Wall clock time and date at job start Tue Mar 31 2020 23:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 115.56229 * 2 1 4 4 C 1.53000 * 117.49535 * 145.69050 * 2 1 3 5 5 C 1.53000 * 60.00090 * 107.48835 * 4 2 1 6 6 H 1.08994 * 117.50178 * 252.48672 * 5 4 2 7 7 C 1.50705 * 117.49944 * 107.48588 * 5 4 2 8 8 O 1.21287 * 119.99741 * 291.39218 * 7 5 4 9 9 N 1.34774 * 120.00154 * 111.39081 * 7 5 4 10 10 C 1.46497 * 120.00186 * 184.95762 * 9 7 5 11 11 C 1.52999 * 109.52087 * 57.34132 * 10 9 7 12 12 O 1.42897 * 109.47394 * 57.55143 * 11 10 9 13 13 C 1.53124 * 109.52432 * 297.21297 * 10 9 7 14 14 C 1.53035 * 109.27857 * 297.75449 * 13 10 9 15 15 N 1.46849 * 109.51892 * 300.81348 * 14 13 10 16 16 C 1.46905 * 110.99834 * 185.84299 * 15 14 13 17 17 C 1.50702 * 109.46786 * 170.00422 * 16 15 14 18 18 O 1.21286 * 120.00249 * 359.72565 * 17 16 15 19 19 N 1.34772 * 119.99590 * 179.97438 * 17 16 15 20 20 C 1.37105 * 120.00147 * 179.72408 * 19 17 16 21 21 H 1.07998 * 119.99444 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00224 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99893 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99978 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47080 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47388 * 119.99672 * 24 22 20 27 27 H 1.48497 * 109.46841 * 239.99809 * 24 22 20 28 28 C 1.46850 * 111.19679 * 61.74509 * 15 14 13 29 29 C 1.53035 * 109.52609 * 298.25949 * 28 15 14 30 30 H 1.09002 * 109.46834 * 205.68446 * 1 2 3 31 31 H 1.08995 * 109.47019 * 325.69291 * 1 2 3 32 32 H 1.08998 * 109.46635 * 85.68707 * 1 2 3 33 33 H 1.09000 * 117.50390 * 0.02562 * 4 2 1 34 34 H 1.09001 * 117.51792 * 214.96670 * 4 2 1 35 35 H 0.97001 * 119.99995 * 4.96206 * 9 7 5 36 36 H 1.09006 * 109.46949 * 177.55645 * 11 10 9 37 37 H 1.09001 * 109.47161 * 297.55143 * 11 10 9 38 38 H 0.96697 * 114.00519 * 179.97438 * 12 11 10 39 39 H 1.08995 * 109.50629 * 177.80327 * 13 10 9 40 40 H 1.09007 * 109.50079 * 57.69061 * 13 10 9 41 41 H 1.09001 * 109.45953 * 180.80278 * 14 13 10 42 42 H 1.08991 * 109.45833 * 60.82580 * 14 13 10 43 43 H 1.08989 * 109.47148 * 50.00162 * 16 15 14 44 44 H 1.09006 * 109.46780 * 289.99901 * 16 15 14 45 45 H 0.96998 * 120.00243 * 359.72518 * 19 17 16 46 46 H 0.97001 * 119.99757 * 180.02562 * 23 22 20 47 47 H 1.09009 * 109.45918 * 58.27308 * 28 15 14 48 48 H 1.09005 * 109.46133 * 178.23578 * 28 15 14 49 49 H 1.09005 * 109.49957 * 299.23617 * 29 28 15 50 50 H 1.08997 * 109.50399 * 179.12247 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2365 -1.1210 -0.7650 6 1 1.6116 -1.8587 -1.2683 7 6 3.5294 -0.7811 -1.4608 8 8 3.9720 0.3465 -1.4010 9 7 4.1937 -1.7302 -2.1496 10 6 5.5029 -1.4296 -2.7343 11 6 6.4593 -0.9642 -1.6345 12 8 6.5563 -1.9745 -0.6286 13 6 5.3532 -0.3246 -3.7837 14 6 4.4426 -0.8178 -4.9105 15 7 5.0239 -2.0208 -5.5200 16 6 4.2490 -2.4426 -6.6946 17 6 5.0022 -3.5190 -7.4330 18 8 6.0808 -3.8939 -7.0241 19 7 4.4796 -4.0614 -8.5506 20 6 5.1673 -5.0366 -9.2257 21 1 6.1281 -5.3699 -8.8620 22 6 4.6287 -5.5955 -10.3782 23 7 3.4599 -5.1896 -10.8209 24 14 5.5654 -6.9247 -11.2974 25 1 6.8460 -7.2015 -10.5982 26 1 4.7485 -8.1638 -11.3440 27 1 5.8469 -6.4650 -12.6811 28 6 5.1336 -3.1112 -4.5425 29 6 6.0646 -2.6864 -3.4046 30 1 -0.3633 -0.9262 0.4454 31 1 -0.3633 0.8488 0.5792 32 1 -0.3632 0.0773 -1.0248 33 1 1.6112 -1.8588 1.2679 34 1 3.1717 -0.8757 1.2683 35 1 3.8050 -2.6122 -2.2582 36 1 7.4449 -0.7824 -2.0632 37 1 6.0812 -0.0438 -1.1897 38 1 7.1478 -1.7470 0.1017 39 1 6.3328 -0.0740 -4.1906 40 1 4.9137 0.5593 -3.3212 41 1 4.3455 -0.0385 -5.6663 42 1 3.4592 -1.0552 -4.5050 43 1 4.0955 -1.5888 -7.3543 44 1 3.2830 -2.8311 -6.3722 45 1 3.6169 -3.7618 -8.8775 46 1 3.0837 -5.5800 -11.6253 47 1 4.1466 -3.3377 -4.1389 48 1 5.5381 -3.9977 -5.0312 49 1 7.0554 -2.4731 -3.8057 50 1 6.1334 -3.4901 -2.6715 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733914793.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:12 Heat of formation + Delta-G solvation = -91.515578 kcal Electronic energy + Delta-G solvation = -30737.792141 eV Core-core repulsion = 26572.747036 eV Total energy + Delta-G solvation = -4165.045104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.86264 -39.10877 -38.09302 -36.73823 -36.50349 -34.57748 -33.80143 -31.87165 -31.21306 -30.73546 -29.03286 -28.25051 -25.76186 -24.55681 -23.95355 -23.17211 -21.71372 -21.13300 -20.18554 -19.22680 -19.10403 -17.85420 -17.69786 -17.38671 -16.09170 -15.81692 -15.64706 -15.27990 -15.03015 -14.82615 -14.61109 -14.31433 -14.04669 -13.92838 -13.72934 -13.61225 -13.54140 -13.14278 -13.01118 -12.91829 -12.42713 -12.31522 -12.11181 -11.92387 -11.72415 -11.68373 -11.47870 -11.25843 -11.06996 -10.98217 -10.65475 -10.59795 -10.41254 -10.36789 -10.32822 -10.22233 -10.17876 -9.53494 -9.43387 -9.07492 -8.40546 -7.96791 -7.80649 -6.41485 -3.82125 2.39381 2.98523 3.16227 3.26826 3.33914 3.57096 3.90910 4.01644 4.04448 4.25590 4.37294 4.47833 4.52357 4.72702 4.80490 4.94829 4.98122 5.00683 5.18135 5.24862 5.31352 5.33820 5.38981 5.40429 5.43975 5.46705 5.48230 5.59678 5.64164 5.70404 5.73042 5.79497 5.89709 5.90072 5.96753 6.01193 6.07053 6.19654 6.28734 6.31963 6.47940 6.55183 7.31983 7.44416 7.47170 7.49796 7.55782 8.07348 8.16696 8.62389 9.18740 9.55317 10.07047 10.76405 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.002427 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.062899 B =11536.195435 C =12388.207726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.116 0.884 4 C -0.146 4.146 5 C -0.192 4.192 6 H 0.120 0.880 7 C 0.550 3.450 8 O -0.545 6.545 9 N -0.705 5.705 10 C 0.183 3.817 11 C 0.064 3.936 12 O -0.567 6.567 13 C -0.124 4.124 14 C 0.061 3.939 15 N -0.514 5.514 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.053 3.947 29 C -0.110 4.110 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.400 0.600 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.375 0.625 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.028 0.972 43 H 0.088 0.912 44 H 0.045 0.955 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.018 0.982 48 H 0.107 0.893 49 H 0.087 0.913 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.968 9.649 21.684 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.134 0.866 4 C -0.184 4.184 5 C -0.213 4.213 6 H 0.138 0.862 7 C 0.336 3.664 8 O -0.423 6.423 9 N -0.355 5.355 10 C 0.097 3.903 11 C -0.014 4.014 12 O -0.372 6.372 13 C -0.163 4.163 14 C -0.067 4.067 15 N -0.238 5.238 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.075 4.075 29 C -0.148 4.148 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.235 0.765 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.221 0.779 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.036 0.964 48 H 0.125 0.875 49 H 0.106 0.894 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.951 9.932 21.264 23.654 hybrid contribution -0.786 -0.887 -0.344 1.234 sum -3.737 9.045 20.920 23.096 Atomic orbital electron populations 1.21406 0.92309 1.02155 1.02257 1.22361 0.95147 0.95034 1.01548 0.86558 1.23061 1.02983 1.01443 0.90892 1.22319 0.98012 1.05163 0.95832 0.86213 1.19538 0.84428 0.84586 0.77804 1.90603 1.68777 1.21006 1.61959 1.45933 1.19916 1.15245 1.54416 1.20471 0.81799 0.96687 0.91312 1.22622 0.98073 0.91324 0.89402 1.86457 1.70308 1.44733 1.35665 1.21952 1.01720 0.98079 0.94514 1.22001 0.95367 0.93181 0.96118 1.61537 1.50958 1.04767 1.06574 1.21836 0.94701 0.98909 0.93052 1.19747 0.87870 0.85805 0.83577 1.90479 1.22485 1.64782 1.68338 1.41886 1.20657 1.35107 1.22554 1.19742 1.03836 1.13476 1.05593 0.87868 1.25260 0.96281 0.99106 0.97374 1.69623 1.17098 1.43492 1.24176 0.85810 0.79502 0.80008 0.79091 1.19225 1.20801 1.20768 1.22262 0.96901 0.96066 0.92227 1.21793 1.00586 0.95827 0.96579 0.92381 0.91728 0.91905 0.87951 0.88374 0.76492 0.92968 0.91605 0.77933 0.90158 0.89371 0.90748 0.95367 0.89386 0.93687 0.77529 0.91955 0.96390 0.87508 0.89418 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.19 37.16 0.38 -0.43 16 2 C -0.12 -1.03 5.92 -90.61 -0.54 -1.57 16 3 H 0.12 1.15 7.67 -51.93 -0.40 0.75 16 4 C -0.15 -1.14 9.88 -26.73 -0.26 -1.41 16 5 C -0.19 -1.75 5.91 -91.77 -0.54 -2.30 16 6 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 7 C 0.55 6.43 7.03 -10.98 -0.08 6.35 16 8 O -0.55 -7.71 12.51 5.55 0.07 -7.64 16 9 N -0.70 -7.93 4.01 -47.49 -0.19 -8.12 16 10 C 0.18 2.23 0.44 -131.70 -0.06 2.17 16 11 C 0.06 0.72 5.65 37.16 0.21 0.93 16 12 O -0.57 -6.02 12.97 -35.23 -0.46 -6.47 16 13 C -0.12 -1.59 4.75 -26.65 -0.13 -1.72 16 14 C 0.06 0.85 5.31 -3.83 -0.02 0.83 16 15 N -0.51 -8.50 4.40 -236.11 -1.04 -9.54 16 16 C 0.05 0.83 5.45 -4.97 -0.03 0.80 16 17 C 0.44 10.37 7.45 -10.99 -0.08 10.29 16 18 O -0.58 -15.22 13.91 5.55 0.08 -15.15 16 19 N -0.57 -14.23 5.29 -10.96 -0.06 -14.29 16 20 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 24 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 C 0.05 0.84 4.94 -3.83 -0.02 0.82 16 29 C -0.11 -1.48 4.78 -26.65 -0.13 -1.61 16 30 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.63 8.05 -51.93 -0.42 0.21 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 4.14 7.40 -40.82 -0.30 3.84 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.81 6.23 -51.93 -0.32 0.49 16 38 H 0.37 2.43 9.12 45.56 0.42 2.85 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 1.19 6.16 -51.93 -0.32 0.87 16 41 H 0.07 0.99 8.02 -51.93 -0.42 0.57 16 42 H 0.03 0.38 7.68 -51.93 -0.40 -0.02 16 43 H 0.09 1.45 7.99 -51.94 -0.41 1.04 16 44 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 45 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.02 0.26 6.96 -51.92 -0.36 -0.10 16 48 H 0.11 2.08 5.79 -51.93 -0.30 1.77 16 49 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 50 H 0.08 1.01 7.83 -51.93 -0.41 0.60 16 LS Contribution 395.18 15.07 5.96 5.96 Total: -1.00 -32.55 395.18 -8.74 -41.29 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -7.27 Total: 16.52 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -1.53 Total: 5.27 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.56 Total: -55.75 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.31 Total: -29.26 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.55 -8.74 -41.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733914793.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.227 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds