5029 0.8961 31 1 -0.3634 0.5246 -0.8836 32 1 -0.3633 -1.0277 -0.0125 33 1 4.0685 -0.6598 -0.7345 34 1 3.4613 -2.1925 -1.4362 35 1 3.8332 -2.0205 1.2404 36 1 2.3540 -2.8210 0.6139 37 1 3.3096 -1.2086 3.5038 38 1 5.1551 0.9031 3.5031 39 1 3.6868 1.4882 4.3217 40 1 5.4234 -1.9550 5.9344 41 1 6.1966 -0.9362 3.2796 42 1 7.1912 -0.7646 4.7458 43 1 8.5639 -2.1667 2.8987 44 1 11.1813 -3.4505 1.2735 45 1 2.9320 0.7386 6.3676 46 1 3.1004 -1.0597 6.5649 47 1 5.1910 -0.8173 7.8207 48 1 4.5255 0.8225 8.2296 49 1 6.6108 0.4409 6.2691 50 1 5.4054 1.7959 6.1592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733726675.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:18 Heat of formation + Delta-G solvation = -101.880081 kcal Electronic energy + Delta-G solvation = -30795.548376 eV Core-core repulsion = 26630.053833 eV Total energy + Delta-G solvation = -4165.494543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73866 -39.97801 -38.28453 -38.01075 -34.53499 -34.12254 -33.03137 -32.58639 -31.54739 -31.26029 -28.38793 -26.81795 -26.21099 -25.76398 -24.15495 -22.81022 -22.33488 -21.49795 -20.07601 -19.34037 -18.89204 -17.97330 -17.53060 -16.50554 -16.18561 -16.11721 -15.97462 -15.40552 -15.22243 -15.00735 -14.78612 -14.53967 -14.21986 -14.15925 -13.73326 -13.53615 -13.35946 -13.26300 -12.70516 -12.67459 -12.63167 -12.46836 -12.32877 -12.00136 -11.78425 -11.58970 -11.45295 -11.42678 -11.16999 -11.12314 -10.98495 -10.89399 -10.76173 -10.39219 -10.35953 -10.27377 -9.93531 -9.58275 -9.57197 -9.03106 -8.57042 -8.22851 -8.03034 -6.47562 -3.88860 2.57446 3.09467 3.11981 3.23375 3.29843 3.75197 3.82266 3.94137 4.20098 4.35655 4.38964 4.44458 4.58902 4.59710 4.68390 4.73094 4.92367 5.03140 5.09886 5.18037 5.19425 5.24665 5.26408 5.44777 5.49418 5.51547 5.53191 5.55559 5.61968 5.67590 5.69259 5.78785 5.83121 5.86398 5.87397 5.92000 5.94842 6.02103 6.04877 6.08018 6.21424 6.43922 6.80745 7.08235 7.48575 7.49613 7.55598 7.99428 8.20416 8.53529 9.11379 9.47077 9.97438 10.69914 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008117 B = 0.003668 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3448.680035 B = 7632.531187 C =10339.621400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 H 0.093 0.907 4 O -0.374 6.374 5 C 0.047 3.953 6 C -0.145 4.145 7 C -0.143 4.143 8 H 0.111 0.889 9 C 0.519 3.481 10 O -0.546 6.546 11 N -0.710 5.710 12 C 0.142 3.858 13 C 0.080 3.920 14 N -0.641 5.641 15 C 0.048 3.952 16 C 0.439 3.561 17 O -0.585 6.585 18 N -0.561 5.561 19 C -0.300 4.300 20 H 0.104 0.896 21 C 0.024 3.976 22 N -0.899 5.899 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.281 1.281 27 C -0.128 4.128 28 C -0.142 4.142 29 C -0.169 4.169 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.414 0.586 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.356 0.644 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.186 8.884 3.663 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 H 0.110 0.890 4 O -0.294 6.294 5 C -0.029 4.029 6 C -0.183 4.183 7 C -0.164 4.164 8 H 0.129 0.871 9 C 0.305 3.695 10 O -0.424 6.424 11 N -0.362 5.362 12 C 0.017 3.983 13 C -0.012 4.012 14 N -0.274 5.274 15 C -0.084 4.084 16 C 0.225 3.775 17 O -0.469 6.469 18 N -0.197 5.197 19 C -0.430 4.430 20 H 0.122 0.878 21 C -0.178 4.178 22 N -0.540 5.540 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.166 4.166 28 C -0.180 4.180 29 C -0.209 4.209 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.251 0.749 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.177 0.823 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.105 0.895 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.759 8.913 2.903 18.336 hybrid contribution 1.589 -0.435 0.625 1.762 sum -14.170 8.478 3.528 16.885 Atomic orbital electron populations 1.21917 0.93613 1.02599 1.02473 1.22754 0.94889 0.97170 0.82961 0.88973 1.88898 1.39875 1.67808 1.32792 1.23584 0.87783 0.96571 0.94993 1.23162 1.00688 0.97498 0.96979 1.22719 0.99321 0.96586 0.97793 0.87120 1.20327 0.79880 0.88096 0.81206 1.90670 1.61503 1.18855 1.71395 1.45833 1.51168 1.16224 1.22951 1.21280 0.94812 0.92210 0.89962 1.22372 0.96458 0.89762 0.92657 1.60024 1.30743 1.13340 1.23245 1.21686 0.91135 0.96996 0.98572 1.19744 0.83434 0.89748 0.84611 1.90527 1.61155 1.41583 1.53680 1.41866 1.22982 1.09663 1.45184 1.19737 1.07765 0.85551 1.29949 0.87848 1.25270 0.96651 0.99323 0.96596 1.69617 1.20238 1.29794 1.34372 0.85813 0.78683 0.81826 0.78105 1.19197 1.20678 1.20745 1.23063 0.96204 1.02776 0.94523 1.22820 0.97277 1.01242 0.96641 1.23621 0.99798 1.00523 0.96950 0.91369 0.91707 0.91971 0.91888 0.88466 0.89020 0.89272 0.74943 0.91664 0.90931 0.82291 0.89631 0.93528 0.77487 0.91840 0.89540 0.90438 0.89996 0.91245 0.90958 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.36 37.16 0.35 -1.05 16 2 C 0.08 0.96 3.66 -26.16 -0.10 0.86 16 3 H 0.09 1.28 6.43 -51.93 -0.33 0.95 16 4 O -0.37 -5.04 11.20 -35.23 -0.39 -5.43 16 5 C 0.05 0.58 7.72 38.21 0.29 0.87 16 6 C -0.15 -1.63 6.70 -24.73 -0.17 -1.79 16 7 C -0.14 -1.56 3.07 -90.24 -0.28 -1.84 16 8 H 0.11 0.98 7.70 -51.93 -0.40 0.58 16 9 C 0.52 6.73 7.05 -10.98 -0.08 6.66 16 10 O -0.55 -8.81 15.25 5.56 0.08 -8.73 16 11 N -0.71 -8.32 5.29 -60.29 -0.32 -8.63 16 12 C 0.14 1.63 4.48 -4.04 -0.02 1.61 16 13 C 0.08 0.86 0.79 -130.79 -0.10 0.75 16 14 N -0.64 -8.76 5.33 -100.40 -0.53 -9.29 16 15 C 0.05 0.78 5.74 -4.98 -0.03 0.75 16 16 C 0.44 9.69 7.82 -10.98 -0.09 9.60 16 17 O -0.58 -14.78 15.74 5.54 0.09 -14.70 16 18 N -0.56 -13.63 5.29 -10.96 -0.06 -13.69 16 19 C -0.30 -8.11 9.68 -14.94 -0.14 -8.26 16 20 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -23.99 13.05 55.50 0.72 -23.26 16 23 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 C -0.13 -1.15 7.37 -25.92 -0.19 -1.34 16 28 C -0.14 -1.27 7.74 -25.92 -0.20 -1.47 16 29 C -0.17 -1.65 7.17 -25.92 -0.19 -1.84 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.13 7.74 -51.93 -0.40 0.73 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.41 4.75 7.95 -40.82 -0.32 4.43 16 38 H 0.07 0.84 7.40 -51.93 -0.38 0.45 16 39 H 0.07 0.80 7.94 -51.93 -0.41 0.39 16 40 H 0.36 5.20 7.53 -39.29 -0.30 4.90 16 41 H 0.09 1.36 6.98 -51.93 -0.36 0.99 16 42 H 0.05 0.70 6.83 -51.93 -0.35 0.35 16 43 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 44 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.09 0.70 7.96 -51.93 -0.41 0.29 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.08 0.78 7.71 -51.93 -0.40 0.38 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.79 6.93 -51.93 -0.36 0.43 16 50 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 401.57 15.07 6.05 6.05 Total: -1.00 -31.08 401.57 -8.49 -39.57 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -8.08 Total: 18.51 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -1.03 Total: 4.05 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.19 Total: -54.88 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.22 Total: -28.86 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.08 -8.49 -39.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733726675.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.309 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds