Wall clock time and date at job start Tue Mar 31 2020 23:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 115.56229 * 2 1 4 4 C 1.53000 * 117.49535 * 145.69050 * 2 1 3 5 5 C 1.53000 * 60.00090 * 107.48835 * 4 2 1 6 6 H 1.08994 * 117.50178 * 252.48672 * 5 4 2 7 7 C 1.50705 * 117.49944 * 107.48588 * 5 4 2 8 8 O 1.21287 * 119.99741 * 291.39218 * 7 5 4 9 9 N 1.34774 * 120.00154 * 111.39081 * 7 5 4 10 10 C 1.46497 * 120.00186 * 184.95762 * 9 7 5 11 11 C 1.52999 * 109.52087 * 57.34132 * 10 9 7 12 12 O 1.42897 * 109.47394 * 57.55143 * 11 10 9 13 13 C 1.53124 * 109.52432 * 297.21297 * 10 9 7 14 14 C 1.53035 * 109.27857 * 297.75449 * 13 10 9 15 15 N 1.46849 * 109.51892 * 300.81348 * 14 13 10 16 16 C 1.46905 * 110.99834 * 185.84299 * 15 14 13 17 17 C 1.50702 * 109.46786 * 170.00422 * 16 15 14 18 18 O 1.21286 * 120.00249 * 359.72565 * 17 16 15 19 19 N 1.34772 * 119.99590 * 179.97438 * 17 16 15 20 20 C 1.37105 * 120.00147 * 179.72408 * 19 17 16 21 21 H 1.07998 * 119.99444 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00224 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99893 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99978 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47080 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47388 * 119.99672 * 24 22 20 27 27 H 1.48497 * 109.46841 * 239.99809 * 24 22 20 28 28 C 1.46850 * 111.19679 * 61.74509 * 15 14 13 29 29 C 1.53035 * 109.52609 * 298.25949 * 28 15 14 30 30 H 1.09002 * 109.46834 * 205.68446 * 1 2 3 31 31 H 1.08995 * 109.47019 * 325.69291 * 1 2 3 32 32 H 1.08998 * 109.46635 * 85.68707 * 1 2 3 33 33 H 1.09000 * 117.50390 * 0.02562 * 4 2 1 34 34 H 1.09001 * 117.51792 * 214.96670 * 4 2 1 35 35 H 0.97001 * 119.99995 * 4.96206 * 9 7 5 36 36 H 1.09006 * 109.46949 * 177.55645 * 11 10 9 37 37 H 1.09001 * 109.47161 * 297.55143 * 11 10 9 38 38 H 0.96697 * 114.00519 * 179.97438 * 12 11 10 39 39 H 1.08995 * 109.50629 * 177.80327 * 13 10 9 40 40 H 1.09007 * 109.50079 * 57.69061 * 13 10 9 41 41 H 1.09001 * 109.45953 * 180.80278 * 14 13 10 42 42 H 1.08991 * 109.45833 * 60.82580 * 14 13 10 43 43 H 1.08989 * 109.47148 * 50.00162 * 16 15 14 44 44 H 1.09006 * 109.46780 * 289.99901 * 16 15 14 45 45 H 0.96998 * 120.00243 * 359.72518 * 19 17 16 46 46 H 0.97001 * 119.99757 * 180.02562 * 23 22 20 47 47 H 1.09009 * 109.45918 * 58.27308 * 28 15 14 48 48 H 1.09005 * 109.46133 * 178.23578 * 28 15 14 49 49 H 1.09005 * 109.49957 * 299.23617 * 29 28 15 50 50 H 1.08997 * 109.50399 * 179.12247 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2365 -1.1210 -0.7650 6 1 1.6116 -1.8587 -1.2683 7 6 3.5294 -0.7811 -1.4608 8 8 3.9720 0.3465 -1.4010 9 7 4.1937 -1.7302 -2.1496 10 6 5.5029 -1.4296 -2.7343 11 6 6.4593 -0.9642 -1.6345 12 8 6.5563 -1.9745 -0.6286 13 6 5.3532 -0.3246 -3.7837 14 6 4.4426 -0.8178 -4.9105 15 7 5.0239 -2.0208 -5.5200 16 6 4.2490 -2.4426 -6.6946 17 6 5.0022 -3.5190 -7.4330 18 8 6.0808 -3.8939 -7.0241 19 7 4.4796 -4.0614 -8.5506 20 6 5.1673 -5.0366 -9.2257 21 1 6.1281 -5.3699 -8.8620 22 6 4.6287 -5.5955 -10.3782 23 7 3.4599 -5.1896 -10.8209 24 14 5.5654 -6.9247 -11.2974 25 1 6.8460 -7.2015 -10.5982 26 1 4.7485 -8.1638 -11.3440 27 1 5.8469 -6.4650 -12.6811 28 6 5.1336 -3.1112 -4.5425 29 6 6.0646 -2.6864 -3.4046 30 1 -0.3633 -0.9262 0.4454 31 1 -0.3633 0.8488 0.5792 32 1 -0.3632 0.0773 -1.0248 33 1 1.6112 -1.8588 1.2679 34 1 3.1717 -0.8757 1.2683 35 1 3.8050 -2.6122 -2.2582 36 1 7.4449 -0.7824 -2.0632 37 1 6.0812 -0.0438 -1.1897 38 1 7.1478 -1.7470 0.1017 39 1 6.3328 -0.0740 -4.1906 40 1 4.9137 0.5593 -3.3212 41 1 4.3455 -0.0385 -5.6663 42 1 3.4592 -1.0552 -4.5050 43 1 4.0955 -1.5888 -7.3543 44 1 3.2830 -2.8311 -6.3722 45 1 3.6169 -3.7618 -8.8775 46 1 3.0837 -5.5800 -11.6253 47 1 4.1466 -3.3377 -4.1389 48 1 5.5381 -3.9977 -5.0312 49 1 7.0554 -2.4731 -3.8057 50 1 6.1334 -3.4901 -2.6715 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733914793.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:11 Heat of formation + Delta-G solvation = -117.023347 kcal Electronic energy + Delta-G solvation = -30738.898241 eV Core-core repulsion = 26572.747036 eV Total energy + Delta-G solvation = -4166.151204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.84866 -40.42916 -39.46317 -37.79588 -37.34761 -36.01370 -35.44390 -33.30601 -32.84247 -31.90131 -29.81950 -29.34312 -27.31954 -25.66534 -25.25378 -24.32707 -22.75077 -21.92875 -21.04157 -20.95658 -20.16104 -19.85315 -18.53412 -18.28666 -17.69336 -16.98867 -16.75486 -16.53439 -16.35281 -16.05461 -15.94060 -15.62858 -15.31200 -15.20763 -14.99247 -14.76824 -14.36123 -14.13817 -14.02822 -13.94610 -13.67743 -13.50347 -13.41175 -13.00330 -12.90694 -12.89733 -12.87292 -12.41856 -12.38931 -12.28561 -12.20717 -12.10853 -11.72066 -11.62796 -11.39408 -11.24933 -11.14718 -10.93293 -10.45328 -10.21872 -10.01980 -9.97501 -9.17205 -8.45465 -5.93635 1.36844 1.42116 1.54459 1.56079 2.06953 2.12033 2.28888 2.75279 2.89060 3.19134 3.21636 3.39221 3.57818 3.73364 3.79997 3.81930 3.90806 4.09155 4.19649 4.20941 4.27911 4.31001 4.42942 4.45960 4.46772 4.49977 4.53865 4.57493 4.67592 4.75486 4.82457 4.87928 4.91271 4.94138 4.95647 5.06092 5.07564 5.13480 5.21627 5.23046 5.42572 5.42708 5.58383 5.90234 6.10023 6.22791 6.59904 6.62281 6.83711 7.14798 7.28028 7.58450 8.14162 8.72293 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.002427 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.062899 B =11536.195435 C =12388.207726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.125 4.125 3 H 0.097 0.903 4 C -0.135 4.135 5 C -0.200 4.200 6 H 0.136 0.864 7 C 0.546 3.454 8 O -0.573 6.573 9 N -0.701 5.701 10 C 0.186 3.814 11 C 0.072 3.928 12 O -0.577 6.577 13 C -0.118 4.118 14 C 0.066 3.934 15 N -0.529 5.529 16 C 0.058 3.942 17 C 0.444 3.556 18 O -0.611 6.611 19 N -0.576 5.576 20 C -0.328 4.328 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.057 3.943 29 C -0.098 4.098 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.406 0.594 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.393 0.607 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.035 0.965 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.035 0.965 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 9.616 22.604 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.144 4.144 3 H 0.115 0.885 4 C -0.172 4.172 5 C -0.221 4.221 6 H 0.154 0.846 7 C 0.334 3.666 8 O -0.453 6.453 9 N -0.351 5.351 10 C 0.099 3.901 11 C -0.007 4.007 12 O -0.384 6.384 13 C -0.157 4.157 14 C -0.061 4.061 15 N -0.254 5.254 16 C -0.073 4.073 17 C 0.231 3.769 18 O -0.497 6.497 19 N -0.213 5.213 20 C -0.458 4.458 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.070 4.070 29 C -0.136 4.136 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.107 0.893 35 H 0.241 0.759 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.242 0.758 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.125 0.875 44 H 0.083 0.917 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.053 0.947 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.102 9.907 22.205 24.659 hybrid contribution -0.400 -0.839 -0.557 1.084 sum -4.502 9.067 21.648 23.898 Atomic orbital electron populations 1.21402 0.90719 1.03190 1.02424 1.22378 0.96290 0.94135 1.01568 0.88493 1.23132 1.02787 1.01399 0.89892 1.22368 0.97029 1.06126 0.96610 0.84577 1.19975 0.85043 0.84099 0.77438 1.90593 1.69683 1.22137 1.62919 1.45888 1.19510 1.15513 1.54191 1.20365 0.82603 0.95552 0.91533 1.22467 0.98082 0.90909 0.89263 1.86406 1.71120 1.44623 1.36297 1.21880 1.01367 0.98107 0.94332 1.22018 0.95653 0.91990 0.96471 1.61498 1.51513 1.05741 1.06669 1.21711 0.94568 0.97592 0.93477 1.20707 0.87543 0.85864 0.82783 1.90462 1.24257 1.65934 1.69017 1.41947 1.20823 1.35283 1.23269 1.19677 1.03756 1.15332 1.07008 0.90293 1.26020 0.97074 1.00739 0.97549 1.69681 1.17845 1.44223 1.24580 0.84889 0.78052 0.77653 0.77866 1.19785 1.19621 1.19747 1.22122 0.97988 0.94561 0.92367 1.21638 0.99401 0.96676 0.95856 0.91086 0.91030 0.92109 0.85719 0.89281 0.75859 0.92207 0.92568 0.75814 0.90378 0.89659 0.89953 0.94651 0.87477 0.91667 0.77117 0.91383 0.94690 0.91469 0.90757 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 10.19 71.98 0.73 -0.58 16 2 C -0.12 -1.92 5.92 -10.79 -0.06 -1.98 16 3 H 0.10 1.88 7.67 -2.39 -0.02 1.86 16 4 C -0.13 -1.83 9.88 30.59 0.30 -1.53 16 5 C -0.20 -3.29 5.91 -11.54 -0.07 -3.36 16 6 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 7 C 0.55 12.10 7.03 87.66 0.62 12.71 16 8 O -0.57 -15.85 12.51 -3.05 -0.04 -15.89 16 9 N -0.70 -14.75 4.01 -422.56 -1.69 -16.44 16 10 C 0.19 4.32 0.44 3.68 0.00 4.33 16 11 C 0.07 1.54 5.65 71.98 0.41 1.94 16 12 O -0.58 -11.41 12.97 -148.98 -1.93 -13.34 16 13 C -0.12 -2.92 4.75 30.65 0.15 -2.77 16 14 C 0.07 1.72 5.31 86.32 0.46 2.18 16 15 N -0.53 -17.08 4.40 -900.91 -3.96 -21.04 16 16 C 0.06 2.01 5.45 85.56 0.47 2.47 16 17 C 0.44 20.97 7.45 87.66 0.65 21.62 16 18 O -0.61 -33.21 13.91 -3.05 -0.04 -33.25 16 19 N -0.58 -29.45 5.29 -306.99 -1.62 -31.07 16 20 C -0.33 -18.57 9.68 84.04 0.81 -17.75 16 21 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 23 N -0.92 -49.80 13.05 21.66 0.28 -49.52 16 24 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 C 0.06 1.79 4.94 86.32 0.43 2.22 16 29 C -0.10 -2.59 4.78 30.64 0.15 -2.44 16 30 H 0.07 0.60 7.90 -2.39 -0.02 0.58 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.12 1.14 8.05 -2.39 -0.02 1.12 16 34 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 35 H 0.41 7.65 7.40 -92.71 -0.69 6.96 16 36 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.06 1.34 6.23 -2.39 -0.01 1.33 16 38 H 0.39 4.47 9.12 -74.06 -0.68 3.80 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.08 2.22 6.16 -2.38 -0.01 2.20 16 41 H 0.08 2.02 8.02 -2.39 -0.02 2.00 16 42 H 0.04 0.88 7.68 -2.39 -0.02 0.86 16 43 H 0.11 3.34 7.99 -2.39 -0.02 3.33 16 44 H 0.07 2.03 8.12 -2.38 -0.02 2.01 16 45 H 0.40 19.28 7.90 -92.71 -0.73 18.54 16 46 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 47 H 0.04 0.96 6.96 -2.38 -0.02 0.94 16 48 H 0.07 2.68 5.79 -2.38 -0.01 2.66 16 49 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 50 H 0.08 2.10 7.83 -2.39 -0.02 2.08 16 Total: -1.00 -70.66 395.18 -2.58 -73.25 By element: Atomic # 1 Polarization: 46.65 SS G_CDS: -1.11 Total: 45.54 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 5.51 Total: 16.76 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -6.99 Total: -118.08 kcal Atomic # 8 Polarization: -60.47 SS G_CDS: -2.01 Total: -62.48 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -70.66 -2.58 -73.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733914793.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.776 kcal (2) G-P(sol) polarization free energy of solvation -70.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds