Wall clock time and date at job start Tue Mar 31 2020 23:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87414 * 2 1 4 4 O 1.43745 * 109.88001 * 121.16119 * 2 1 3 5 5 C 1.44384 * 106.97709 * 145.93332 * 4 2 1 6 6 C 1.54993 * 103.49035 * 319.94344 * 5 4 2 7 7 C 1.54101 * 109.87929 * 238.99163 * 2 1 3 8 8 H 1.09002 * 110.49004 * 119.73582 * 7 2 1 9 9 C 1.50703 * 110.48861 * 357.22622 * 7 2 1 10 10 O 1.21285 * 119.99655 * 274.43299 * 9 7 2 11 11 N 1.34774 * 120.00249 * 94.42796 * 9 7 2 12 12 C 1.46504 * 119.99965 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.46720 * 174.85958 * 12 11 9 14 14 N 1.46899 * 112.85233 * 65.63187 * 13 12 11 15 15 C 1.46902 * 110.99795 * 65.52712 * 14 13 12 16 16 C 1.50706 * 109.46945 * 175.10849 * 15 14 13 17 17 O 1.21294 * 119.99693 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00040 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99990 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00021 * 0.02562 * 19 18 16 21 21 C 1.38955 * 120.00056 * 179.72436 * 19 18 16 22 22 N 1.31407 * 120.00249 * 0.28451 * 21 19 18 23 23 Si 1.86805 * 120.00235 * 180.27654 * 21 19 18 24 24 H 1.48499 * 109.46744 * 60.00279 * 23 21 19 25 25 H 1.48494 * 109.47122 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46768 * 300.00482 * 23 21 19 27 27 C 1.53782 * 113.61181 * 196.82662 * 13 12 11 28 28 C 1.53953 * 87.02253 * 89.23136 * 27 13 12 29 29 C 1.53781 * 113.61719 * 294.43125 * 13 12 11 30 30 H 1.09000 * 109.47243 * 185.51767 * 1 2 3 31 31 H 1.09003 * 109.47023 * 305.51794 * 1 2 3 32 32 H 1.09005 * 109.47019 * 65.51581 * 1 2 3 33 33 H 1.08994 * 110.61520 * 78.44119 * 5 4 2 34 34 H 1.08999 * 110.61738 * 201.28333 * 5 4 2 35 35 H 1.09004 * 110.90622 * 278.82313 * 6 5 4 36 36 H 1.08996 * 110.91027 * 155.22202 * 6 5 4 37 37 H 0.96998 * 119.99610 * 0.02562 * 11 9 7 38 38 H 1.08996 * 109.47178 * 54.85968 * 12 11 9 39 39 H 1.09000 * 109.46987 * 294.85719 * 12 11 9 40 40 H 1.00904 * 111.00040 * 189.48268 * 14 13 12 41 41 H 1.09006 * 109.46794 * 55.11788 * 15 14 13 42 42 H 1.08993 * 109.47489 * 295.11397 * 15 14 13 43 43 H 0.97002 * 120.00170 * 0.02562 * 18 16 15 44 44 H 0.96996 * 120.00795 * 179.97438 * 22 21 19 45 45 H 1.09000 * 113.61779 * 203.75111 * 27 13 12 46 46 H 1.09000 * 113.61344 * 334.65168 * 27 13 12 47 47 H 1.09004 * 113.53337 * 270.81654 * 28 27 13 48 48 H 1.08994 * 113.67174 * 139.93626 * 28 27 13 49 49 H 1.09003 * 113.60798 * 25.35073 * 29 13 12 50 50 H 1.08998 * 113.61658 * 156.17108 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 1.1567 5 6 3.2379 -1.3653 0.7629 6 6 2.9195 -1.8906 -0.6601 7 6 2.0540 -0.7466 -1.2421 8 1 2.6600 -0.0828 -1.8588 9 6 0.9073 -1.3077 -2.0430 10 8 0.4411 -2.3904 -1.7579 11 7 0.3999 -0.6063 -3.0760 12 6 -0.7151 -1.1516 -3.8542 13 6 -1.1803 -0.1121 -4.8760 14 7 -0.1658 0.1765 -5.8984 15 6 0.0878 -1.0032 -6.7362 16 6 1.0408 -0.6368 -7.8446 17 8 1.4672 0.4957 -7.9281 18 7 1.4201 -1.5675 -8.7425 19 6 2.2875 -1.2343 -9.7505 20 1 2.6672 -0.2260 -9.8248 21 6 2.6830 -2.1954 -10.6728 22 7 2.2213 -3.4223 -10.5822 23 14 3.8710 -1.7432 -12.0417 24 1 5.1473 -1.2655 -11.4517 25 1 4.1314 -2.9371 -12.8855 26 1 3.2781 -0.6675 -12.8763 27 6 -2.5751 -0.4000 -5.4562 28 6 -3.1436 0.4218 -4.2850 29 6 -1.7890 1.1483 -4.2391 30 1 -0.3634 -1.0229 0.0988 31 1 -0.3633 0.5970 0.8365 32 1 -0.3633 0.4259 -0.9353 33 1 4.0685 -0.6600 0.7347 34 1 3.4599 -2.1911 1.4388 35 1 2.3539 -2.8212 -0.6136 36 1 3.8331 -2.0209 -1.2402 37 1 0.7731 0.2594 -3.3042 38 1 -1.5395 -1.3973 -3.1848 39 1 -0.3889 -2.0520 -4.3747 40 1 -0.4355 0.9690 -6.4619 41 1 -0.8514 -1.3527 -7.1654 42 1 0.5255 -1.7941 -6.1272 43 1 1.0794 -2.4733 -8.6755 44 1 2.4971 -4.0932 -11.2262 45 1 -2.7446 0.0553 -6.4319 46 1 -2.8515 -1.4539 -5.4260 47 1 -3.3502 -0.1734 -3.3955 48 1 -3.9758 1.0670 -4.5665 49 1 -1.4317 1.3424 -3.2277 50 1 -1.7419 2.0281 -4.8809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733726681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:23 Heat of formation + Delta-G solvation = -124.515531 kcal Electronic energy + Delta-G solvation = -30500.178375 eV Core-core repulsion = 26333.702285 eV Total energy + Delta-G solvation = -4166.476090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80361 -40.93000 -39.87550 -39.18589 -36.06102 -35.34644 -34.56266 -33.51156 -33.24871 -32.44028 -29.13050 -28.29750 -27.04794 -26.72504 -25.90071 -23.64440 -23.14600 -22.91872 -21.06965 -20.89160 -19.91895 -19.66602 -18.23148 -18.05215 -17.59671 -17.11186 -16.89325 -16.69578 -16.45760 -16.32968 -15.95767 -15.88690 -15.76203 -15.51196 -14.99979 -14.68965 -14.28631 -14.17972 -13.80190 -13.64729 -13.53414 -13.39124 -13.32303 -13.19725 -13.18189 -12.96550 -12.92420 -12.46520 -12.44533 -12.22281 -12.15622 -11.98217 -11.96760 -11.86173 -11.53813 -11.50581 -11.22608 -11.01529 -10.56890 -10.35865 -10.03745 -10.03343 -9.29542 -8.47704 -5.96902 1.38922 1.41024 1.51999 1.57405 2.03201 2.13448 2.28109 2.85712 2.88678 3.19487 3.39824 3.42958 3.55587 3.62599 3.65784 3.75661 3.87702 3.93684 4.08573 4.23438 4.27088 4.29387 4.35963 4.43767 4.47465 4.51344 4.55666 4.56266 4.62422 4.72307 4.81400 4.83935 4.85128 4.92303 4.97143 5.06814 5.09345 5.11442 5.17718 5.20960 5.38369 5.40211 5.47632 5.88163 5.90795 6.07966 6.39590 6.57264 6.58000 7.10594 7.24072 7.54240 8.08305 8.69487 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011401 B = 0.002730 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.322384 B =10252.733527 C =11928.124412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.091 3.909 3 H 0.103 0.897 4 O -0.395 6.395 5 C 0.049 3.951 6 C -0.145 4.145 7 C -0.145 4.145 8 H 0.127 0.873 9 C 0.527 3.473 10 O -0.581 6.581 11 N -0.705 5.705 12 C 0.154 3.846 13 C 0.079 3.921 14 N -0.656 5.656 15 C 0.068 3.932 16 C 0.440 3.560 17 O -0.619 6.619 18 N -0.574 5.574 19 C -0.334 4.334 20 H 0.081 0.919 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.270 1.270 27 C -0.169 4.169 28 C -0.128 4.128 29 C -0.119 4.119 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.415 0.585 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.352 0.648 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.394 0.606 44 H 0.277 0.723 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.138 6.655 19.767 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 H 0.121 0.879 4 O -0.314 6.314 5 C -0.027 4.027 6 C -0.183 4.183 7 C -0.166 4.166 8 H 0.145 0.855 9 C 0.314 3.686 10 O -0.461 6.461 11 N -0.356 5.356 12 C 0.029 3.971 13 C -0.013 4.013 14 N -0.289 5.289 15 C -0.064 4.064 16 C 0.227 3.773 17 O -0.506 6.506 18 N -0.210 5.210 19 C -0.463 4.463 20 H 0.099 0.901 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.816 3.184 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.195 1.195 27 C -0.209 4.209 28 C -0.166 4.166 29 C -0.157 4.157 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.252 0.748 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.172 0.828 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.228 0.772 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.106 0.894 48 H 0.100 0.900 49 H 0.101 0.899 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.717 6.349 20.387 22.105 hybrid contribution -0.110 -0.445 -1.892 1.947 sum -5.826 5.905 18.494 20.270 Atomic orbital electron populations 1.22097 0.93910 1.02324 1.03475 1.22712 0.95293 0.96047 0.82648 0.87950 1.88871 1.40942 1.68090 1.33530 1.23698 0.87350 0.97147 0.94493 1.23154 1.00132 0.97866 0.97186 1.22905 0.95876 0.99823 0.98024 0.85538 1.20506 0.83861 0.84284 0.79951 1.90676 1.62541 1.23043 1.69865 1.45836 1.35395 1.23430 1.30920 1.20957 0.89313 0.94838 0.91969 1.22639 0.88620 0.97343 0.92652 1.59969 1.46555 1.05603 1.16762 1.21423 0.97268 0.94871 0.92842 1.20786 0.85999 0.85530 0.84977 1.90485 1.60876 1.22235 1.76999 1.41947 1.41685 1.12012 1.25404 1.19645 1.22986 0.97606 1.06096 0.90064 1.26061 0.99740 0.94633 1.00879 1.69668 1.45289 1.02958 1.38347 0.84989 0.78138 0.77832 0.77409 1.19625 1.19665 1.19524 1.23641 0.96382 1.01531 0.99331 1.22752 0.97055 0.98734 0.98048 1.23047 0.95279 0.95684 1.01696 0.93695 0.90649 0.90029 0.89721 0.87901 0.91225 0.88285 0.74818 0.90197 0.93311 0.82786 0.91898 0.89262 0.77203 0.91311 0.89947 0.91081 0.89388 0.89992 0.89866 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.41 71.98 0.61 -2.29 16 2 C 0.09 1.57 4.05 30.97 0.13 1.70 16 3 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 4 O -0.39 -8.32 11.19 -148.98 -1.67 -9.99 16 5 C 0.05 0.78 7.72 72.66 0.56 1.34 16 6 C -0.15 -2.73 6.65 31.89 0.21 -2.52 16 7 C -0.14 -2.66 3.43 -10.55 -0.04 -2.69 16 8 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 9 C 0.53 12.63 4.76 87.66 0.42 13.04 16 10 O -0.58 -18.62 15.05 -3.04 -0.05 -18.67 16 11 N -0.70 -14.72 4.75 -463.05 -2.20 -16.92 16 12 C 0.15 3.40 4.86 86.38 0.42 3.82 16 13 C 0.08 1.60 0.63 4.05 0.00 1.60 16 14 N -0.66 -18.06 6.12 -471.53 -2.89 -20.95 16 15 C 0.07 2.27 5.75 85.56 0.49 2.76 16 16 C 0.44 20.28 7.81 87.66 0.68 20.97 16 17 O -0.62 -32.74 15.67 -3.07 -0.05 -32.79 16 18 N -0.57 -29.20 5.29 -306.99 -1.62 -30.82 16 19 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 22 N -0.92 -49.90 13.05 21.66 0.28 -49.62 16 23 Si 0.99 42.57 29.55 68.60 2.03 44.60 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 27 C -0.17 -3.09 6.47 31.18 0.20 -2.88 16 28 C -0.13 -1.81 7.74 31.18 0.24 -1.57 16 29 C -0.12 -1.83 7.26 31.12 0.23 -1.60 16 30 H 0.04 1.07 7.18 -2.39 -0.02 1.05 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.27 6.96 -2.38 -0.02 1.25 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.71 6.91 -2.38 -0.02 1.69 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.41 7.61 8.44 -92.71 -0.78 6.83 16 38 H 0.08 1.70 7.31 -2.39 -0.02 1.68 16 39 H 0.05 1.30 6.74 -2.39 -0.02 1.28 16 40 H 0.35 10.32 8.05 -89.69 -0.72 9.59 16 41 H 0.06 1.90 7.35 -2.38 -0.02 1.88 16 42 H 0.09 2.92 6.86 -2.39 -0.02 2.91 16 43 H 0.39 19.38 7.90 -92.71 -0.73 18.65 16 44 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 45 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 47 H 0.09 1.16 7.61 -2.38 -0.02 1.14 16 48 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.08 1.11 7.93 -2.39 -0.02 1.10 16 50 H 0.09 1.40 8.00 -2.39 -0.02 1.38 16 Total: -1.00 -70.98 398.67 -1.98 -72.96 By element: Atomic # 1 Polarization: 49.98 SS G_CDS: -1.26 Total: 48.73 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 5.43 Total: 13.48 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -6.43 Total: -118.32 kcal Atomic # 8 Polarization: -59.68 SS G_CDS: -1.76 Total: -61.44 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -70.98 -1.98 -72.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733726681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.557 kcal (2) G-P(sol) polarization free energy of solvation -70.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds