Wall clock time and date at job start Tue Mar 31 2020 23:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 115.55096 * 2 1 4 4 C 1.53078 * 117.53150 * 145.71954 * 2 1 3 5 5 C 1.52998 * 59.98429 * 107.46848 * 4 2 1 6 6 H 1.08997 * 117.50364 * 107.50470 * 5 4 2 7 7 C 1.50705 * 117.49602 * 252.50044 * 5 4 2 8 8 O 1.21280 * 120.00202 * 68.74610 * 7 5 4 9 9 N 1.34774 * 119.99876 * 248.74989 * 7 5 4 10 10 C 1.46499 * 120.00222 * 185.11997 * 9 7 5 11 11 C 1.53004 * 109.52193 * 57.46122 * 10 9 7 12 12 O 1.42900 * 109.46847 * 54.58934 * 11 10 9 13 13 C 1.53123 * 109.52448 * 177.58883 * 10 9 7 14 14 C 1.53039 * 109.27480 * 62.37922 * 13 10 9 15 15 N 1.46849 * 109.57557 * 59.08194 * 14 13 10 16 16 C 1.46896 * 110.99765 * 174.19531 * 15 14 13 17 17 C 1.50699 * 109.47366 * 294.20641 * 16 15 14 18 18 O 1.21299 * 119.99846 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00668 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00049 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00193 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99639 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00140 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00063 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46739 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47213 * 119.99770 * 24 22 20 27 27 H 1.48500 * 109.47222 * 239.99871 * 24 22 20 28 28 C 1.46851 * 111.19723 * 298.28973 * 15 14 13 29 29 C 1.53036 * 109.52403 * 61.74330 * 28 15 14 30 30 H 1.09001 * 109.47108 * 205.67366 * 1 2 3 31 31 H 1.09005 * 109.47143 * 325.66719 * 1 2 3 32 32 H 1.08996 * 109.47515 * 85.66791 * 1 2 3 33 33 H 1.09001 * 117.51378 * 359.97438 * 4 2 1 34 34 H 1.09004 * 117.48972 * 214.95573 * 4 2 1 35 35 H 0.97006 * 120.00198 * 5.11280 * 9 7 5 36 36 H 1.09002 * 109.47079 * 294.58910 * 11 10 9 37 37 H 1.09004 * 109.47141 * 174.58749 * 11 10 9 38 38 H 0.96699 * 113.99741 * 180.02562 * 12 11 10 39 39 H 1.09003 * 109.49986 * 182.25340 * 13 10 9 40 40 H 1.08999 * 109.50025 * 302.37354 * 13 10 9 41 41 H 1.09001 * 109.41236 * 299.06867 * 14 13 10 42 42 H 1.08991 * 109.45354 * 179.12751 * 14 13 10 43 43 H 1.09000 * 109.47728 * 54.20818 * 16 15 14 44 44 H 1.09009 * 109.47200 * 174.20973 * 16 15 14 45 45 H 0.97004 * 119.99480 * 0.02562 * 19 17 16 46 46 H 0.97003 * 119.99807 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.46420 * 301.72645 * 28 15 14 48 48 H 1.09004 * 109.44821 * 181.75281 * 28 15 14 49 49 H 1.08998 * 109.50190 * 180.87543 * 29 28 15 50 50 H 1.09001 * 109.49916 * 60.76100 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2376 -1.1216 0.7646 5 6 2.2364 -1.1207 -0.7654 6 1 3.1711 -0.8746 -1.2693 7 6 1.3719 -2.1404 -1.4612 8 8 0.1637 -2.0524 -1.4025 9 7 1.9414 -3.1501 -2.1485 10 6 1.1058 -4.0759 -2.9173 11 6 0.2797 -3.2913 -3.9385 12 8 1.1504 -2.4952 -4.7448 13 6 1.9973 -5.0847 -3.6468 14 6 2.7744 -5.9089 -2.6178 15 7 1.8323 -6.6081 -1.7346 16 6 2.5406 -7.5160 -0.8226 17 6 3.1853 -8.6230 -1.6163 18 8 3.0668 -8.6525 -2.8231 19 7 3.8936 -9.5805 -0.9853 20 6 4.4805 -10.5872 -1.7075 21 1 4.3750 -10.6133 -2.7819 22 6 5.2103 -11.5745 -1.0568 23 7 5.3383 -11.5430 0.2507 24 14 6.0094 -12.9467 -2.0406 25 1 5.7174 -12.7556 -3.4841 26 1 7.4784 -12.9200 -1.8246 27 1 5.4673 -14.2555 -1.5954 28 6 0.9987 -5.6571 -0.9881 29 6 0.1674 -4.8265 -1.9683 30 1 -0.3633 -0.9262 0.4452 31 1 -0.3634 0.8487 0.5796 32 1 -0.3634 0.0776 -1.0247 33 1 1.6131 -1.8596 1.2681 34 1 3.1729 -0.8756 1.2673 35 1 2.9047 -3.2639 -2.1344 36 1 -0.4246 -2.6439 -3.4159 37 1 -0.2688 -3.9869 -4.5737 38 1 0.6938 -1.9693 -5.4156 39 1 1.3777 -5.7481 -4.2502 40 1 2.6967 -4.5526 -4.2915 41 1 3.4049 -5.2465 -2.0246 42 1 3.3984 -6.6385 -3.1336 43 1 3.3081 -6.9622 -0.2819 44 1 1.8324 -7.9431 -0.1124 45 1 3.9881 -9.5571 -0.0201 46 1 5.8481 -12.2320 0.7049 47 1 1.6375 -4.9959 -0.4026 48 1 0.3332 -6.2042 -0.3203 49 1 -0.4396 -4.1102 -1.4147 50 1 -0.4818 -5.4858 -2.5445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733916754.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:17 Heat of formation + Delta-G solvation = -111.861983 kcal Electronic energy + Delta-G solvation = -31027.963070 eV Core-core repulsion = 26862.035679 eV Total energy + Delta-G solvation = -4165.927391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.84591 -40.45318 -39.50669 -37.74842 -37.16340 -35.99884 -35.40920 -33.30554 -32.84288 -31.89176 -29.74713 -29.26054 -27.30759 -25.67272 -25.28573 -24.32538 -22.73047 -22.04949 -21.04387 -20.88282 -20.14250 -19.85219 -18.28467 -18.13212 -17.69645 -17.01074 -16.73443 -16.50381 -16.42855 -16.03500 -15.91530 -15.58067 -15.39032 -15.28460 -14.94646 -14.73670 -14.28495 -14.15417 -13.97184 -13.83413 -13.51207 -13.50251 -13.36497 -13.14090 -12.98615 -12.89028 -12.82926 -12.40043 -12.38658 -12.30821 -12.19579 -12.10833 -11.70381 -11.60255 -11.36416 -11.16813 -11.04540 -10.89740 -10.29748 -10.15392 -9.98401 -9.94857 -9.16316 -8.45458 -5.93619 1.36787 1.42060 1.56015 1.60766 2.07005 2.18354 2.28943 2.76053 2.89659 3.21277 3.21980 3.39622 3.59403 3.74893 3.75507 3.89335 3.96666 4.10939 4.20927 4.22133 4.27301 4.33139 4.46792 4.49243 4.50572 4.51124 4.54949 4.58794 4.69297 4.83082 4.84386 4.90462 4.94405 4.96364 5.01821 5.08508 5.08863 5.15063 5.21687 5.23847 5.42631 5.54956 5.65814 5.90620 6.10369 6.23795 6.62337 6.65354 6.84797 7.14831 7.35593 7.58486 8.14246 8.72283 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018817 B = 0.002483 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.650446 B =11274.661994 C =12069.680258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.120 4.120 3 H 0.129 0.871 4 C -0.144 4.144 5 C -0.201 4.201 6 H 0.136 0.864 7 C 0.545 3.455 8 O -0.560 6.560 9 N -0.703 5.703 10 C 0.187 3.813 11 C 0.072 3.928 12 O -0.578 6.578 13 C -0.099 4.099 14 C 0.058 3.942 15 N -0.529 5.529 16 C 0.058 3.942 17 C 0.444 3.556 18 O -0.611 6.611 19 N -0.576 5.576 20 C -0.328 4.328 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.067 3.933 29 C -0.117 4.117 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.404 0.596 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.392 0.608 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.034 0.966 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.035 0.965 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.305 23.553 0.267 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.139 4.139 3 H 0.147 0.853 4 C -0.182 4.182 5 C -0.222 4.222 6 H 0.154 0.846 7 C 0.334 3.666 8 O -0.439 6.439 9 N -0.354 5.354 10 C 0.101 3.899 11 C -0.006 4.006 12 O -0.385 6.385 13 C -0.137 4.137 14 C -0.070 4.070 15 N -0.254 5.254 16 C -0.073 4.073 17 C 0.231 3.769 18 O -0.497 6.497 19 N -0.213 5.213 20 C -0.458 4.458 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.061 4.061 29 C -0.156 4.156 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.141 0.859 35 H 0.239 0.761 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.241 0.759 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.125 0.875 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.054 0.946 48 H 0.099 0.901 49 H 0.106 0.894 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.011 22.907 -0.311 24.270 hybrid contribution 1.082 -0.475 0.125 1.188 sum -6.930 22.433 -0.186 23.479 Atomic orbital electron populations 1.21251 0.92524 1.00995 1.01399 1.22468 0.95833 0.94385 1.01195 0.85322 1.23142 1.03629 1.01221 0.90178 1.22372 1.02536 1.00986 0.96338 0.84588 1.19937 0.88069 0.80975 0.77662 1.90610 1.15472 1.75447 1.62412 1.45922 1.10719 1.29050 1.49662 1.20335 0.91088 0.88248 0.90214 1.22469 0.92007 0.94024 0.92125 1.86404 1.37751 1.62635 1.51730 1.21660 0.98956 0.95839 0.97250 1.22105 0.93975 0.96004 0.94898 1.61495 1.23856 1.19499 1.20557 1.21704 0.98222 0.93216 0.94170 1.20718 0.82536 0.85098 0.88559 1.90465 1.65018 1.78093 1.16118 1.41947 1.46303 1.23229 1.09840 1.19672 1.29480 1.03752 0.92865 0.90304 1.26018 0.97801 1.00725 0.96832 1.69681 1.41948 1.36342 1.08353 0.84893 0.78013 0.77540 0.78030 1.19793 1.19622 1.19738 1.22017 0.95756 0.93103 0.95207 1.21874 0.97710 0.98153 0.97840 0.93517 0.92077 0.93138 0.89347 0.85893 0.76081 0.92420 0.92384 0.75862 0.90826 0.90032 0.94754 0.91548 0.91707 0.87497 0.77117 0.91383 0.94640 0.90058 0.89438 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 8.43 71.98 0.61 -1.25 16 2 C -0.12 -1.75 6.41 -10.77 -0.07 -1.82 16 3 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.14 -1.98 9.88 30.62 0.30 -1.68 16 5 C -0.20 -3.19 6.19 -11.54 -0.07 -3.26 16 6 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 7 C 0.55 11.54 7.01 87.66 0.61 12.15 16 8 O -0.56 -14.22 9.40 -3.03 -0.03 -14.25 16 9 N -0.70 -14.46 3.95 -422.55 -1.67 -16.13 16 10 C 0.19 4.28 0.44 3.69 0.00 4.28 16 11 C 0.07 1.53 5.60 71.98 0.40 1.93 16 12 O -0.58 -11.41 13.02 -148.98 -1.94 -13.35 16 13 C -0.10 -2.61 4.81 30.65 0.15 -2.46 16 14 C 0.06 1.81 4.94 86.33 0.43 2.24 16 15 N -0.53 -16.99 4.40 -900.92 -3.96 -20.95 16 16 C 0.06 2.02 5.45 85.56 0.47 2.48 16 17 C 0.44 20.95 7.46 87.66 0.65 21.60 16 18 O -0.61 -33.21 13.90 -3.09 -0.04 -33.25 16 19 N -0.58 -29.44 5.29 -306.98 -1.62 -31.06 16 20 C -0.33 -18.56 9.68 84.04 0.81 -17.75 16 21 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 23 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 24 Si 0.99 42.98 29.55 68.60 2.03 45.00 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 28 C 0.07 1.71 5.31 86.32 0.46 2.16 16 29 C -0.12 -2.82 4.75 30.65 0.15 -2.67 16 30 H 0.05 0.99 7.02 -2.39 -0.02 0.97 16 31 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.05 1.06 7.26 -2.39 -0.02 1.04 16 33 H 0.09 1.43 8.05 -2.39 -0.02 1.42 16 34 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.40 7.59 7.41 -92.70 -0.69 6.90 16 36 H 0.06 1.34 6.34 -2.39 -0.02 1.32 16 37 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.39 4.52 9.12 -74.06 -0.68 3.84 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.08 2.06 7.91 -2.39 -0.02 2.04 16 41 H 0.03 0.95 6.97 -2.39 -0.02 0.93 16 42 H 0.07 2.65 5.78 -2.39 -0.01 2.64 16 43 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 44 H 0.11 3.33 7.99 -2.38 -0.02 3.31 16 45 H 0.40 19.27 7.90 -92.71 -0.73 18.53 16 46 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 47 H 0.04 0.87 7.69 -2.39 -0.02 0.85 16 48 H 0.08 1.97 8.02 -2.38 -0.02 1.95 16 49 H 0.09 2.19 6.15 -2.39 -0.01 2.17 16 50 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -69.56 389.91 -2.70 -72.26 By element: Atomic # 1 Polarization: 46.68 SS G_CDS: -1.11 Total: 45.57 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 5.37 Total: 15.66 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -6.97 Total: -117.64 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -2.01 Total: -60.85 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -69.56 -2.70 -72.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733916754.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.602 kcal (2) G-P(sol) polarization free energy of solvation -69.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds