Wall clock time and date at job start Tue Mar 31 2020 23:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 115.55096 * 2 1 4 4 C 1.53078 * 117.53150 * 145.71954 * 2 1 3 5 5 C 1.52998 * 59.98429 * 107.46848 * 4 2 1 6 6 H 1.08997 * 117.50364 * 107.50470 * 5 4 2 7 7 C 1.50705 * 117.49602 * 252.50044 * 5 4 2 8 8 O 1.21280 * 120.00202 * 68.74610 * 7 5 4 9 9 N 1.34774 * 119.99876 * 248.74989 * 7 5 4 10 10 C 1.46499 * 120.00222 * 185.11997 * 9 7 5 11 11 C 1.53004 * 109.52193 * 57.46122 * 10 9 7 12 12 O 1.42900 * 109.46847 * 54.58934 * 11 10 9 13 13 C 1.53123 * 109.52448 * 177.58883 * 10 9 7 14 14 C 1.53039 * 109.27480 * 62.37922 * 13 10 9 15 15 N 1.46849 * 109.57557 * 59.08194 * 14 13 10 16 16 C 1.46896 * 110.99765 * 174.19531 * 15 14 13 17 17 C 1.50699 * 109.47366 * 294.20641 * 16 15 14 18 18 O 1.21299 * 119.99846 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00668 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00049 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00193 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99639 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00140 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00063 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46739 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47213 * 119.99770 * 24 22 20 27 27 H 1.48500 * 109.47222 * 239.99871 * 24 22 20 28 28 C 1.46851 * 111.19723 * 298.28973 * 15 14 13 29 29 C 1.53036 * 109.52403 * 61.74330 * 28 15 14 30 30 H 1.09001 * 109.47108 * 205.67366 * 1 2 3 31 31 H 1.09005 * 109.47143 * 325.66719 * 1 2 3 32 32 H 1.08996 * 109.47515 * 85.66791 * 1 2 3 33 33 H 1.09001 * 117.51378 * 359.97438 * 4 2 1 34 34 H 1.09004 * 117.48972 * 214.95573 * 4 2 1 35 35 H 0.97006 * 120.00198 * 5.11280 * 9 7 5 36 36 H 1.09002 * 109.47079 * 294.58910 * 11 10 9 37 37 H 1.09004 * 109.47141 * 174.58749 * 11 10 9 38 38 H 0.96699 * 113.99741 * 180.02562 * 12 11 10 39 39 H 1.09003 * 109.49986 * 182.25340 * 13 10 9 40 40 H 1.08999 * 109.50025 * 302.37354 * 13 10 9 41 41 H 1.09001 * 109.41236 * 299.06867 * 14 13 10 42 42 H 1.08991 * 109.45354 * 179.12751 * 14 13 10 43 43 H 1.09000 * 109.47728 * 54.20818 * 16 15 14 44 44 H 1.09009 * 109.47200 * 174.20973 * 16 15 14 45 45 H 0.97004 * 119.99480 * 0.02562 * 19 17 16 46 46 H 0.97003 * 119.99807 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.46420 * 301.72645 * 28 15 14 48 48 H 1.09004 * 109.44821 * 181.75281 * 28 15 14 49 49 H 1.08998 * 109.50190 * 180.87543 * 29 28 15 50 50 H 1.09001 * 109.49916 * 60.76100 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2376 -1.1216 0.7646 5 6 2.2364 -1.1207 -0.7654 6 1 3.1711 -0.8746 -1.2693 7 6 1.3719 -2.1404 -1.4612 8 8 0.1637 -2.0524 -1.4025 9 7 1.9414 -3.1501 -2.1485 10 6 1.1058 -4.0759 -2.9173 11 6 0.2797 -3.2913 -3.9385 12 8 1.1504 -2.4952 -4.7448 13 6 1.9973 -5.0847 -3.6468 14 6 2.7744 -5.9089 -2.6178 15 7 1.8323 -6.6081 -1.7346 16 6 2.5406 -7.5160 -0.8226 17 6 3.1853 -8.6230 -1.6163 18 8 3.0668 -8.6525 -2.8231 19 7 3.8936 -9.5805 -0.9853 20 6 4.4805 -10.5872 -1.7075 21 1 4.3750 -10.6133 -2.7819 22 6 5.2103 -11.5745 -1.0568 23 7 5.3383 -11.5430 0.2507 24 14 6.0094 -12.9467 -2.0406 25 1 5.7174 -12.7556 -3.4841 26 1 7.4784 -12.9200 -1.8246 27 1 5.4673 -14.2555 -1.5954 28 6 0.9987 -5.6571 -0.9881 29 6 0.1674 -4.8265 -1.9683 30 1 -0.3633 -0.9262 0.4452 31 1 -0.3634 0.8487 0.5796 32 1 -0.3634 0.0776 -1.0247 33 1 1.6131 -1.8596 1.2681 34 1 3.1729 -0.8756 1.2673 35 1 2.9047 -3.2639 -2.1344 36 1 -0.4246 -2.6439 -3.4159 37 1 -0.2688 -3.9869 -4.5737 38 1 0.6938 -1.9693 -5.4156 39 1 1.3777 -5.7481 -4.2502 40 1 2.6967 -4.5526 -4.2915 41 1 3.4049 -5.2465 -2.0246 42 1 3.3984 -6.6385 -3.1336 43 1 3.3081 -6.9622 -0.2819 44 1 1.8324 -7.9431 -0.1124 45 1 3.9881 -9.5571 -0.0201 46 1 5.8481 -12.2320 0.7049 47 1 1.6375 -4.9959 -0.4026 48 1 0.3332 -6.2042 -0.3203 49 1 -0.4396 -4.1102 -1.4147 50 1 -0.4818 -5.4858 -2.5445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733916754.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:18 Heat of formation + Delta-G solvation = -86.943184 kcal Electronic energy + Delta-G solvation = -31026.882510 eV Core-core repulsion = 26862.035679 eV Total energy + Delta-G solvation = -4164.846830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.89452 -39.17168 -38.10451 -36.64255 -36.37679 -34.55992 -33.80264 -31.89258 -31.21323 -30.73950 -28.74962 -28.22119 -25.75649 -24.61759 -23.94512 -23.17920 -21.72832 -21.24212 -20.07368 -19.22929 -19.11088 -17.85163 -17.40841 -17.32685 -16.16522 -15.84674 -15.57503 -15.47328 -15.00200 -14.72462 -14.60772 -14.44376 -13.94763 -13.89295 -13.72116 -13.58222 -13.29886 -13.08716 -12.90171 -12.73994 -12.46020 -12.36387 -12.09459 -11.90202 -11.71979 -11.66764 -11.47885 -11.24930 -11.06665 -10.98234 -10.61042 -10.50967 -10.39044 -10.33664 -10.29461 -10.21905 -10.10464 -9.48526 -9.31735 -9.04352 -8.40540 -7.96912 -7.80583 -6.41639 -3.82275 2.42300 3.03287 3.16082 3.26700 3.33781 3.57528 3.90774 4.01614 4.05613 4.25566 4.36965 4.49995 4.59505 4.76622 4.78922 4.95933 4.99052 5.12243 5.18290 5.24884 5.32954 5.37726 5.43825 5.47174 5.49244 5.55859 5.60000 5.66090 5.70195 5.78733 5.79784 5.89123 5.89655 5.90891 5.97242 6.06693 6.19434 6.28538 6.30259 6.32925 6.48185 6.57738 7.32001 7.44952 7.48022 7.51863 7.55641 8.07176 8.20862 8.62246 9.18590 9.55144 10.06890 10.76234 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018817 B = 0.002483 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.650446 B =11274.661994 C =12069.680258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.119 4.119 3 H 0.108 0.892 4 C -0.153 4.153 5 C -0.194 4.194 6 H 0.120 0.880 7 C 0.550 3.450 8 O -0.539 6.539 9 N -0.705 5.705 10 C 0.184 3.816 11 C 0.065 3.935 12 O -0.567 6.567 13 C -0.111 4.111 14 C 0.053 3.947 15 N -0.513 5.513 16 C 0.047 3.953 17 C 0.444 3.556 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.062 3.938 29 C -0.124 4.124 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.399 0.601 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.375 0.625 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.018 0.982 42 H 0.107 0.893 43 H 0.045 0.955 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.028 0.972 48 H 0.073 0.927 49 H 0.088 0.912 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 22.244 -0.449 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.138 4.138 3 H 0.126 0.874 4 C -0.190 4.190 5 C -0.215 4.215 6 H 0.138 0.862 7 C 0.337 3.663 8 O -0.417 6.417 9 N -0.356 5.356 10 C 0.098 3.902 11 C -0.013 4.013 12 O -0.372 6.372 13 C -0.149 4.149 14 C -0.074 4.074 15 N -0.238 5.238 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.067 4.067 29 C -0.162 4.162 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.234 0.766 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.221 0.779 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.036 0.964 42 H 0.125 0.875 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.046 0.954 48 H 0.092 0.908 49 H 0.107 0.893 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.411 21.572 -1.039 23.177 hybrid contribution 1.260 -0.129 0.374 1.320 sum -7.151 21.443 -0.665 22.613 Atomic orbital electron populations 1.21339 0.91442 1.01348 1.02464 1.22356 0.96601 0.93422 1.01402 0.87406 1.23091 1.03046 1.01906 0.90960 1.22322 1.02179 1.01261 0.95750 0.86230 1.19516 0.88029 0.80823 0.77914 1.90611 1.14428 1.74969 1.61692 1.45962 1.10623 1.29219 1.49805 1.20458 0.91369 0.88305 0.90067 1.22619 0.92408 0.94109 0.92190 1.86454 1.37230 1.62341 1.51155 1.21811 0.99126 0.96043 0.97896 1.22253 0.93937 0.96697 0.94553 1.61533 1.23609 1.18501 1.20176 1.21830 0.97487 0.94534 0.94624 1.19752 0.83848 0.84824 0.88584 1.90482 1.64199 1.77216 1.14212 1.41886 1.45574 1.22935 1.09796 1.19739 1.27502 1.01870 0.93535 0.87869 1.25259 0.97883 0.99078 0.95796 1.69623 1.41745 1.35574 1.07443 0.85813 0.78544 0.80246 0.79820 1.19225 1.20798 1.20765 1.22001 0.96040 0.93487 0.95123 1.21948 0.97847 0.98425 0.97991 0.91684 0.93540 0.91444 0.88213 0.87982 0.76593 0.91610 0.93062 0.77929 0.89458 0.90536 0.96369 0.87519 0.93677 0.89419 0.77529 0.91953 0.95358 0.90827 0.89330 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 8.43 37.16 0.31 -0.71 16 2 C -0.12 -1.00 6.41 -90.58 -0.58 -1.58 16 3 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.15 -1.23 9.88 -26.69 -0.26 -1.49 16 5 C -0.19 -1.75 6.19 -91.77 -0.57 -2.32 16 6 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 7 C 0.55 6.21 7.01 -10.98 -0.08 6.13 16 8 O -0.54 -7.05 9.40 5.56 0.05 -7.00 16 9 N -0.71 -7.78 3.95 -47.49 -0.19 -7.96 16 10 C 0.18 2.19 0.44 -131.69 -0.06 2.13 16 11 C 0.07 0.72 5.60 37.16 0.21 0.93 16 12 O -0.57 -6.01 13.02 -35.23 -0.46 -6.47 16 13 C -0.11 -1.48 4.81 -26.65 -0.13 -1.61 16 14 C 0.05 0.84 4.94 -3.83 -0.02 0.82 16 15 N -0.51 -8.43 4.40 -236.11 -1.04 -9.47 16 16 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 17 C 0.44 10.34 7.46 -10.99 -0.08 10.26 16 18 O -0.58 -15.20 13.90 5.54 0.08 -15.12 16 19 N -0.57 -14.21 5.29 -10.96 -0.06 -14.26 16 20 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 24 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 C 0.06 0.84 5.31 -3.83 -0.02 0.82 16 29 C -0.12 -1.55 4.75 -26.65 -0.13 -1.67 16 30 H 0.06 0.70 7.02 -51.93 -0.36 0.34 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.73 7.26 -51.93 -0.38 0.35 16 33 H 0.10 0.89 8.05 -51.93 -0.42 0.47 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.40 4.11 7.41 -40.82 -0.30 3.81 16 36 H 0.07 0.79 6.34 -51.93 -0.33 0.46 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.37 2.45 9.12 45.56 0.42 2.87 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.08 0.99 7.91 -51.93 -0.41 0.58 16 41 H 0.02 0.26 6.97 -51.93 -0.36 -0.10 16 42 H 0.11 2.07 5.78 -51.93 -0.30 1.77 16 43 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 44 H 0.09 1.44 7.99 -51.92 -0.41 1.02 16 45 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 46 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 47 H 0.03 0.38 7.69 -51.93 -0.40 -0.02 16 48 H 0.07 0.96 8.02 -51.93 -0.42 0.55 16 49 H 0.09 1.15 6.15 -51.93 -0.32 0.83 16 50 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 389.91 15.07 5.88 5.88 Total: -1.00 -31.98 389.91 -8.92 -40.90 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -7.21 Total: 16.70 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -1.67 Total: 4.62 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.56 Total: -55.48 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.33 Total: -28.59 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.98 -8.92 -40.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733916754.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.040 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds