Wall clock time and date at job start Tue Mar 31 2020 23:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87414 * 2 1 4 4 O 1.43745 * 109.88001 * 121.16119 * 2 1 3 5 5 C 1.44384 * 106.97709 * 145.93332 * 4 2 1 6 6 C 1.54993 * 103.49035 * 319.94344 * 5 4 2 7 7 C 1.54101 * 109.87929 * 238.99163 * 2 1 3 8 8 H 1.09002 * 110.49004 * 119.73582 * 7 2 1 9 9 C 1.50703 * 110.48861 * 357.22622 * 7 2 1 10 10 O 1.21285 * 119.99655 * 274.43299 * 9 7 2 11 11 N 1.34774 * 120.00249 * 94.42796 * 9 7 2 12 12 C 1.46504 * 119.99965 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.46720 * 174.85958 * 12 11 9 14 14 N 1.46899 * 112.85233 * 65.63187 * 13 12 11 15 15 C 1.46902 * 110.99795 * 65.52712 * 14 13 12 16 16 C 1.50706 * 109.46945 * 175.10849 * 15 14 13 17 17 O 1.21294 * 119.99693 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00040 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99990 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00021 * 0.02562 * 19 18 16 21 21 C 1.38955 * 120.00056 * 179.72436 * 19 18 16 22 22 N 1.31407 * 120.00249 * 0.28451 * 21 19 18 23 23 Si 1.86805 * 120.00235 * 180.27654 * 21 19 18 24 24 H 1.48499 * 109.46744 * 60.00279 * 23 21 19 25 25 H 1.48494 * 109.47122 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46768 * 300.00482 * 23 21 19 27 27 C 1.53782 * 113.61181 * 196.82662 * 13 12 11 28 28 C 1.53953 * 87.02253 * 89.23136 * 27 13 12 29 29 C 1.53781 * 113.61719 * 294.43125 * 13 12 11 30 30 H 1.09000 * 109.47243 * 185.51767 * 1 2 3 31 31 H 1.09003 * 109.47023 * 305.51794 * 1 2 3 32 32 H 1.09005 * 109.47019 * 65.51581 * 1 2 3 33 33 H 1.08994 * 110.61520 * 78.44119 * 5 4 2 34 34 H 1.08999 * 110.61738 * 201.28333 * 5 4 2 35 35 H 1.09004 * 110.90622 * 278.82313 * 6 5 4 36 36 H 1.08996 * 110.91027 * 155.22202 * 6 5 4 37 37 H 0.96998 * 119.99610 * 0.02562 * 11 9 7 38 38 H 1.08996 * 109.47178 * 54.85968 * 12 11 9 39 39 H 1.09000 * 109.46987 * 294.85719 * 12 11 9 40 40 H 1.00904 * 111.00040 * 189.48268 * 14 13 12 41 41 H 1.09006 * 109.46794 * 55.11788 * 15 14 13 42 42 H 1.08993 * 109.47489 * 295.11397 * 15 14 13 43 43 H 0.97002 * 120.00170 * 0.02562 * 18 16 15 44 44 H 0.96996 * 120.00795 * 179.97438 * 22 21 19 45 45 H 1.09000 * 113.61779 * 203.75111 * 27 13 12 46 46 H 1.09000 * 113.61344 * 334.65168 * 27 13 12 47 47 H 1.09004 * 113.53337 * 270.81654 * 28 27 13 48 48 H 1.08994 * 113.67174 * 139.93626 * 28 27 13 49 49 H 1.09003 * 113.60798 * 25.35073 * 29 13 12 50 50 H 1.08998 * 113.61658 * 156.17108 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 1.1567 5 6 3.2379 -1.3653 0.7629 6 6 2.9195 -1.8906 -0.6601 7 6 2.0540 -0.7466 -1.2421 8 1 2.6600 -0.0828 -1.8588 9 6 0.9073 -1.3077 -2.0430 10 8 0.4411 -2.3904 -1.7579 11 7 0.3999 -0.6063 -3.0760 12 6 -0.7151 -1.1516 -3.8542 13 6 -1.1803 -0.1121 -4.8760 14 7 -0.1658 0.1765 -5.8984 15 6 0.0878 -1.0032 -6.7362 16 6 1.0408 -0.6368 -7.8446 17 8 1.4672 0.4957 -7.9281 18 7 1.4201 -1.5675 -8.7425 19 6 2.2875 -1.2343 -9.7505 20 1 2.6672 -0.2260 -9.8248 21 6 2.6830 -2.1954 -10.6728 22 7 2.2213 -3.4223 -10.5822 23 14 3.8710 -1.7432 -12.0417 24 1 5.1473 -1.2655 -11.4517 25 1 4.1314 -2.9371 -12.8855 26 1 3.2781 -0.6675 -12.8763 27 6 -2.5751 -0.4000 -5.4562 28 6 -3.1436 0.4218 -4.2850 29 6 -1.7890 1.1483 -4.2391 30 1 -0.3634 -1.0229 0.0988 31 1 -0.3633 0.5970 0.8365 32 1 -0.3633 0.4259 -0.9353 33 1 4.0685 -0.6600 0.7347 34 1 3.4599 -2.1911 1.4388 35 1 2.3539 -2.8212 -0.6136 36 1 3.8331 -2.0209 -1.2402 37 1 0.7731 0.2594 -3.3042 38 1 -1.5395 -1.3973 -3.1848 39 1 -0.3889 -2.0520 -4.3747 40 1 -0.4355 0.9690 -6.4619 41 1 -0.8514 -1.3527 -7.1654 42 1 0.5255 -1.7941 -6.1272 43 1 1.0794 -2.4733 -8.6755 44 1 2.4971 -4.0932 -11.2262 45 1 -2.7446 0.0553 -6.4319 46 1 -2.8515 -1.4539 -5.4260 47 1 -3.3502 -0.1734 -3.3955 48 1 -3.9758 1.0670 -4.5665 49 1 -1.4317 1.3424 -3.2277 50 1 -1.7419 2.0281 -4.8809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733726681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:24 Heat of formation + Delta-G solvation = -99.494829 kcal Electronic energy + Delta-G solvation = -30499.093396 eV Core-core repulsion = 26333.702285 eV Total energy + Delta-G solvation = -4165.391111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.91492 -39.99797 -38.37183 -38.00988 -34.38251 -34.15906 -33.23152 -32.69307 -31.70888 -31.24256 -28.09747 -26.93840 -26.26103 -25.72943 -24.29681 -22.72814 -22.41415 -22.04075 -19.98646 -19.28147 -18.77905 -17.92761 -17.34094 -16.82059 -16.76106 -16.07569 -15.89923 -15.57712 -15.32781 -14.99952 -14.73873 -14.57734 -14.51413 -14.12245 -13.76796 -13.45662 -13.38411 -12.90783 -12.76699 -12.63500 -12.54008 -12.39014 -12.34237 -12.23937 -11.93671 -11.58948 -11.47689 -11.39946 -11.23698 -11.14491 -11.11120 -11.01413 -10.77567 -10.47400 -10.41093 -10.24052 -10.13864 -9.73222 -9.53777 -9.06409 -8.49128 -8.12800 -7.99953 -6.44900 -3.86180 2.52043 3.03445 3.17235 3.23513 3.27478 3.56899 3.85959 4.01432 4.18116 4.23197 4.37617 4.42276 4.47392 4.51952 4.61145 4.71166 4.80011 4.93654 5.02561 5.05131 5.09124 5.21599 5.24113 5.29701 5.33182 5.41615 5.48786 5.55768 5.58203 5.62407 5.64997 5.68717 5.73638 5.76882 5.87677 5.90468 5.94730 5.97605 6.02046 6.14590 6.23675 6.39160 6.61203 7.13730 7.47649 7.51502 7.58551 8.02013 8.16843 8.56768 9.13796 9.50208 10.00958 10.72601 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011401 B = 0.002730 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.322384 B =10252.733527 C =11928.124412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.092 3.908 3 H 0.077 0.923 4 O -0.371 6.371 5 C 0.049 3.951 6 C -0.143 4.143 7 C -0.145 4.145 8 H 0.104 0.896 9 C 0.529 3.471 10 O -0.541 6.541 11 N -0.713 5.713 12 C 0.151 3.849 13 C 0.080 3.920 14 N -0.653 5.653 15 C 0.050 3.950 16 C 0.439 3.561 17 O -0.587 6.587 18 N -0.561 5.561 19 C -0.301 4.301 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.167 4.167 28 C -0.139 4.139 29 C -0.128 4.128 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.408 0.592 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.355 0.645 41 H 0.046 0.954 42 H 0.084 0.916 43 H 0.392 0.608 44 H 0.273 0.727 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.146 5.448 19.233 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.034 3.966 3 H 0.095 0.905 4 O -0.290 6.290 5 C -0.028 4.028 6 C -0.181 4.181 7 C -0.167 4.167 8 H 0.123 0.877 9 C 0.314 3.686 10 O -0.419 6.419 11 N -0.365 5.365 12 C 0.027 3.973 13 C -0.013 4.013 14 N -0.286 5.286 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.471 6.471 18 N -0.197 5.197 19 C -0.431 4.431 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 C -0.207 4.207 28 C -0.177 4.177 29 C -0.166 4.166 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.244 0.756 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.176 0.824 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.226 0.774 44 H 0.083 0.917 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.099 0.901 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.709 5.133 19.841 21.274 hybrid contribution -0.068 -0.073 -1.775 1.778 sum -5.777 5.060 18.066 19.631 Atomic orbital electron populations 1.22130 0.93523 1.03951 1.02567 1.22558 0.95496 0.95136 0.83412 0.90476 1.88899 1.39835 1.67613 1.32636 1.23555 0.87506 0.96459 0.95278 1.23160 0.99990 0.99005 0.95921 1.22817 0.96625 0.99470 0.97798 0.87740 1.20063 0.83672 0.84843 0.79976 1.90692 1.61188 1.21217 1.68756 1.45868 1.35728 1.23410 1.31462 1.21016 0.89023 0.95393 0.91855 1.22552 0.89117 0.96015 0.93574 1.59981 1.44691 1.06868 1.17023 1.21647 0.98285 0.93744 0.94523 1.19794 0.86444 0.86497 0.84779 1.90516 1.59671 1.20855 1.76090 1.41855 1.41357 1.11506 1.25028 1.19647 1.21208 0.98013 1.04235 0.87975 1.25270 0.98565 0.94868 0.99147 1.69598 1.44622 1.02353 1.37586 0.85919 0.80377 0.77719 0.80218 1.19858 1.20942 1.19900 1.23642 0.97087 1.01145 0.98797 1.22788 0.97042 0.99144 0.98731 1.23061 0.95467 0.96702 1.01323 0.90826 0.91635 0.90952 0.91980 0.88652 0.88464 0.89621 0.75603 0.90801 0.91204 0.82380 0.93577 0.89772 0.77448 0.91749 0.89521 0.91044 0.90066 0.91210 0.91003 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 8.41 37.16 0.31 -1.26 16 2 C 0.09 0.88 4.05 -26.16 -0.11 0.77 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 4 O -0.37 -4.13 11.19 -35.23 -0.39 -4.53 16 5 C 0.05 0.42 7.72 38.21 0.29 0.71 16 6 C -0.14 -1.39 6.65 -24.73 -0.16 -1.55 16 7 C -0.15 -1.43 3.43 -90.24 -0.31 -1.74 16 8 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 9 C 0.53 6.45 4.76 -10.98 -0.05 6.40 16 10 O -0.54 -8.48 15.05 5.55 0.08 -8.40 16 11 N -0.71 -7.83 4.75 -60.29 -0.29 -8.12 16 12 C 0.15 1.74 4.86 -4.04 -0.02 1.72 16 13 C 0.08 0.87 0.63 -130.79 -0.08 0.78 16 14 N -0.65 -9.31 6.12 -100.39 -0.61 -9.92 16 15 C 0.05 0.85 5.75 -4.97 -0.03 0.82 16 16 C 0.44 10.04 7.81 -10.99 -0.09 9.95 16 17 O -0.59 -15.30 15.67 5.55 0.09 -15.22 16 18 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 20 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 22 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 23 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 C -0.17 -1.66 6.47 -25.83 -0.17 -1.83 16 28 C -0.14 -1.16 7.74 -25.83 -0.20 -1.36 16 29 C -0.13 -1.13 7.26 -25.92 -0.19 -1.32 16 30 H 0.07 0.87 7.18 -51.93 -0.37 0.50 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.62 6.96 -51.93 -0.36 0.26 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 1.15 6.91 -51.93 -0.36 0.79 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.41 4.11 8.44 -40.82 -0.34 3.77 16 38 H 0.07 0.82 7.31 -51.93 -0.38 0.44 16 39 H 0.07 0.93 6.74 -51.93 -0.35 0.58 16 40 H 0.36 5.37 8.05 -39.29 -0.32 5.06 16 41 H 0.05 0.72 7.35 -51.93 -0.38 0.33 16 42 H 0.08 1.39 6.86 -51.93 -0.36 1.04 16 43 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 47 H 0.08 0.64 7.61 -51.93 -0.40 0.25 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.59 7.93 -51.93 -0.41 0.18 16 50 H 0.09 0.79 8.00 -51.93 -0.42 0.37 16 LS Contribution 398.67 15.07 6.01 6.01 Total: -1.00 -32.34 398.67 -8.59 -40.93 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -8.08 Total: 16.99 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.04 Total: 4.16 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.23 Total: -55.80 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.22 Total: -28.14 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.34 -8.59 -40.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733726681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.564 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds