Wall clock time and date at job start Tue Mar 31 2020 23:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.86729 * 2 1 4 4 O 1.43739 * 109.88227 * 238.98955 * 2 1 3 5 5 C 1.44576 * 106.87022 * 214.16967 * 4 2 1 6 6 C 1.54992 * 103.58245 * 39.88121 * 5 4 2 7 7 C 1.54103 * 109.87601 * 121.00070 * 2 1 3 8 8 H 1.08995 * 110.49225 * 2.78224 * 7 2 1 9 9 C 1.50705 * 110.48516 * 240.13090 * 7 2 1 10 10 O 1.21281 * 120.00295 * 0.02562 * 9 7 2 11 11 N 1.34774 * 119.99570 * 179.97438 * 9 7 2 12 12 C 1.46501 * 120.00073 * 180.02562 * 11 9 7 13 13 C 1.52995 * 109.47507 * 175.80220 * 12 11 9 14 14 N 1.46900 * 112.84843 * 48.53013 * 13 12 11 15 15 C 1.46897 * 110.99715 * 61.43286 * 14 13 12 16 16 C 1.50704 * 109.46985 * 178.41252 * 15 14 13 17 17 O 1.21297 * 119.99945 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00265 * 180.02562 * 16 15 14 19 19 C 1.37093 * 120.00537 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99451 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00370 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99943 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00094 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47200 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47462 * 120.00042 * 23 21 19 26 26 H 1.48503 * 109.46945 * 240.00264 * 23 21 19 27 27 C 1.53780 * 113.61490 * 277.22862 * 13 12 11 28 28 C 1.53786 * 87.08224 * 220.01992 * 27 13 12 29 29 C 1.53777 * 87.07804 * 25.43012 * 28 27 13 30 30 H 1.09000 * 109.47926 * 299.30063 * 1 2 3 31 31 H 1.08996 * 109.47518 * 59.30506 * 1 2 3 32 32 H 1.09010 * 109.46902 * 179.30230 * 1 2 3 33 33 H 1.08991 * 110.50531 * 281.38042 * 5 4 2 34 34 H 1.08996 * 110.77325 * 158.50701 * 5 4 2 35 35 H 1.09007 * 110.90508 * 204.85589 * 6 5 4 36 36 H 1.08996 * 110.90972 * 81.25576 * 6 5 4 37 37 H 0.97004 * 120.00319 * 0.02562 * 11 9 7 38 38 H 1.09007 * 109.47129 * 295.80615 * 12 11 9 39 39 H 1.09005 * 109.47048 * 55.79825 * 12 11 9 40 40 H 1.00908 * 110.99689 * 185.38331 * 14 13 12 41 41 H 1.08994 * 109.47119 * 298.40912 * 15 14 13 42 42 H 1.08999 * 109.47161 * 58.41473 * 15 14 13 43 43 H 0.97008 * 119.99688 * 359.97438 * 18 16 15 44 44 H 0.96997 * 119.99949 * 180.02562 * 22 21 19 45 45 H 1.09004 * 113.61636 * 334.56451 * 27 13 12 46 46 H 1.09002 * 113.62118 * 105.46764 * 27 13 12 47 47 H 1.09002 * 113.60890 * 270.88310 * 28 27 13 48 48 H 1.09000 * 113.69176 * 139.99689 * 28 27 13 49 49 H 1.09003 * 113.60998 * 220.01893 * 29 28 27 50 50 H 1.09002 * 113.61586 * 89.12049 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6964 -1.1585 5 6 3.2380 -1.3651 -0.7627 6 6 2.9195 -1.8904 0.6603 7 6 2.0539 -0.7464 1.2422 8 1 1.2246 -1.1523 1.8215 9 6 2.8944 0.1706 2.0930 10 8 3.0699 1.3216 1.7533 11 7 3.4502 -0.2882 3.2319 12 6 4.2668 0.6033 4.0593 13 6 4.6871 -0.1281 5.3357 14 7 5.2375 -1.4644 5.0725 15 6 6.4467 -1.3815 4.2425 16 6 7.0036 -2.7651 4.0266 17 8 6.4480 -3.7257 4.5164 18 7 8.1194 -2.9350 3.2901 19 6 8.6264 -4.1936 3.0941 20 1 8.1312 -5.0490 3.5295 21 6 9.7765 -4.3689 2.3343 22 7 10.3786 -3.3281 1.8041 23 14 10.4667 -6.0839 2.0667 24 1 9.6105 -7.0766 2.7644 25 1 10.4919 -6.3861 0.6130 26 1 11.8469 -6.1524 2.6105 27 6 3.6156 -0.1075 6.4387 28 6 4.7627 0.1098 7.4397 29 6 5.5579 0.7229 6.2750 30 1 -0.3635 0.5029 0.8961 31 1 -0.3634 0.5246 -0.8836 32 1 -0.3633 -1.0277 -0.0125 33 1 4.0685 -0.6598 -0.7345 34 1 3.4613 -2.1925 -1.4362 35 1 3.8332 -2.0205 1.2404 36 1 2.3540 -2.8210 0.6139 37 1 3.3096 -1.2086 3.5038 38 1 5.1551 0.9031 3.5031 39 1 3.6868 1.4882 4.3217 40 1 5.4234 -1.9550 5.9344 41 1 6.1966 -0.9362 3.2796 42 1 7.1912 -0.7646 4.7458 43 1 8.5639 -2.1667 2.8987 44 1 11.1813 -3.4505 1.2735 45 1 2.9320 0.7386 6.3676 46 1 3.1004 -1.0597 6.5649 47 1 5.1910 -0.8173 7.8207 48 1 4.5255 0.8225 8.2296 49 1 6.6108 0.4409 6.2691 50 1 5.4054 1.7959 6.1592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733726675.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:17 Heat of formation + Delta-G solvation = -125.227494 kcal Electronic energy + Delta-G solvation = -30796.560795 eV Core-core repulsion = 26630.053833 eV Total energy + Delta-G solvation = -4166.506963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.72708 -40.96795 -39.82631 -39.23522 -36.02935 -35.53231 -34.30257 -33.55916 -33.22076 -32.41584 -29.38856 -28.25546 -27.11335 -26.71074 -25.78087 -23.74428 -23.25554 -22.42000 -21.10463 -21.04317 -19.92008 -19.81732 -18.52635 -17.84641 -17.28959 -17.09511 -17.05603 -16.69050 -16.36785 -16.26721 -15.99555 -15.84335 -15.71549 -15.52983 -14.82652 -14.74151 -14.40022 -14.21821 -14.10004 -13.83189 -13.55006 -13.50859 -13.28936 -13.24405 -13.11304 -12.94173 -12.74195 -12.47441 -12.39823 -12.36199 -12.11712 -12.06410 -11.87308 -11.69533 -11.59352 -11.50982 -11.19942 -10.94587 -10.59398 -10.35136 -10.04331 -10.01925 -9.40624 -8.47034 -5.95680 1.36179 1.42202 1.54991 1.55781 2.03825 2.12999 2.28343 2.80432 2.84570 3.20435 3.42100 3.44954 3.55336 3.64374 3.69192 3.76379 3.81033 3.93447 4.02546 4.21384 4.24789 4.25826 4.36522 4.42273 4.44779 4.50061 4.61131 4.64822 4.69340 4.72120 4.76120 4.82412 4.85618 4.94067 4.97258 5.06419 5.10011 5.14062 5.19175 5.25629 5.33296 5.41339 5.47054 5.85610 5.88866 6.07632 6.34615 6.55994 6.58189 7.12095 7.20300 7.55296 8.09197 8.70438 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008117 B = 0.003668 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3448.680035 B = 7632.531187 C =10339.621400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.075 3.925 3 H 0.067 0.933 4 O -0.389 6.389 5 C 0.041 3.959 6 C -0.140 4.140 7 C -0.135 4.135 8 H 0.140 0.860 9 C 0.517 3.483 10 O -0.581 6.581 11 N -0.702 5.702 12 C 0.142 3.858 13 C 0.079 3.921 14 N -0.643 5.643 15 C 0.067 3.933 16 C 0.442 3.558 17 O -0.616 6.616 18 N -0.573 5.573 19 C -0.330 4.330 20 H 0.082 0.918 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.273 1.273 26 H -0.273 1.273 27 C -0.117 4.117 28 C -0.138 4.138 29 C -0.166 4.166 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.417 0.583 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.352 0.648 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.394 0.606 44 H 0.277 0.723 45 H 0.103 0.897 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.060 0.940 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.334 8.867 4.524 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.017 3.983 3 H 0.085 0.915 4 O -0.309 6.309 5 C -0.035 4.035 6 C -0.178 4.178 7 C -0.157 4.157 8 H 0.158 0.842 9 C 0.304 3.696 10 O -0.462 6.462 11 N -0.353 5.353 12 C 0.018 3.982 13 C -0.013 4.013 14 N -0.275 5.275 15 C -0.065 4.065 16 C 0.229 3.771 17 O -0.503 6.503 18 N -0.210 5.210 19 C -0.459 4.459 20 H 0.100 0.900 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.815 3.185 24 H -0.195 1.195 25 H -0.198 1.198 26 H -0.198 1.198 27 C -0.154 4.154 28 C -0.175 4.175 29 C -0.206 4.206 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.128 0.872 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.254 0.746 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.173 0.827 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.227 0.773 44 H 0.086 0.914 45 H 0.121 0.879 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.104 0.896 49 H 0.078 0.922 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.912 8.908 3.781 19.485 hybrid contribution 1.918 -0.374 0.383 1.991 sum -14.994 8.535 4.164 17.748 Atomic orbital electron populations 1.21904 0.91392 1.03546 1.03225 1.22812 0.96615 0.95881 0.82972 0.91470 1.88884 1.40112 1.68005 1.33854 1.23656 0.87111 0.96557 0.96181 1.23132 1.00396 0.98322 0.95914 1.22732 0.99712 0.95839 0.97370 0.84244 1.20671 0.79728 0.87843 0.81365 1.90657 1.62865 1.20477 1.72221 1.45820 1.50582 1.16299 1.22612 1.21318 0.94322 0.92633 0.89957 1.22429 0.97640 0.88337 0.92922 1.59990 1.29237 1.15403 1.22892 1.21436 0.92398 0.92985 0.99671 1.20696 0.82154 0.91687 0.82558 1.90500 1.61781 1.43544 1.54446 1.41943 1.23934 1.08961 1.46170 1.19693 1.08797 0.86131 1.31291 0.90031 1.26021 0.96439 1.02914 0.95876 1.69683 1.20575 1.31359 1.34609 0.84898 0.78016 0.77408 0.78211 1.19515 1.19794 1.19824 1.23045 0.95928 1.03403 0.93071 1.22795 0.96707 1.01212 0.96792 1.23631 0.98922 1.01234 0.96842 0.89928 0.91745 0.90825 0.93574 0.87188 0.90356 0.87396 0.74613 0.93232 0.89970 0.82700 0.89074 0.92029 0.77288 0.91404 0.87894 0.90592 0.90766 0.89584 0.92161 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.36 71.98 0.67 -1.77 16 2 C 0.08 1.75 3.66 30.97 0.11 1.87 16 3 H 0.07 1.91 6.43 -2.39 -0.02 1.90 16 4 O -0.39 -10.36 11.20 -148.98 -1.67 -12.03 16 5 C 0.04 1.01 7.72 72.66 0.56 1.57 16 6 C -0.14 -3.00 6.70 31.89 0.21 -2.79 16 7 C -0.14 -2.80 3.07 -10.55 -0.03 -2.83 16 8 H 0.14 2.08 7.70 -2.39 -0.02 2.06 16 9 C 0.52 13.09 7.05 87.66 0.62 13.71 16 10 O -0.58 -18.85 15.25 -3.03 -0.05 -18.90 16 11 N -0.70 -15.68 5.29 -463.05 -2.45 -18.13 16 12 C 0.14 3.08 4.48 86.38 0.39 3.47 16 13 C 0.08 1.55 0.79 4.05 0.00 1.55 16 14 N -0.64 -16.94 5.33 -471.56 -2.51 -19.45 16 15 C 0.07 2.15 5.74 85.56 0.49 2.64 16 16 C 0.44 19.69 7.82 87.66 0.69 20.38 16 17 O -0.62 -31.58 15.74 -3.08 -0.05 -31.63 16 18 N -0.57 -28.41 5.29 -306.98 -1.62 -30.03 16 19 C -0.33 -18.15 9.68 84.04 0.81 -17.34 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.22 13.05 21.66 0.28 -48.93 16 23 Si 0.99 42.14 29.55 68.60 2.03 44.17 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 C -0.12 -1.80 7.37 31.12 0.23 -1.57 16 28 C -0.14 -2.11 7.74 31.12 0.24 -1.87 16 29 C -0.17 -2.91 7.17 31.12 0.22 -2.69 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.08 1.91 7.74 -2.38 -0.02 1.89 16 36 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.42 8.98 7.95 -92.71 -0.74 8.24 16 38 H 0.05 1.24 7.40 -2.38 -0.02 1.23 16 39 H 0.08 1.66 7.94 -2.38 -0.02 1.64 16 40 H 0.35 9.98 7.53 -89.69 -0.68 9.31 16 41 H 0.09 2.85 6.98 -2.39 -0.02 2.84 16 42 H 0.06 1.81 6.83 -2.39 -0.02 1.79 16 43 H 0.39 18.94 7.90 -92.70 -0.73 18.21 16 44 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 45 H 0.10 1.31 7.96 -2.39 -0.02 1.29 16 46 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.07 1.28 7.71 -2.39 -0.02 1.26 16 48 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.06 1.22 6.93 -2.39 -0.02 1.20 16 50 H 0.10 1.50 8.10 -2.39 -0.02 1.48 16 Total: -1.00 -67.86 401.57 -1.52 -69.37 By element: Atomic # 1 Polarization: 52.62 SS G_CDS: -1.17 Total: 51.45 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 5.69 Total: 14.11 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -6.30 Total: -116.55 kcal Atomic # 8 Polarization: -60.79 SS G_CDS: -1.76 Total: -62.55 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -67.86 -1.52 -69.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733726675.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.854 kcal (2) G-P(sol) polarization free energy of solvation -67.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds